基本信息

赵屹  男  研究员 博导  中国科学院计算技术研究所
电子邮件: biozy@ict.ac.cn
通信地址: 北京市海淀区中关村科学院南路6号
邮政编码: 100190

研究领域

医疗人工智能/大数据挖掘/生物信息学

招生信息

   
招生专业
081203-计算机应用技术
招生方向
生物信息学,人工智能,
健康医学大数据挖掘

教育背景

2013-09--2016-07   清华大学   博士
1997-09--2000-07   北京大学   硕士学位

出版信息

   
发表论文
[1] Zhang, Le, Badai, Jiayidaer, Wang, Guan, Ru, Xufang, Song, Wenkai, You, Yujie, He, Jiaojiao, Huang, Suna, Feng, Hua, Chen, Runsheng, Zhao, Yi, Chen, Yujie. Discovering hematoma-stimulated circuits for secondary brain injury after intraventricular hemorrhage by spatial transcriptome analysis. FRONTIERS IN IMMUNOLOGY[J]. 2023, 14: http://dx.doi.org/10.3389/fimmu.2023.1123652.
[2] Zhao LianHe, Zhao yi. Biological knowledge graph-guided investigation of immune therapy response in cancer with graph neural network. Briefings in Bioinformatics[J]. 2023, [3] Yang, Zhen, Xu, Feng, Teschendorff, Andrew E, Zhao, Yi, Yao, Lei, Li, Jian, He, Yungang. Insights into the role of long non-coding RNAs in DNA methylation mediated transcriptional regulation. FRONTIERS IN MOLECULAR BIOSCIENCESnull. 2022, 9: http://dx.doi.org/10.3389/fmolb.2022.1067406.
[4] Wang, Jiajia, Shi, Yirong, Zhou, Honghong, Zhang, Peng, Song, Tingrui, Ying, Zhiye, Yu, Haopeng, Li, Yanyan, Zhao, Yi, Zeng, Xiaoxi, He, Shunmin, Chen, Runsheng. piRBase: integrating piRNA annotation in all aspects. NUCLEIC ACIDS RESEARCH[J]. 2022, 50(D1): D265-D272, http://dx.doi.org/10.1093/nar/gkab1012.
[5] Qiao, Yixuan, Zhao, Lianhe, Luo, Chunlong, Luo, Yufan, Wu, Yang, Li, Shengtong, Bu, Dechao, Zhao, Yi. Multi-modality artificial intelligence in digital pathology. BRIEFINGS IN BIOINFORMATICSnull. 2022, 23(6): http://dx.doi.org/10.1093/bib/bbac367.
[6] Xu, Feng, Wang, Yifan, Ling, Yunchao, Zhou, Chenfen, Wang, Haizhou, Teschendorff, Andrew E, Zhao, Yi, Zhao, Haitao, He, Yungang, Zhang, Guoqing, Yang, Zhen. dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms. GENOMICS PROTEOMICS & BIOINFORMATICS[J]. 2022, 20(3): 446-454, http://dx.doi.org/10.1016/j.gpb.2022.04.006.
[7] Guo, Duancheng, Wang, Yuan, Cheng, Yan, Liao, Shengyou, Hu, Jian, Du, Fang, Xu, Gang, Liu, Yongqiang, Cai, Kathy Q, Cheung, Martin, Wainwright, Brandon J, Lu, Q Richard, Zhao, Yi, Yang, Zengjie. Tumor cells generate astrocyte-like cells that contribute to SHH-driven medulloblastoma relapse. JOURNAL OF EXPERIMENTAL MEDICINE[J]. 2021, 218(9): http://dx.doi.org/10.1084/jem.20202350.
[8] Junya Ning, Yingnan Ye, Dechao Bu, Gang Zhao, Tianqiang Song, Pengpeng Liu, Wenwen Yu, Hailong Wang, Hui Li, Xiubao Ren, Guoguang Ying, Yi Zhao, Jinpu Yu. Imbalance of TGF-β1/BMP-7 pathways induced by M2-polarized macrophages promotes hepatocellular carcinoma aggressiveness. MOLECULAR THERAPY. 2021, 29(6): 2067-2087, http://dx.doi.org/10.1016/j.ymthe.2021.02.016.
[9] Fang, ShuangSang, Dong, Lei, Liu, Liu, Guo, JinCheng, Zhao, LianHe, Zhang, JiaYuan, Bu, DeChao, Liu, XinKui, Huo, PeiPei, Cao, WanChen, Dong, QiongYe, Wu, JiaRui, Zeng, Xiaoxi, Wu, Yang, Zhao, Yi. HERB: a high-throughput experiment- and reference-guided database of traditional Chinese medicine. NUCLEIC ACIDS RESEARCH[J]. 2021, 49(D1): D1197-D1206, http://dx.doi.org/10.1093/nar/gkaa1063.
