基本信息
金钟  男  博导  中国科学院计算机网络信息中心
电子邮件: zjin@sccas.cn
通信地址: 北京市海淀区中关村南四街四号
邮政编码: 100190

研究领域

高性能计算

教育背景

2001-08--2006-08   美国Emory University   理学博士
1992-09--1997-08   北京大学   理学学士

工作经历

   

专利与奖励

   
奖励信息
(1) 首届“中国科学院超级计算应用奖”最佳应用奖, 一等奖, 院级, 2013
专利成果
( 1 ) 基于网格的计算化学应用整合系统, 发明, 2011, 第 1 作者, 专利号: 201110023949.X
( 2 ) 基于网格的计算化学过程可视化系统及控制方法, 发明, 2011, 第 1 作者, 专利号: 201110023957.4

出版信息

   
发表论文
[1] 徐顺, 王武, 张鉴, 姜金荣, 金钟, 迟学斌. 面向异构计算的高性能计算算法与软件. 软件学报. 2021, 32(8): 2365-2376, [2] 马英晋, 张坦, 何连花, 金钟. 第一性原理软件北京原子技术模拟工具包的重构进展. 物理学报[J]. 2020, 69(4): 94-101, http://lib.cqvip.com/Qikan/Article/Detail?id=7100874207.
[3] 金钟. Multi-scale simulations on biocompatibility of boron nitride nanomaterials with different curvatures: A comparative study. Applied Surface Science. 2020, [4] Liu, Tingfeng, Jin, Zhong, Liu, DongXin, Du, Chunmiao, Wang, Lu, Lin, Haiping, Li, Youyong. A density functional theory study of high-performance pre-lithiated MS2 (M=Mo, W, V) Monolayers as the Anode Material of Lithium Ion Batteries. SCIENTIFIC REPORTS[J]. 2020, 10(1): http://dx.doi.org/10.1038/s41598-020-63743-9.
[5] 金钟, 陆忠华, 李会元, 迟学斌, 孙家昶. 高性能计算之源起——科学计算的应用现状及发展思考. 中国科学院院刊[J]. 2019, 625-639, http://lib.cqvip.com/Qikan/Article/Detail?id=75898988504849574854484854.
[6] Ma, Jie, Chen, Tao, Wu, Songfeng, Yang, Chunyuan, Bai, Mingze, Shu, Kunxian, Li, Kenli, Zhang, Guoqing, Jin, Zhong, He, Fuchu, Hermjakob, Henning, Zhu, Yunping. iProX: an integrated proteome resource. NUCLEIC ACIDS RESEARCH[J]. 2019, 47(D1): D1211-D1217, http://www.corc.org.cn/handle/1471x/2374258.
[7] Xiaofei Shen, Lin Zhao, Peihao Chen, Yanqiu Gong, Dingdong Liu, Xia Zhang, Lunzhi Dai, Qingxiang Sun, Jizhong Lou, Zhong Jin, Baohua Zhang, Dawen Niu, Ceshi Chen, Xiangbing Qi, Da Jia. A thiazole-derived oridonin analogue exhibits antitumor activity by directly and allosterically inhibiting STAT3. The Journal of Biological Chemistry. 2019, 294(46): 17471-17486, http://dx.doi.org/10.1074/jbc.RA119.009801.
[8] He, Yuqing, Jiang, Yi, Zhang, Tiantian, Huang, He, Fang, Chen, Jin, Zhong. SymTopo: An automatic tool for calculating topological properties of nonmagnetic crystalline materials. CHINESE PHYSICS B[J]. 2019, 28(8): http://lib.cqvip.com/Qikan/Article/Detail?id=7002765360.
[9] Chen, Xinyu, Zhang, Yadong, Zhang, Zhewen, Zhao, Yongbing, Sun, Chen, Yang, Ming, Wang, Jinyue, Liu, Qian, Zhang, Baohua, Chen, Meili, Yu, Jun, Wu, Jiayan, Jin, Zhong, Xiao, Jingfa. PGAweb: A Web Server for Bacterial Pan-Genome Analysis. FRONTIERS IN MICROBIOLOGY[J]. 2018, 9: http://www.corc.org.cn/handle/1471x/2374278.
[10] 田英齐, 马英晋, 索兵兵, 金钟. 异构计算量子化学软件的研发恰逢其时. 中国科学基金[J]. 2018, 32(1): 109-117, http://lib.cqvip.com/Qikan/Article/Detail?id=674403043.
[11] 陈新宇. 基于高性能计算环境的科学计算应用平台设计与实现. 2017, [12] 徐顺, 刘倩, 张宝花, 何连花, 金钟. 基于Intel MIC平台大规模耗散粒子动力学模拟的设计与优化. 计算机工程与科学[J]. 2017, 39(8): 1391-1396, http://lib.cqvip.com/Qikan/Article/Detail?id=673055998.
