葛源 男 生态环境研究中心
电子邮件:yuange@rcees.ac.cn
通信地址:北京市海淀区双清路18号
邮政编码:100085

研究领域

典型扰动条件下土壤微生物群落的结构与功能演替及适应机制;

微生物参与的土壤污染物转化消减过程与机制。

招生信息

博士生、硕士生

招生专业
071300-生态学
招生方向
微生物生态学,土壤环境科学

工作经历

2009年博士毕业于中国科学院生态环境研究中心,同年赴美国加州大学圣芭芭拉分校从事研究工作,分别担任Assistant Specialist和Associate Specialist,于2015年受中国科学院“引进海外杰出人才”项目资助,任生态环境研究中心研究员、中国科学院大学岗位教授。研究成果发表于PNAS、ISME Journal、Environmental Science & Technology、mBio、Journal of Ecology、Molecular Ecology、Environmental Microbiology等国际主流学术期刊。担任我国土壤学会土壤生物与生物化学专业委员会委员、生态学会微生物生态专业委员会委员、土壤学会土壤分析技术工作委员会委员。担任SCI期刊Journal of Soils and Sediments编委、栏目编辑。

教授课程

土壤生物学前沿(21-22春季)
土壤生物学前沿(20-21春季)
土壤生物学前沿(19-20春季)
土壤生物学前沿(18-19春季)
土壤生物学前沿专题讨论(17-18春季)
土壤生物学(17-18秋季)
土壤生物学前沿专题讨论(16-17春季)
土壤生物学(16-17秋季)
土壤生物学前沿专题讨论(15-16春季)
土壤生物学(15-16秋季)

出版信息

Selected Publications (#Equal contribution; *Corresponding author)
2022
1)    Yan Li#; Jiang Wang#; Congcong Shen; Jichen Wang; Brajesh K. Singh; Yuan Ge*. Plant diversity improves resistance of plant biomass and soil microbial communities to drought. Journal of Ecology, 2022, DOI: 10.1111/1365-2745.13900.
2)    Zhongwang Jing#; Jiang Wang#; Yi Bai; Yuan Ge*. Faunal communities mediate the effects of plant richness, drought, and invasion on ecosystem multifunctional stability. Communications Biology, 2022, 5:527.
3)    Congcong Shen; Jiang Wang; Zhongwang Jing; Neng-Hu Qiao; Chao Xiong; Yuan Ge*. Plant diversity enhances soil fungal network stability indirectly through the increase of soil carbon and fungal keystone taxa richness. Science of the Total Environment, 2022, 818: 151737.
4)    Bojian Li#; Congcong Shen#; Hua-Yong Wu; Li-Mei Zhang; Jichen Wang; Siyi Liu; Zhongwang Jing; Yuan Ge*. Environmental selection dominates over dispersal limitation in shaping bacterial biogeographical patterns across different soil horizons of the Qinghai-Tibet Plateau. Science of the Total Environment, 2022, 838: 156177.
5)    Junnan Fang; Xue-Ting Bai; Lin Qi; Raja Vukanti; Yuan Ge*. Rare-earth metal oxide nanoparticles decouple the linkage between soil bacterial community structure and function by selectively influencing potential keystone taxa. Environmental Pollution, 2022, 298: 118863.
6)    Jichen Wang; Jiang Wang; Ji-Zheng He; Zhongwang Jing; Yongli Xu; Yuan Ge*. Arbuscular mycorrhiza fungi increase soil denitrifier abundance relating to vegetation community. Applied Soil Ecology, 2022, 171(16): 104325.
7)    Jiang Wang#; Yuan Ge#; Johannes H. C. Cornelissen; Xiao‑Yan Wang; Song Gao; Yi Bai; Tong Chen; Zhong‑Wang Jing; Chong‑Bang Zhang; Wen‑Li Liu; Jun‑Min Li; Fei‑Hai Yu*. Litter nitrogen concentration changes mediate effects of drought and plant species richness on litter decomposition. Oecologia, 2022, 198:507-518.