[10] Guo, JinCheng, Wei, QingShuang, Dong, Lei, Fang, ShuangSang, Li, Feng, Zhao, Yi. Prognostic Value of an Autophagy-Related Five-Gene Signature for Lower-Grade Glioma Patients. FRONTIERS IN ONCOLOGY[J]. 2021, 11: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7985555/.
[11] Zhang, Yuwei, Bu, Dechao, Huo, Peipei, Wang, Zhihao, Rong, Hao, Li, Yanguo, Liu, Jingjia, Ye, Meng, Wu, Yang, Jiang, Zheng, Liao, Qi, Zhao, Yi. ncFANs v2.0: an integrative platform for functional annotation of non-coding RNAs. NUCLEIC ACIDS RESEARCH[J]. 2021, 49(W1): W459-W468, http://dx.doi.org/10.1093/nar/gkab435.
[12] Wu, Yue, Wu, Yang, Wu, Hongwei, Wu, Changxun, Ji, Enhui, Xu, Jing, Zhang, Yi, Wei, Junying, Zhao, Yi, Yang, Hongjun. Systematic Survey of the Alteration of the Faecal Microbiota in Rats With Gastrointestinal Disorder and Modulation by Multicomponent Drugs. FRONTIERS IN PHARMACOLOGY[J]. 2021, 12: 13-, http://dx.doi.org/10.3389/fphar.2021.670335.
[13] Bu, Dechao, Luo, Haitao, Huo, Peipei, Wang, Zhihao, Zhang, Shan, He, Zihao, Wu, Yang, Zhao, Lianhe, Liu, Jingjia, Guo, Jincheng, Fang, Shuangsang, Cao, Wanchen, Yi, Lan, Zhao, Yi, Kong, Lei. KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis. NUCLEIC ACIDS RESEARCH[J]. 2021, 49(W1): W317-W325, http://dx.doi.org/10.1093/nar/gkab447.
[14] Ziyang Li, Shuangsang Fang, Rui Zhang, Lijia Yu, Jiawei Zhang, Dechao Bu, Liang Sun, Yi Zhao, Jinming Li. VarBen: Generating in Silico Reference Data Sets for Clinical Next-Generation Sequencing Bioinformatics Pipeline Evaluation. THE JOURNAL OF MOLECULAR DIAGNOSTICS. 2021, 23(3): 285-299, http://dx.doi.org/10.1016/j.jmoldx.2020.11.010.
[15] Zhao, Lianhe, Wang, Jiajia, Li, Yanyan, Song, Tingrui, Wu, Yang, Fang, Shuangsang, Bu, Dechao, Li, Hui, Sun, Liang, Pei, Dong, Zheng, Yu, Huang, Jianqin, Xu, Mingqing, Chen, Runsheng, Zhao, Yi, He, Shunmin. NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants. NUCLEIC ACIDS RESEARCH[J]. 2021, 49(D1): D165-D171, http://dx.doi.org/10.1093/nar/gkaa1046.
[16] Yang, Kuo, Lu, Kezhi, Wu, Yang, Yu, Jian, Liu, Baoyan, Zhao, Yi, Chen, Jianxin, Zhou, Xuezhong. A network-based machine-learning framework to identify both functional modules and disease genes. HUMAN GENETICS[J]. 2021, 140(6): 897-913, http://dx.doi.org/10.1007/s00439-020-02253-0.
[17] Dechao Bu, Yan Xia, JiaYuan Zhang, Wanchen Cao, Peipei Huo, Zhihao Wang, Zihao He, Linyi Ding, Yang Wu, Shan Zhang, Kai Gao, He Yu, Tiegang Liu, Xia Ding, Xiaohong Gu, Yi Zhao. FangNet: Mining herb hidden knowledge from TCM clinical effective formulas using structure network algorithm. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL[J]. 