[13] 金钟. 小分子配体模拟水分子: 计算模拟相同配体与不同蛋白之间的作用模式. 科研信息化应用. 2017, [14] 金钟. 基于云服务的计算化学社区. 科研信息化应用. 2016, [15] 金钟. 一种生物大分子自动分片程序设计技术. 科研信息化应用. 2016, [16] Chen, Jingyi, Jin, Zhong, Yang, Keda. Three-dimensional numerical simulation of viscoelastic phase separation under shear: the roles of bulk and shear relaxation moduli. CHINESE JOURNAL OF POLYMER SCIENCE[J]. 2015, 33(11): 1562-1573, http://www.corc.org.cn/handle/1471x/2374165.
[17] Sun, Yeping, Liu, Qian. Differential structural dynamics and antigenicity of two similar influenza H5N1 virus HA-specific HLA-A*0201-restricted CLT epitopes. RSC ADVANCES[J]. 2015, 5(3): 2318-2327, https://www.webofscience.com/wos/woscc/full-record/WOS:000346189100093.
[18] Zhang, Baohua, Wei, Fan, Wu, Qian, Piao, Lingyu, Liu, Min, Jin, Zhong. Formation and Evolution of the High-Surface-Energy Facets of Anatase TiO2. JOURNAL OF PHYSICAL CHEMISTRY C[J]. 2015, 119(11): 6094-6100, http://dx.doi.org/10.1021/acs.jpcc.5b00087.
[19] Ling, Yunchao, Jin, Zhong, Su, Mingming, Zhong, Jun, Zhao, Yongbing, Yu, Jun, Wu, Jiayan, Xiao, Jingfa. VCGDB: a dynamic genome database of the Chinese population. BMC GENOMICS[J]. 2014, 15(1): http://www.corc.org.cn/handle/1471x/2374155.
[20] Zaichao Zhang, Zhong Jin, Yongbing Zhao, Zhewen Zhang, Rujiao Li, Jingfa Xiao, Jiayan Wu. Systematic study on G-protein couple receptor prototypes: did they really evolve from prokaryotic genes?. IET SYSTEMS BIOLOGY[J]. 2014, 8(4): 154-161, http://dx.doi.org/10.1049/iet-syb.2013.0037.
[21] Jin, Zhong, Han, Keli. International Conference on Theoretical and High-Performance Computational Chemistry. JOURNAL OF PHYSICAL CHEMISTRY Anull. 2014, 118(39): 8889-8892, http://cas-ir.dicp.ac.cn/handle/321008/145549.
[22] Fu, Ting, Jin, Zhong, Xiu, Zhilong, Li, Guohui. Binding Free Energy Estimation for Protein-Ligand Complex Based on MM-PBSA with Various Partial Charge Models. CURRENT PHARMACEUTICAL DESIGN[J]. 2013, 19(12): 2293-2307, http://159.226.238.44/handle/321008/137724.
[23] Bu, Jingde, Chi, Xuebin, Jin, Zhong. HSA: A Heuristic Splice Alignment Tool. BMC SYSTEMS BIOLOGY[J]. 2013, 7(Suppl 2): S10-S10, http://www.corc.org.cn/handle/1471x/2374156.
[24] Wu, Xue, Jin, Zhong, Xiu, Zhilong, Li, Guohui. The Challenge to the Rule of Homology Modeling: Folding Mechanism Study of Protein G(A) and G(B) with High Sequence Identity but Different Native Structures. CURRENT PHARMACEUTICAL DESIGN[J]. 2013, 19(12): 2282-2292, http://159.226.238.44/handle/321008/137799.
