Genomics and Bioinformatics of Leukemia

09/2004-06/2009, Ph.D. CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China. Major: Genomics. Advisor: Prof. Jun Yu (Ph.D.)

09/2000-06/2004, B.Sc.  College of Life Sciences, Anhui University, Hefei, Anhui, China. Major: Biological Science

06/2020-present, Master's supervisor, CAS Key Laboratory of Genomic and Precision Medicine, Beijing Institute of Genomics, Chinese Academy of Sciences (China National Center for Bioinformation)

07/2019-present, Research associate professor, CAS Key Laboratory of Genomic and Precision Medicine, Beijing Institute of Genomics, Chinese Academy of Sciences (China National Center for Bioinformation)

01/2015-06/2019, Research associate professor, CAS Key Laboratory of Genomic and Precision Medicine, Beijing Institute of Genomics, Chinese Academy of Sciences

07/2009-12/2014, Research assistant professor, Laboratory of Genome Variations and Precision Bio-Medicine, Beijing Institute of Genomics, Chinese Academy of Sciences

   

# co-first author, * co-corresponding author

1.      Yongping Zhang#, Shuting Jiang#, Fuhong He#, Yuanyuan Tian#, Haiyang Hu, Li Gao, Lin Zhang, Aili Chen, Yixin Hu, Liyan Fan, Chun Yang, Bi Zhou, Dan Liu, Zihan Zhou, Yanxun Su, Lei Qin, Yi Wang, Hailong He, Jun Lu, Peifang Xiao, Shaoyan Hu*, Qian-Fei Wang*. Single-cell transcriptomics reveals multiple chemoresistant properties in leukemic stem and progenitor cells in pediatric AML. Genome Biology. 2023 Aug 31;24(1):199. DOI: 10.1186/s13059-023-03031-7.

2.      Peng Zhang#, Fuhong He#, Jie Bai#, Shohei Yamamoto, Shi Chen, Lin Zhang, Mengyao Sheng, Lei Zhang, Ying Guo, Na Man, Hui Yang, Suyun Wang, Tao Cheng, Stephen D. Nimer, Yuan Zhou, Mingjiang Xu*, Qian-Fei Wang*, Feng-Chun Yang*. Chromatin regulator Asxl1 loss and Nf1 haploinsufficiency cooperate to accelerate myeloid malignancy. Journal of Clinical Investigation. 2018 Dec 3;128(12):5383-5398. DOI: 10.1172/JCI121366.

3.      Jianping Li#, Fuhong He#, Peng Zhang#, Shi Chen, Hui Shi, Yanling Sun, Ying -Guo, Hui Yang, Na Man, Sarah Greenblatt, Zhaomin Li, Zhengyu Guo, Yuan Zhou, Lan Wang, Lluis Morey, Sion Williams, Xi Chen, Qun-Tian Wang, Stephen -D. Nimer, Peng Yu, Qian-Fei Wang*, Mingjiang Xu*, Feng-Chun Yang*. Loss of Asxl2 leads to myeloid malignancies in mice. Nature Communications. 2017 Jun 8;8:15456. DOI: 10.1038/ncomms15456.

4.      Xiaofan Zhu#, Fuhong He#, Huimin Zeng#, Shaoping Ling#, Aili Chen#, Yaqin Wang, Xiaomei Yan, Wei Wei, Yakun Pang, Hui Cheng, Chunlan Hua, Yue Zhang, Xuejing Yang, Xin Lu, Lihua Cao, Lingtong Hao, Lili Dong, Wei Zou, Jun Wu, Xia Li, Si Zheng, Jin Yan, Jing Zhou, Lixia Zhang, Shuangli Mi, Xiaojuan Wang, Li Zhang, Yao Zou, Yumei Chen, Zhe Geng, Jianmin Wang, Jianfeng Zhou, Xin Liu, Jianxiang Wang, Weiping Yuan, Gang Huang*, Tao Cheng*, Qian-fei Wang*. Identification of functional cooperative mutations of SETD2 in human acute leukemia. Nature Genetics, 2014.02.09, 46(3):287-293. DOI: 10.1038/ng.2894.

5.      Jiang Zhu#, Fuhong He#, Songnian Hu, Jun Yu*. On the nature of human housekeeping genes. Trends in Genetics, 2008.09.09, 24(10):481-484. DOI: 10.1016/j.tig.2008.08.004.