2021, 19: 62-71, [18] Xue, Yongbiao, Bao, Yiming, Zhang, Zhang, Zhao, Wenming, Xiao, Jingfa, He, Shunmin, Zhang, Guoqing, Li, Yixue, Zhao, Guoping, Chen, Runsheng, Song, Shuhui, Ma, Lina, Zou, Dong, Tian, Dongmei, Li, Cuiping, Zhu, Junwei, Gong, Zheng, Chen, Meili, Wang, Anke, Ma, Yingke, Li, Mengwei, Teng, Xufei, Cui, Ying, Duan, Guangya, Zhang, Mochen, Jin, Tong, Shi, Chengmin, Du, Zhenglin, Zhang, Yadong, Liu, Chuandong, Li, Rujiao, Zeng, Jingyao, Hao, Lili, Jiang, Shuai, Chen, Hua, Han, Dali, Yongbiao, Xue, Zhang, Tao, Kang, Wang, Qu, Jing, Zhang, Weiqi, Liu, GuangHui, Liu, Lin, Zhang, Yang, Niu, Guangyi, Zhu, Tongtong, Feng, Changrui, Liu, Xiaonan, Zhang, Yuansheng, Li, Zhao, Chen, Ruru, Li, Qianpeng, Hua, Zhongyi, Jiang, Chao, Chen, Ziyuan, He, Fangshu, Zhao, Yuyang, Jin, Yan, Huang, Luqi, Yuan, Yuan, Zhou, Chenfen, Xu, Qingwei, He, Sheng, Ye, Wei, Cao, Ruifang, Wang, Pengyu, Ling, Yunchao, Yan, Xing, Wang, Qingzhong, Du, Qiang, Zong, Wenting, Kang, Hongen, Xiong, Zhuang, Huan, Wendi, Zhang, Sirui, Xia, Qiguang, Fan, Xiaojuan, Wang, Zefeng, Chen, Xu, Chen, Tingting, Zhang, Sisi, Tang, Bixia, Dong, Lili, Zhang, Zhewen, Wang, Zhonghuang, Kang, Hailong, Wang, Yanqing, Wu, Song, Wang, Honggen, Chen, Ming, Liu, Chang, Xiong, Yujia, Shao, Xueying, Li, Yanyan, Zhou, Honghong, Chen, Xiaomin, Zheng, Yu, Kang, Quan, Hao, Di, Zhang, Lili, Luo, Huaxia, Hao, Yajing, Zhang, Peng, Nie, Zhi, Yu, Shuhuan, Yang, Fei, Sang, Jian, Li, Zhaohua, Zhang, Xiangquan, Zhou, Qing, Zhai, Shuang, Zhang, Yaping, Wang, Guodong, Zhu, Qianghui, Li, Xin, Li, Menghua, Yan, Jun, Li, Chen, Wang, Zhennan, Wang, Xiangfeng, Liu, Yuanming, Luo, Hong, Wu, Xiaoyuan, Jing, HaiChun, Song, Tinrui, Zhao, Yi, Mehmood, Furrukh, Ali, Shahid, Ali, Amjad, Saleem, Shoaib, Hussain, Irfan, Abbasi, Amir A, Zuo, Zhixiang, Ren, Jian, Zhang, Xinxin, Xiao, Yun, Li, Xia, Tu, Yiran, Xue, Yu, Wu, Wanying, Ji, Peifeng, Zhao, Fangqing, Meng, Xianwen, Peng, Di, Luo, Hao, Gao, Feng, Ning, Wanshan, Lin, Shaofeng, Liu, Teng, Guo, AnYuan, Yuan, Hao, Zhang, Yong E, Tan, Xiaodan, Zhang, Weizhi, Xie, Yubin, Wang, Chenwei, Liu, ChunJie, Yang, DeChang, Tian, Feng, Gao, Ge, Tang, Dachao, Yao, Lan, Cui, Qinghua, An, Ni A, Li, ChuanYun, Luo, XiaoTong. Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. NUCLEIC ACIDS RESEARCH[J]. 2021, 49(D1): D18-D28, http://dx.doi.org/10.1093/nar/gkaa1022.
[19] Teng, Xueyi, Chen, Xiaomin, Xue, Hua, Tang, Yiheng, Zhang, Peng, Kang, Quan, Hao, Yajing, Chen, Runsheng, Zhao, Yi, He, Shunmin. NPInter v4.0: an integrated database of ncRNA interactions. NUCLEIC ACIDS RESEARCH[J]. 2020, 48(D1): D160-D165, http://dx.doi.org/10.1093/nar/gkz969.
[20] Zhang, Zhang, Zhao, Wenming, Xiao, Jingfa, Bao, Yiming, He, Shunmin, Zhang, Guoqing, Li, Yixue, Zhao, Guoping, Chen, Runsheng, Gao, Yang, Zhang, Chao, Yuan, Liyun, Xu, Shuhua, Ning, Zhilin, Lu, Yan, Zeng, Jingyao, Yuan, Na, Zhu, Junwei, Pan, Mengyu, Zhang, Hao, Wang, Qi, Shi, Shuo, Jiang, Meiye, Lu, Mingming, Qian, Qiheng, Gao, Qianwen, Shang, Yunfei, Wang, Jinyue, Du, Zhenglin, Tian, Dongmei, Wang, Pei, Tang, Bixia, Li, Cuiping, Teng, Xufei, Liu, Xiaonan, Zou, Dong, Song, Shuhui, Xiong, Zhuang, Li, Mengwei, Yang, Fei, Ma, Yingke, Sang, Jian, Li, Zhaohua, Li, Rujiao, Wang, Zhonghuang, Zhu, Qianghui, Li, Xin, Zhang, Sisi, Kang, Hailong, Dong, Lili, Ying, Cui, Duan, Guangya, Li, Menghua, Zhi, Xiaoyang, Ling, Yunchao, Cao, Ruifang, Jiang, Zhao, Zhou, Haokui, Lv, Daqing, Liu, Wan, Klenk, HansPeter, Zhang, Yadong, Zhang, Zhewen, Chen, Tingting, Chen, Xu, Wang, Yanqing, Wu, Song, Gong, Zheng, Chen, Meili, Fang, Shuangsang, Zhang, Lili, Guo, Jincheng, Niu, Yiwei, Wu, Yang, Li, Hui, Zhao, Lianhe, Li, Xiyuan, Teng, Xueyi, Sun, Xianhui, Sun, Liang, Zhao, Yi, Wang, Jiajia, Zhang, Peng, Li, Yanyan, Zheng, Yu, Chen, Xiaomin, Xue, Hua, Teng, Yiheng, Kang, Quan, Hao, Yajing, Cao, Jiabao, Liu, Lin, Li, Zhao, Li, Qianpeng, Du, Qiang, Abbasi, Amir