[25] 吴佳妍. BAsplice: Bi-direction Alignment for detecting splice junctions. 2012 IEEE 6th International Conference on Systems Biology. 2012, [26] Dongarra, Jack, Beckman, Pete, Moore, Terry, Aerts, Patrick, Aloisio, Giovanni, Andre, JeanClaude, Barkai, David, Berthou, JeanYves, Boku, Taisuke, Braunschweig, Bertrand, Cappello, Franck, Chapman, Barbara, Chi, Xuebin, Choudhary, Alok, Dosanjh, Sudip, Dunning, Thom, Fiore, Sandro, Geist, Al, Gropp, Bill, Harrison, Robert, Hereld, Mark, Heroux, Michael, Hoisie, Adolfy, Hotta, Koh, Jin, Zhong, Ishikawa, Yutaka, Johnson, Fred, Kale, Sanjay, Kenway, Richard, Keyes, David, Kramer, Bill, Labarta, Jesus, Lichnewsky, Alain, Lippert, Thomas, Lucas, Bob, Maccabe, Barney, Matsuoka, Satoshi, Messina, Paul, Michielse, Peter, Mohr, Bernd, Mueller, Matthias S, Nagel, Wolfgang E, Nakashima, Hiroshi, Papka, Michael E, Reed, Dan, Sato, Mitsuhisa, Seidel, Ed, Shalf, John, Skinner, David, Snir, Marc, Sterling, Thomas, Stevens, Rick, Streitz, Fred, Sugar, Bob, Sumimoto, Shinji, Tang, William, Taylor, John, Thakur, Rajeev, Trefethen, Anne, Valero, Mateo, van der Steen, Aad, Vetter, Jeffrey, Williams, Peg, Wisniewski, Robert, Yelick, Kathy. The International Exascale Software Project roadmap. INTERNATIONAL JOURNAL OF HIGH PERFORMANCE COMPUTING APPLICATIONS[J]. 2011, 25(1): 3-60, http://dx.doi.org/10.1177/1094342010391989.
[27] 金钟. 基于网格的计算化学应用整合系统. 华中科技大学学报. 2011, [28] 金钟. 基于深腾7000的NAMD千核性能分析. 科研信息化技术与应用. 2011, [29] 金钟. 基于CNGrid的GridMol中作业管理器的设计与实现. 计算机应用研究. 2011, [30] Yan Liu, Jianpei Geng, Zhong Jin, Fujian Zong. The rate constants of the H + FO reaction and its isotope variant on two electronic states. Chemical Physics. 2011, 385(1): 11-18, http://dx.doi.org/10.1016/j.chemphys.2011.01.010.
[31] 金钟. An Integrated and Grid Based Solution of Chemical Application. International Conference of Information Computation and Applications 2010. 2010, [32] 金钟. GridMol系统中蛋白质显示与建模的性能优化. 计算机工程. 2009, [33] Sun, Yanhua, Shen, Bin, Lu, Zhonghua, Jin, Zhong, Chi, Xuebin. GridMol: a grid application for molecular modeling and visualization. JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN[J]. 2008, 22(2): 119-129, http://www.corc.org.cn/handle/1471x/2374107.
[34] Christoffel, Kurt M, Jin, Zhong, Braams, Bastiaan J, Bowman, Joel M. Quasiclassical trajectory study of the CH3++HD -> CH2D++H-2 Reaction. JOURNAL OF PHYSICAL CHEMISTRY A[J]. 2007, 111(29): 6658-6664, https://www.webofscience.com/wos/woscc/full-record/WOS:000248121400011.
[35] 孙衍华, 刘继凤, 汪文英, 金钟, 陆忠华, 迟学斌. GridMol:基于网格的分子可视化建模应用系统. 微电子学与计算机[J]. 2007, 24(9): 52-55, http://lib.cqvip.com/Qikan/Article/Detail?id=25375339.
[36] Jin, Z, Braams, BJ, Bowman, JM. An ab initio based global potential energy surface describing CH5+ -> CH3++H-2. JOURNAL OF PHYSICAL CHEMISTRY A[J]. 2006, 110(4): 1569-1574, https://www.webofscience.com/wos/woscc/full-record/WOS:000235198100039.
发表著作
(1) 《高性能计算应用概览》第3章 高性能计算应用之生物学研究, 清华大学出版社, 2018-06, 第 1 作者

指导学生

已指导学生

卜景德  02  19581  

万波  02  19261  

王今晨  02  19261  

邱英秋  02  19261  

现指导学生

户忠哲  02  63236  

陈新宇  02  63236  

田英齐  02  19261  

张帅  02  63236  

贺雨晴   02  19261