6.      Jiang Zhu#, Fuhong He#, Shuhui Song, Jing Wang*, Jun Yu*. How many human genes can be defined as housekeeping with current expression data?. BMC Genomics, 2008.4.16, 9(1):172-182. DOI: 10.1186/1471-2164-9-172.

7.      Dong L#, Zheng Y, Liu D, He F, Lee K, Li L*, Wang Q*. Analyses of Long Noncoding RNA and mRNA Profiles in Subjects with the Phlegm-Dampness Constitution. Biomed Res Int. 2021;2021:4896282. DOI: 10.1155/2021/4896282. eCollection 2021.

8.      Xuejing Yang#, Yedan Lu, Fuhong He, Fenxia Hou, Caihong Xing*, Peiyu Xu*, Qian-fei Wang*. Benzene metabolite hydroquinone promotes DNA homologous recombination repair via the NF-κB pathway. Carcinogenesis. 2019 Feb 16. pii: bgy157. DOI: 10.1093/carcin/bgy157.

9.      Yixin Hu#, Aili Chen#, Xinchang Zheng#, Jun Lu#, Hailong He, Jin Yang, Ya Zhang, Pinpin Sui, Jingyi Yang, Fuhong He, Yi Wang, Peifang Xiao, Xin Liu, Yinmei Zhou, Deqing Pei, Cheng Cheng, Raul C. Ribeiro*, Shaoyan Hu*, Qian-fei Wang*. Ecological Principle Meets Cancer Treatment: Treating Children with Acute Myeloid Leukemia with Low-Dose Chemotherapy. National Science Review, nwz006. 22 January 2019. DOI: 10.1093/nsr/nwz006.

10.    Yingchi Zhang#, Yufeng Gao#, Hui Zhang#, Jingliao Zhang, Fuhong He, Aleš Hnízda, Maoxiang Qian, Xiaoming Liu, Yoshihiro Gocho, Ching-Hon Pui, Tao Cheng, Qianfei Wang, Jun J Yang*, Xiaofan Zhu*, Xin Liu*. PDGFRB mutation and tyrosine kinase inhibitor resistance in Ph-like acute lymphoblastic leukemia. Blood. 2018 Feb 6. pii: blood-2017-11-817510. DOI: 10.1182/blood-2017-11-817510.

11.    Jiachen Bu#, Aili Chen, Xiaomei Yan, Fuhong He, Yunzhu Dong, Yile Zhou, Jianlin He, Di Zhan, Peipei Lin, Yoshihiro Hayashi, Yanling Sun, Yue Zhang, Zhijian Xiao, H. Leighton Grimes, Qian-Fei Wang*, Gang Huang*. SETD2-mediated crosstalk between H3K36me3 and H3K79me2 in MLL-rearranged leukemia. Leukemia. 2017 Nov 29. DOI: 10.1038/leu.2017.339.

12.    Peng Zhang#, Caihong Xing#, Steven D. Rhodes, Yongzheng He, Kai Deng, Zhaomin Li, Fuhong He, Caiying Zhu, Nguyen Lihn, Yuan Zhou, Shi Chen, Khalid S. Mohammad, Theresa A. Guise, Omar Abdel-Wahab, Mingjiang Xu, Qian-Fei Wang*, Feng-Chun Yang*. Loss of Asxl1 Alters Self-Renewal and Cell Fate of Bone Marrow Stromal Cells, Leading to Bohring-Opitz-like Syndrome in Mice. Stem Cell Reports, 2016.06.14, 6(6):914-925. DOI: 10.1016/j.stemcr.2016.04.013.

13.    Yuejing Yang#, Fuhong He, Yizi Huang, Jin Yan, Qian-fei Wang*. LSD1 inhibition induces differentiation of MLL-ENL leukemia cells. J Development Med, 2015.4.30, (02):91-95.

14.    Xinghui Zhao#, Aili Chen#, Xiaomei Yan, Yue Zhang, Fuhong He, Yoshihiro Hayashi, Yunzhu Dong, Yalan Rao, Bo Li, Rajeana M. Conway, Alba Maiques-Diaz, Shannon E. Elf, Nuomin Huang, Johannes Zuber, Zhijian Xiao, William Tse, Daniel G. Tenen, Qian-fei Wang, Wei Chen, James C. Mulloy, Stephen D. Nimer, Gang Huang*. Downregulation of RUNX1/CBFβ by MLL fusion proteins enhances hematopoietic stem cell self-renewal. Blood, 2014.3.13, 123(11):1729-1738. DOI: 10.1182/blood-2013-03-489575.