A, Shireen, Huma, Pervaiz, Nashaiman, Batool, Fatima, Raza, Rabail Z, Ma, Lina, Niu, Guangyi, Zhang, Yuansheng, Zhu, Tongtong, Hao, Lili, Wang, Guoliang, Yan, Jun, Li, Chen, Wang, Zhennan, Wang, Xiangfeng, Li, Zhonghai, Zhang, Yang, Wang, Houling, Zhang, Yi, Xia, Xinli, Guo, Hongwei, Zhu, Junwen, Zhou, Qing, Kang, Hongen, Lan, Li, Zhang, Xin, Xue, Yongbiao, Sun, Yubin, Zhai, Shuang, Yu, Lei, Sun, Mingyuan, Chen, Huanxin, Hu, Hui, Guo, AnYuan, Lin, Shaofeng, Xue, Yu, Wang, Chenwei, Ning, Wanshan, Zhang, Xinxin, Xiao, Yun, Li, Xia, Tu, Yiran, Wu, Wanying, Ji, Peifeng, Zhao, Fangqing, Luo, Hao, Gao, Feng, Guo, Yaping, Yuan, Hao, Zhang, Yong E, Zhang, Qiong, Zhou, Jiaqi, Huang, Zhou, Cui, Qinghua, Miao, YaRu, Ruan, Chen, Yuan, Chunhui, Chen, Ming, Jin, JinPu, Tian, Feng, Gao, Ge, Shi, Ying, Yao, Lan, Li, Xiangshang, Li, ChuanYun, Tang, Qing, Peng, Di. Database Resources of the National Genomics Data Center in 2020. NUCLEIC ACIDS RESEARCH[J]. 2020, 48(D1): D24-D33, https://www.webofscience.com/wos/woscc/full-record/WOS:000525956700004.
[21] 韩自强, 卜德超, 张策, 吴桂鑫, 邹玉宝, 王水云, 宋雷, 赵屹, 王继征. 肥厚型心肌病可变剪接图谱分析. 中国分子心脏病学杂志[J]. 2020, 20(1): 3249-3254, http://lib.cqvip.com/Qikan/Article/Detail?id=7101502439.
[22] Ye, Yingnan, Guo, Jincheng, Xiao, Pei, Ning, Junya, Zhang, Rui, Liu, Pengpeng, Yu, Wenwen, Xu, Liyan, Zhao, Yi, Yu, Jinpu. Macrophages-induced long noncoding RNA H19 up-regulation triggers and activates the miR-193b/MAPK1 axis and promotes cell aggressiveness in hepatocellular carcinoma. CANCER LETTERS[J]. 2020, 469: 310-322, http://dx.doi.org/10.1016/j.canlet.2019.11.001.
[23] Xiong, Qian, Huang, Sai, Li, YongHui, Lv, Na, Lv, Chao, Ding, Yi, Liu, WenWen, Wang, LiLi, Chen, Yang, Sun, Liang, Zhao, Yi, Liao, ShengYou, Zhang, Michael Q, Zhu, BaoLi, Yu, Li. Single-cell RNA sequencing of t(8;21) acute myeloid leukemia for risk prediction. ONCOLOGY REPORTS[J]. 2020, 43(4): 1278-1288, https://www.webofscience.com/wos/woscc/full-record/WOS:000523753100022.
[24] Wu, Yang, Zhang, Feilong, Yang, Kuo, Fang, Shuangsang, Bu, Dechao, Li, Hui, Sun, Liang, Hu, Hairuo, Gao, Kuo, Wang, Wei, Zhou, Xuezhong, Zhao, Yi, Chen, Jianxin. SymMap: an integrative database of traditional Chinese medicine enhanced by symptom mapping. NUCLEIC ACIDS RESEARCH[J]. 2019, 47(D1): D1110-D1117, https://www.webofscience.com/wos/woscc/full-record/WOS:000462587400152.
[25] Ning, Junya, Zhao, Yi, Ye, Yingnan, Yu, Jinpu. Opposing roles and potential antagonistic mechanism between TGF-beta and BMP pathways: Implications for cancer progression. EBIOMEDICINEnull. 2019, 41: 702-710, https://www.webofscience.com/wos/woscc/full-record/WOS:000464321900080.