2021
1)    Yuan Ge#*; Zhongwang Jing#; Qingyun Diao; Ji-Zheng He; Yong-Jun Liu*. Host species and geography differentiate honeybee gut bacterial communities by changing the relative contribution of community assembly processes. mBio, 2021, 12(3): e00751-21.
2)    Yan Li#; Yuan Ge#*; Jichen Wang; Congcong Shen; Jianlei Wang; Yong-Jun Liu. Functional redundancy and specific taxa modulate the contribution of prokaryotic diversity and composition to multifunctionality. Molecular Ecology, 2021, 30(12): 2915-2930.
3)    Jichen Wang#; Jiang Wang#; Ji-Zheng He; Yong-Guan Zhu; Neng-Hu Qiao; Yuan Ge*. Arbuscular mycorrhizal fungi and plant diversity drive restoration of nitrogen-cycling microbial communities. Molecular Ecology, 2021, 30(16): 4133-4146.
4)    Congcong Shen#; Jiang Wang#; Ji-Zheng He; Fei-Hai Yu; Yuan Ge*. Plant diversity enhances soil fungal diversity and microbial resistance to plant invasion. Applied & Environmental Microbiology, 2021, 87(11): e00251-21.
5)    Congcong Shen; Ji-Zheng He; Yuan Ge*. Seasonal dynamics of soil microbial diversity and functions along elevations across the treeline. Science of the Total Environment, 2021, 794: 148644.
6)    Yan Yue; Yong-Jun Liu; Jichen Wang; Raja Vukanti; Yuan Ge*. Enrichment of potential degrading bacteria accelerates removal of tetracyclines and their epimers from cow manure biochar amended soil. Chemosphere, 2021, 278: 130358.
7)    Yao-Qin Sun; Yuan Ge*. Temporal changes in the function of bacterial assemblages associated with decomposing earthworms. Frontiers in Microbiology, 2021, 12: 682224.
8)    Yong-Jun Liu#*; Zhongwang Jing#; Xue-Ting Bai#; Qing-Yun Diao; Jichen Wang; Yan-Yan Wu; Qing Zhao; Tian Xia; Baoshan Xing; Patricia A. Holden; Yuan Ge*. Nano-La2O3 induces honeybee (Apis mellifera) death and enriches for pathogens in honeybee gut bacterial communities. Frontiers in Microbiology, 2021, 12: 780943.
9)    Jianlei Wang#; Qingkang Li#; Congcong Shen#; Fengting Yang; Jichen Wang; Yuan Ge*. Significant dose effects of fertilizers on soil diazotrophic diversity, community composition, and assembly processes in a long-term paddy field fertilization experiment. Land Degradation & Development, 2021, 32(1): 420-429.
10)    Xue-Ting Bai; Jichen Wang; Hailiang Dong; Jia-Min Chen; Yuan Ge*. Relative importance of soil properties and heavy metals/metalloids to modulate microbial community and activity at a smelting site. Journal of Soils and Sediments, 2021, 21(1): 1-12.
11)    Xiao-Yan Wang#; Yuan Ge#; Song Gao; Tong Chen; Jiang Wang*; Fei-Hai Yu*. Evenness alters the positive effect of species richness on community drought resistance via changing complementarity. Ecological Indicators, 2021, 133: 108464.

2020
1)    Yong-Jun Liu#; Neng-Hu Qiao#; Qing-Yun Diao; Zhongwang Jing; Raja Vukanti; Ping-Li Dai; Yuan Ge*. Thiacloprid exposure perturbs the gut microbiota and reduces the survival status in honeybees. Journal of Hazardous Materials, 2020, 389: 121818.
2)    Congcong Shen#; Anna Gunina#; Yu Luo*; Jianjun Wang; Ji-Zheng He; Yakov Kuzyakov; Andreas Hemp; Aimée T. Classen; Yuan Ge*. Contrasting patterns and drivers of soil bacterial and fungal diversity across a mountain gradient. Environmental Microbiology, 2020, 22(8): 3287-3301.
3)    Yan Yue; Lin Qi; Yan Li; Jichen Wang; Congcong Shen; Yuan Ge*. Negative effects of rare earth oxide nanoparticles of La2O3, Nd2O3, and Gd2O3 on the ammonia-oxidizing microorganisms. Journal of Soils and Sediments, 2020, 20: 3114-3123.