15.    Jing Zhou#, Jun Wu#, Bo Li#, Dan Liu, Jian Yu, Xiaomei Yan, Si Zheng, Jiguang Wang, Lixia Zhang, Lin Zhang, Fuhong He, Qiang Li, Aili Chen, Yue Zhang, Xinghui Zhao, Yinghui Guan, Xiaohong Zhao, Jin Yan, Jun Ni, Marcelo Nobrega, Bob Löwenberg, Ruud Delwel, Peter J. Valk, Ashish Kumar, Lu Xie, Daniel G. Tenen, Gang Huang*, Qian-fei Wang*. PU.1 is essential for MLL leukemia partially via crosstalk with the MEIS/HOX pathway. Leukemia, 2014.01.21, 28(7):1436-1448. DOI: 10.1038/leu.2013.384.

16.    Chunlan Hua#, Huidong Guo, Jiachen Bu, Mi Zhou, Hui Cheng, Fuhong He, Jinhong Wang, Xiaomin Wang, Yinchi Zhang, Qian-fei Wang, Jianfeng Zhou, Tao Cheng, Mingjiang Xu, Weiping Yuan*. Rictor/mammalian target of rapamycin 2 regulates the development of notch1 induced murine T-cell acute lymphoblastic leukemia via forkhead box O3. Experimental Hematology, 2014.12.01, 42(12):1031-1040. DOI: 10.1016/j.exphem.2014.08.006.

17.    Yanfeng Liu#, Hui Cheng#, Shuai Gao, Xin Lu, Fuhong He, Linping Hu, Di Hou, Zhengyong Zou, Yanxin Li, Hongyan Zhang, Jing Xu, Lan Kang, Qian-fei Wang, Weiping Yuan, Shaorong Gao*, Tao Cheng*. Reprogramming of MLL-AF9 leukemia cells into pluripotent stem cells. Leukemia, 2013.11.15, 28(5):1071-1080. DOI: 10.1038/leu.2013.304.

18.    Qian-Fei Wang#*, Yajun Li, Jingfang Dong, Bo Li, Joseph J. Kaberlein, Lin Zhang, Fábio Eiji Arimura, Roger T. Luo, Jun Ni, Fuhong He, Jun Wu, Ryan Mattison, Jing Zhou, Chongzhi Wang, Shyam Prabhakar, Marcelo Nobrega, Michael J. Thirman*. Regulation of MEIS1 by distal enhancer elements in acute leukemia. Leukemia, 2013.10.15, 28(1):138-146. DOI: 10.1038/leu.2013.260.

19.    Gang Wu#, Jiang Zhu, Fuhong He, Weiwei Wang, Songnian Hu, Jun Yu*. Gene and Genome Parameters of Mammalian Liver Circadian Genes (LCGs). PLoS One, 2012.10.10, 7(10):e46961-e46973. DOI: 10.1371/journal.pone.0046961.

20.    Qian-fei Wang#, George Wu, Shuangli Mi, Fuhong He, Jun Wu, Jingfang Dong, Roger T. Luo, Ryan Mattison, Joseph J. Kaberlein, Shyam Prabhakar, Hongkai Ji, Michael J. Thirman*. MLL fusion proteins preferentially regulate a subset of wild-type MLL target genes in the leukemic genome. Blood, 2011.04.25, 117(25):6895-6905. DOI: 10.1182/blood-2010-12-324699.

21.    Jiang Zhu#, Fuhong He, Dapeng Wang, Kan Liu, Dawei Huang, Jingfa Xiao, Jiayan Wu, Songnian Hu, Jun Yu*. A Novel Role for Minimal Introns: Routing mRNAs to the Cytosol. PLoS One, 2010.4.12, 5(4):e10144-e10151. DOI: 10.1371/journal.pone.0010144.

22.    Dapeng Wang#, Song Zhang, Fuhong He, Jiang Zhu, Songnian Hu, Jun Yu*. How Do Variable Substitution Rates Influence Ka and Ks Calculations?. Genomics, Proteomics & Bioinformatics, 2009.9.1, 7(3):116-127. DOI: 10.1016/S1672-0229(08)60040-6.

23.    Jiang Zhu#, Fuhong He, Jing Wang*, Jun Yu*. Modeling Transcriptome Based on Transcript-Sampling Data. PLoS One, 2008.2.20, 3(2):e1659-e1667. DOI: 10.1371/journal.pone.0001659.