[26] Xie, Mengxiao, Wang, Jingzhe, Gong, Wen, Xu, Huiling, Pan, Xiaoyuan, Chen, Yunpeng, Ru, Songwei, Wang, Hui, Chen, Xiaodan, Zhao, Yi, Li, Jing, Yin, Qing, Xia, Sheng, Zhou, Xiaoming, Liu, Xia, Shao, Qixiang. NF-kappa B-driven miR-34a impairs Treg/Th17 balance via targeting Foxp3. JOURNAL OF AUTOIMMUNITY[J]. 2019, 102: 96-113, [27] Shunmin He, Guoqiang Zhang, Jiajia Wang, Yajie Gao, Ruidi Sun, Zhijie Cao, Zhenping Chen, Xiudeng Zheng, Jiao Yuan, Yuewan Luo, Xiaona Wang, Wenxin Zhang, Peng Zhang, Yi Zhao, Chuan He, Yi Tao, Qinmiao Sun, Dahua Chen. 6mA-DNA-binding factor Jumu controls maternal-to-zygotic transition upstream of Zelda. NATURE COMMUNICATIONS[J]. 2019, 10(1): 1-14, http://gooa.las.ac.cn/external/index?type=-1&pid=1534822.
[28] Junya Ning, Yi Zhao, Yingnan Ye, Jinpu Yu. Opposing roles and potential antagonistic mechanism between TGF-β and BMP pathways: Implications for cancer progression. EBIOMEDICINE[J]. 2019, 41: 702-710, http://dx.doi.org/10.1016/j.ebiom.2019.02.033.
[29] Mengxiao Xie, Jingzhe Wang, Wen Gong, Huiling Xu, Xiaoyuan Pan, Yunpeng Chen, Songwei Ru, Hui Wang, Xiaodan Chen, Yi Zhao, Jing Li, Qing Yin, Sheng Xia, Xiaoming Zhou, Xia Liu, Qixiang Shao. NF-κB-driven miR-34a impairs Treg/Th17 balance via targeting Foxp3. JOURNAL OF AUTOIMMUNITY. 2019, 102: 96-113, http://dx.doi.org/10.1016/j.jaut.2019.04.018.
[30] Li, Lin, Bu, Dechao, Zhao, Yi. CircRNAwrap - a flexible pipeline for circRNA identification, transcript prediction, and abundance estimation. FEBS LETTERS[J]. 2019, 593(11): 1179-1189, https://www.webofscience.com/wos/woscc/full-record/WOS:000470956700005.
[31] Sweeney, Blake A, Petrov, Anton I, Burkov, Boris, Finn, Robert D, Bateman, Alex, Szymanski, Maciej, Karlowski, Wojciech M, Gorodkin, Jan, Seemann, Stefan E, Cannone, Jamie J, Gutell, Robin R, Fey, Petra, Basu, Siddhartha, Kay, Simon, Cochrane, Guy, Billis, Kostantinos, Emmert, David, Marygold, Steven J, Huntley, Rachael P, Lovering, Ruth C, Frankish, Adam, Chan, Patricia P, Lowe, Todd M, Bruford, Elspeth, Seal, Ruth, Vandesompele, Jo, Volders, PieterJan, Paraskevopoulou, Maria, Ma, Lina, Zhang, Zhang, GriffithsJones, Sam, Bujnicki, Janusz M, Boccaletto, Pietro, Blake, Judith A, Bult, Carol J, Chen, Runsheng, Zhao, Yi, Wood, Valerie, Rutherford, Kim, Rivas, Elena, Cole, James, Laulederkind, Stanley J F, Shimoyama, Mary, Gillespie, Marc E, OrlicMilacic, Marija, Kalvari, Ioanna, Nawrocki, Eric, Engel, Stacia R, Cherry, J Michael, Berardini, Tanya Z, Hatzigeorgiou, Artemis, Karagkouni, Dimitra, Howe, Kevin, Davis, Paul, Dinger, Marcel, He, Shunmin, Yoshihama, Maki, Kenmochi, Naoya, Stadler, Peter F, Williams, Kelly P, RNAcent Consortium. RNAcentral: a hub of information for non-coding RNA sequences. NUCLEICACIDSRESEARCH[J]. 2019, 47(D1): D221-D229, [32] Guo, JinCheng, Fang, ShuangSang, Wu, Yang, Zhang, JianHua, Chen, Yang, Liu, Jing, Wu, Bo, Wu, JiaRui, Li, EnMin, Xu, LiYan, Sun, Liang, Zhao, Yi. CNIT: a fast and accurate web tool for identifying protein-coding and long non-coding transcripts based on intrinsic sequence composition. NUCLEIC ACIDS RESEARCH[J]. 2019, 47(W1): W516-W522, http://dx.doi.org/10.1093/nar/gkz400.