2019
1)    Yan Li#; Zhan Chen#; Ji-Zheng He; Qing Wang; Congcong Shen; Yuan Ge*. Ectomycorrhizal fungi inoculation alleviates simulated acid rain effects on soil ammonia oxidizers and denitrifiers in Masson pine forest. Environmental Microbiology, 2019, 21(1): 299-313.
2)    Lin Qi#; Yuan Ge#*; Tian Xia; Ji-Zheng He; Congcong Shen; Jianlei Wang; Yong-Jun Liu. Rare earth oxide nanoparticles promote soil microbial antibiotic resistance by selectively enriching antibiotic resistance genes. Environmental Science: Nano, 2019, 6(2): 456-466.
3)    Yan Yue; Congcong Shen; Yuan Ge*. Biochar accelerates the removal of tetracyclines and their intermediates by altering soil properties. Journal of Hazardous Materials, 2019, 380: 120821.
4)    Jichen Wang; Jianlei Wang; Geoff Rhodes; Ji-Zheng He; Yuan Ge*. Adaptive responses of comammox Nitrospira and canonical ammonia oxidizers to long-term fertilizations: Implications for the relative contributions of different ammonia oxidizers to soil nitrogen cycling. Science of the Total Environment, 2019, 668: 224-233.
5)    Yao-Qin Sun; Jiang Wang; Congcong Shen; Ji-Zheng He; Yuan Ge*. Plant evenness modulates the effect of plant richness on soil bacterial diversity. Science of the Total Environment, 2019, 662: 8-14.
6)    Congcong Shen; Yu Shi; Kunkun Fan; Jin-Sheng He; Jonathan M. Adams; Yuan Ge*; Haiyan Chu*. Soil pH dominates elevational diversity pattern for bacteria in high elevation alkaline soils on the Tibetan Plateau. FEMS Microbiology Ecology, 2019, 95(2): fiz003.
7)    Congcong Shen; Dawei Ma; Ruibo Sun; Benyao Zhang; Delin Li; Yuan Ge*. Long-term stacking coal promoted soil bacterial richness associated with increased soil organic matter in coal yards of power plants. Journal of Soils and Sediments, 2019, 19(10): 3442-3452.