[33] Zhang, Zhiqiang, Zhao, Yi, Liao, Xiangke, Shi, Wenqiang, Li, Kenli, Zou, Quan, Peng, Shaoliang. Deep learning in omics: a survey and guideline. BRIEFINGS IN FUNCTIONAL GENOMICS[J]. 2019, 18(1): 41-57, http://dx.doi.org/10.1093/bfgp/ely030.
[34] Li, Hui, Xiao, Li, Zhang, Lili, Wu, Jiarui, Wei, Bin, Sun, Ninghui, Zhao, Yi. FSPP: A Tool for Genome-Wide Prediction of smORF-Encoded Peptides and Their Functions. FRONTIERS IN GENETICS[J]. 2018, 9: https://doaj.org/article/2c7668c444d94897b40856e6418ebaea.
[35] Guo, JinCheng, Wu, Yang, Chen, Yang, Pan, Feng, Wu, ZhiYong, Zhang, JiaSheng, Wu, JianYi, Xu, XiuE, Zhao, JianMei, Li, EnMin, Zhao, Yi, Xu, LiYan. Protein-coding genes combined with long noncoding RNA as a novel transcriptome molecular staging model to predict the survival of patients with esophageal squamous cell carcinoma. CANCER COMMUNICATIONS[J]. 2018, 38(1): 50-62, https://doaj.org/article/314ec0e513bd420cb57feecf69551590.
[36] Guo, Runxin, Zhao, Yi, Zou, Quan, Fang, Xiaodong, Peng, Shaoliang. Bioinformatics applications on Apache Spark. GIGASCIENCEnull. 2018, 7(8): https://www.webofscience.com/wos/woscc/full-record/WOS:000444104700001.
[37] 李慧, 赵屹, 孙凝晖. 基于高通量数据与复杂网络的小肽功能预测算法. 高技术通讯[J]. 2018, 28(5): 392-398, http://lib.cqvip.com/Qikan/Article/Detail?id=676203098.
[38] Fang, ShuangSang, Zhang, LiLi, Guo, JinCheng, Niu, YiWei, Wu, Yang, Li, Hui, Zhao, Lian He, Li, Xi Yuan, Teng, Xue Yi, Sun, XianHui, Sun, Liang, Zhang, Michael Q, Chen, RunSheng, Zhao, Yi. NONCODEV5: a comprehensive annotation database for long non-coding RNAs. NUCLEIC ACIDS RESEARCH[J]. 2018, 46(D1): D308-D314, https://www.webofscience.com/wos/woscc/full-record/WOS:000419550700047.
[39] Luo, Haitao, Fang, Shuangsang, Sun, Liang, Liu, Zhiyong, Zhao, Yi. Comprehensive Characterization of the RNA Editomes in Cancer Development and Progression. FRONTIERS IN GENETICS[J]. 2018, 8: https://doaj.org/article/f2597ce71a244b80abc2aac0c6ef38d7.
[40] Wang, Binbin, Xiao, Li, Liu, Yang, Wang, Jing, Liu, Beihong, Li, Tengyan, Ma, Xu, Zhao, Yi. Application of a deep convolutional neural network in the diagnosis of neonatal ocular fundus hemorrhage. BIOSCIENCE REPORTS[J]. 2018, 38(6): https://www.webofscience.com/wos/woscc/full-record/WOS:000454266100019.
[41] Zhao, Shuangtao, Fang, Shuangsang, Liu, Yanhua, Li, Xixi, Liao, Shengyou, Chen, Jinwen, Liu, Jingjia, Zhao, Lianhe, Li, Hui, Zhou, Wei, Shen, Wenzhi, Dong, Xiaoli, Xiang, Rong, Wang, Luhua, Zhao, Yi. The long non-coding RNA NONHSAG026900 predicts prognosis as a favorable biomarker in patients with diffuse large B-cell lymphoma. ONCOTARGET[J]. 2017, 8(21): 34374-34386, https://www.webofscience.com/wos/woscc/full-record/WOS:000402051700035.
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[43] Yang, Zhen, Wu, Liangcai, Wang, Anqiang, Tang, Wei, Zhao, Yi, Zhao, Haitao, Teschendorff, Andrew E. dbDEMC 2.0: updated database of differentially expressed miRNAs in human cancers. NUCLEIC ACIDS RESEARCH[J]. 2017, 45(D1): D812-D818, https://www.webofscience.com/wos/woscc/full-record/WOS:000396575500113.
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[103] Zhao, Yi, Shi, Jin, Zheng, Kai, Wang, Haichuan, Lin, Haibo, Shao, Ling. Allocation Wall: a Limiting Factor of Java Applications on Emerging Multi-core Platforms. ACM SIGPLAN NOTICES[J]. 2009, 44(10): 361-376, https://www.webofscience.com/wos/woscc/full-record/WOS:000271211300020.
[104] Yuan, Xiongying, Liu, Changning, Yang, Pengcheng, He, Shunmin, Liao, Qi, Kang, Shuli, Zhao, Yi. Clustered microRNAs' coordination in regulating protein-protein interaction network. BMC SYSTEMS BIOLOGY[J]. 2009, 3(1): 65-65, http://www.corc.org.cn/handle/1471x/2399167.
[105] 司超增, 单广良, 赵屹. 亚健康在线评测系统的设计开发. 预防医学情报杂志[J]. 2009, 25(5): 385-388, http://lib.cqvip.com/Qikan/Article/Detail?id=30504152.
[106] Gu, Tong J, Yi, Xiang, Zhao, Xi W, Zhao, Yi, Yin, James Q. Alu-directed transcriptional regulation of some novel miRNAs. BMC GENOMICS[J]. 2009, 10(1): http://www.irgrid.ac.cn/handle/1471x/757968.
[107] He, Shunmin, Yang, Zhen, Skogerbo, Geir, Ren, Fei, Cui, Hongliang, Zhao, Haitao, Chen, Runsheng, Zhao, Yi. The Properties and Functions of Virus Encoded microRNA, siRNA, and Other Small Noncoding RNAs. CRITICAL REVIEWS IN MICROBIOLOGY[J]. 2008, 34(3-4): 175-188, http://dx.doi.org/10.1080/10408410802482008.
[108] Huang Wenlong, Liu Taoying, Zhao Yi, IEEE Computer Soc. Query Evaluation and Performance Optimization in Distributed Community Data Sharing System Based on Web Services. 2008 IEEE INTERNATIONAL CONFERENCE ON SERVICES COMPUTING, PROCEEDINGS, VOL 2null. 2008, 541-544, [109] 陈润生. Assessing TF regulatory relationships of divergently transcribed genes. GENOMICS[J]. 2008, 92(67): 316-321, http://dx.doi.org/10.1016/j.ygeno.2008.07.007.
[110] Huang Wenlong, Liu Taoying, Zhao Yi, Pan Y, Huang Z, Xu Z, Rountree N, Lefevre L, Shen H, Hine J. Honeycomb: A Community-based System for Distributed Data Integration and Sharing. PDCAT 2008: NINTH INTERNATIONAL CONFERENCE ON PARALLEL AND DISTRIBUTED COMPUTING, APPLICATIONS AND TECHNOLOGIES, PROCEEDINGSnull. 2008, 107-114, http://dx.doi.org/10.1109/PDCAT.2008.22.
[111] 陈润生. MicroRNA-encoding long non-coding RNAs. BMC GENOMICS[J]. 2008, 9(75): https://doaj.org/article/275af1bd98194f92b73599d2a2a93c03.
[112] Shao, Yi, Sun, Zhenyuan, Sun, Shiwei, Zhao, Yi, Sin, Wan Yee, Yuan, Yanhua, Simpson, Andrew J, Old, Lloyd J, Sang, Xinting, Mao, Yilei, Xie, Yong, Huang, Jiefu, Zhao, Haitao. Identification and expression analysis of novel LAGE-1 alleles with single nucleotide polymorphisms in cancer patients. JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY[J]. 2008, 134(4): 495-502, https://www.webofscience.com/wos/woscc/full-record/WOS:000253572000009.
[113] 陈润生. MicroRNA regulation of messenger-like noncoding RNAs: a network of mutual microRNA control. TRENDS IN GENETICS[J]. 2008, 24(72): 323-327, http://dx.doi.org/10.1016/j.tig.2008.04.004.
[114] 杨鹏程, 陈明杰, 茹松伟, 赵屹, 刘伟. microRNA调控的生物网络. 生命科学[J]. 2008, 20(4): 661-666, http://lib.cqvip.com/Qikan/Article/Detail?id=28190874.
[115] 陈润生. 用生物信息学方法发现跨染色体剪接的嵌合5′/3′UTRs. 科学通报[J]. 2004, 49(8): 755-758, http://lib.cqvip.com/Qikan/Article/Detail?id=1.5675721E7.