2018 and before
1)    Yuan Ge; Congcong Shen; Ying Wang; Yao-Qin Sun; Joshua P. Schimel; Jorge L. Gardea-Torresdey; Patricia A. Holden*. Carbonaceous nanomaterials have higher effects on soybean rhizosphere prokaryotic communities during the reproductive growth phase than during vegetative growth. Environmental Science & Technology, 2018, 52(11): 6636-6646.
2)    Yuan Ge; John H. Priester; Monika Mortimer; Chong Hyun Chang; Zhaoxia Ji; Joshua P. Schimel; Patricia A. Holden*. Long-term effects of multiwalled carbon nanotubes and graphene on microbial communities in dry soil. Environmental Science & Technology, 2016, 50(7): 3965-3974.
3)    Yuan Ge; Allison M. Horst; Junyeol Kim; John H. Priester; Zoe S. Welch; Patricia A. Holden. Toxicity of manufactured nanomaterials to microorganisms. In Baoshan Xing; Chad D. Vecitis; Nicola Senesi (Eds), Engineered Nanoparticles and the Environment: Biophysicochemical Processes and and Biotoxicity (pp. 320-346), John Wiley & Sons, 2016, Chapter 17.
4)    孙耀琴; 申聪聪; 葛源*. 典型纳米材料的土壤微生物效应研究进展. 生态毒理学报, 2016, 11(5): 2-13.
5)    Yuan Ge; John H. Priester; Laurie C. Van De Werfhorst; Sharon L. Walker; Roger M. Nisbet; Youn-Joo An; Joshua P. Schimel; Jorge L. Gardea-Torresdey; Patricia A. Holden*. Soybean plants modify metal oxide nanoparticle effects on soil bacterial communities. Environmental Science & Technology, 2014, 48(22): 13489-13496.
6)    Yuan Ge; Joshua P. Schimel; Patricia A. Holden*. Analysis of run-to-run variation of bar-coded pyrosequencing for evaluating bacterial community shifts and individual taxa dynamics. PLoS One, 2014, 9(6): e99414.
7)    Jiang Wang; Yuan Ge*; Tong Chen; Yi Bai; Bao Ying Qian; Chong Bang Zhang. Facilitation drives the positive effects of plant richness on trace metal removal in a biodiversity experiment. PLoS One, 2014, 9(4): e93733.
8)    Yuan Ge; John H. Priester; Laurie C. Van De Werfhorst; Joshua P. Schimel; Patricia A. Holden*. Potential mechanisms and environmental controls of TiO2 nanoparticle effects on soil bacterial communities. Environmental Science & Technology, 2013, 47(24): 14411-14417.
9)    Jiang Wang; Yuan Ge*; Chong B. Zhang; Yi Bai; Zhao K. Du. Dominant functional group effects on the invasion resistance at different resource levels. PLoS One, 2013, 8(10): e77220.
10)    Yuan Ge; Joshua P. Schimel; Patricia A. Holden*. Identification of soil bacteria susceptible to TiO2 and ZnO nanoparticles. Applied and Environmental Microbiology, 2012, 78(18): 6749-6758.
11)    John H. Priester; Yuan Ge; Randall E. Mielke; Allison M. Horst; Shelly Cole Moritz; Katherine Espinosa; Jeff Gelb; Sharon L. Walker; Roger M. Nisbet; Youn-Joo An; Joshua P. Schimel; Reid G. Palmer; Jose A. Hernandez-Viezcas; Lijuan Zhao; Jorge L. Gardea-Torresdey; Patricia A. Holden*. Soybean susceptibility to manufactured nanomaterials with evidence for food quality and soil fertility interruption. Proceedings of the National Academy of Sciences of the United States of America, 2012, 109(37): E2451-E2456.
12)    Yuan Ge; Joshua P. Schimel; Patricia A. Holden*. Evidence for negative effects of TiO2 and ZnO nanoparticles on soil bacterial communities. Environmental Science & Technology, 2011, 45(4): 1659-1664.
13)    Yuan Ge; Chengrong Chen*; Zhihong Xu; Ram Oren; Ji-Zheng He*. The spatial factor, rather than elevated CO2, controls the soil bacterial community in a temperate forest ecosystem. Applied and Environmental Microbiology, 2010, 76(22): 7429-7436.
14)    Yuan Ge; Chengrong Chen*; Zhihong Xu; Simon M. Eldridge; Kwong Yin Chan; Yan He; Ji-Zheng He*. Carbon/nitrogen ratio as a major factor for predicting the effects of organic wastes on soil bacterial communities assessed by DNA-based molecular techniques. Environmental Science and Pollution Research, 2010, 17(3): 807-815.
15)    Ji-Zheng He#*; Yuan Ge#; Zhihong Xu; Chengrong Chen. Linking soil bacterial diversity to ecosystem multifunctionality using backward-elimination boosted trees analysis. Journal of Soils and Sediments, 2009, 9(6): 547-554.
16)    Yuan Ge; Ji-Zheng He*; Yong-Guan Zhu; Jia-Bao Zhang; Zhihong Xu; Li-Mei Zhang; Yuan-Ming Zheng. Differences in soil bacterial diversity: driven by contemporary disturbances or historical contingencies?. The ISME Journal, 2008, 2(3): 254-264.
17)    Yuan Ge; Jia-Bao Zhang; Li-Mei Zhang; Min Yang; Ji-Zheng He*. Long-term fertilization regimes affect bacterial community structure and diversity of an agricultural soil in northern China. Journal of Soils and Sediments, 2008, 8(1): 43-50.
18)    贺纪正*; 葛源. 土壤微生物生物地理学研究进展. 生态学报, 2008, 28(11): 5571-5582.
19)    葛源; 贺纪正*; 郑袁明; 张丽梅; 朱永官. 稳定性同位素探测技术在微生物生态学研究中的应用. 生态学报, 2006, 26(5): 1574-1582.​


指导学生

已指导学生

孙耀琴  博士研究生  071300-生态学  

白雪婷  硕士研究生  071300-生态学  

现指导学生

李艳  博士研究生  071300-生态学  

井忠旺  博士研究生  071300-生态学  

乔能虎  博士研究生  071300-生态学  

李柏键  硕士研究生  077601-环境科学  

曲赛  博士研究生  071300-生态学  

赵冬辉  硕士研究生  077601-环境科学  

房俊楠  博士研究生  071300-生态学  

杜向灯  硕士研究生  077601-环境科学  

聂世清  博士研究生  071300-生态学