科研活动

   
科研项目
( 1 ) 非编码RNA调控网络及功能研究, 主持, 部委级, 2011-10--2013-10
( 2 ) 蛋白质组海量质谱数据的解析及其在人类基因组注释中的应用, 主持, 国家级, 2010-01--2014-12
( 3 ) 病毒性肝炎恶性转化的多元调控网络研究, 主持, 国家级, 2013-01--2015-12
( 4 ) 非编码RNA参与的生物网络分析, 主持, 国家级, 2011-01--2013-12
( 5 ) siRNA药物设计软件研发, 主持, 国家级, 2012-11--2015-12
( 6 ) 基于高通量测序数据的长非编码RNA调控网络及在癌症中的应用, 主持, 国家级, 2014-01--2017-12
( 7 ) 基础医学科学数据中心共建项目, 主持, 国家级, 2016-06--2017-06
( 8 ) 肝癌极高危人群队列的建立及早期诊断与预警研究, 参与, 国家级, 2015-04--2016-12
( 9 ) 基于不同测序策略的长非编码RNA拼接、鉴定算法和功能注释的系统性研究, 主持, 国家级, 2018-01--2020-12
( 10 ) 后基因组时代的高通量生命多组学 数据分析算法研究, 主持, 市地级, 2018-01--2019-12
( 11 ) 特色经济林重要性状形成与调控-NGS数据分析算法研究, 主持, 国家级, 2019-01--2021-12

指导学生

已指导学生

余鲲涛  硕士研究生  081202-计算机软件与理论  

解朝勇  硕士研究生  081203-计算机应用技术  

谭程夫  硕士研究生  081203-计算机应用技术  

李明  硕士研究生  081201-计算机系统结构  

杨瑞  硕士研究生  081203-计算机应用技术  

朱城  硕士研究生  081203-计算机应用技术  

李慧  博士研究生  081201-计算机系统结构  

现指导学生

罗纯龙  博士研究生  081203-计算机应用技术  

刘阳  硕士研究生  081203-计算机应用技术  

齐晓宁  硕士研究生  081203-计算机应用技术  

乔艺璇  博士研究生  081203-计算机应用技术  

罗宇凡  博士研究生  081203-计算机应用技术