微生物大数据

微生物数据挖掘方法

2019-10--中国科学院微生物研究所   正高级工程师
2014-07--2019-10   中国科学院微生物研究所   高级工程师
2010-09--2016-12   江南大学   博士
2008-11--2014-07   中国科学院微生物研究所   工程师
2005-10--2008-11   中国科学院微生物研究所   助理工程师
2004-09--2005-09   比利时鲁汶大学（KULeuven）   硕士学位
2000-09--2004-09   北京工商大学   学士学位

   

2019-10~现在, 中国科学院微生物研究所, 正高级工程师
2014-07~2019-10,中国科学院微生物研究所, 高级工程师
2008-11~2014-07,中国科学院微生物研究所, 工程师
2005-10~2008-11,中国科学院微生物研究所, 助理工程师

2027-01-01-今,世界微生物数据中心（WDCM）, 秘书长
2025-11-20-今,中国性病艾滋病防治协会病毒学分委会, 委员
2025-10-09-今,中国科学院计算机网络信息中心, 行业导师
2025-09-01-今,ISO/TC 215 / SC1 / WG1 工作组, 工作组组员
2025-09-01-今,中国疾病预防控制中心国家免疫规划技术-肺炎克雷伯菌疾病（疫苗）工作组成员, 专家组成成员
2024-10-15-今,中华预防医学会细菌性传染病监测与防止工作委员会, 委员
2023-03-01-今,中国初级卫生保健基金会病原检测专业委员会, 常务委员

   

   

1. An ensemble pipeline, PhageHost, for phage tail fiber discovery and accurate Klebsiella pneumoniae host prediction using protein language models,CELL REPORTS,2026
2. VarEPS-MPXV: A risk evaluation system for observed and virtual variations in mpox virus genomes,HLIFE,2025
3. Large-scale analysis of SARS-CoV-2 genomic data from sewage using eVarEPS reveals that amino acid mutations detected in sewage provide an early warning on population prevalence,WATER RESEARCH,2025
4. The epidemiology and hypervirulence of Klebsiella pneumoniae ST23 unveil epidemic risks in China and worldwide,THE LANCET REGIONAL HEALTH-WESTERN PACIFIC,2025
5. CHIKVdb: A comprehensive genomic resource for chikungunya virus surveillance and outbreak response,HLIFE,2025
6. Unveiling the landscape of prokaryotic global regulators through deep protein language models,MSYSTEM,2025
7. gcMeta 2025: a global repository of metagenome-assembled genomes enabling cross-ecosystem microbial discovery and function research,NUCLEIC ACIDS RESEARCH,2025
8.  hAb-Convergent: an antibody rearrangement analysis system for therapeutic antibody engineering based on convergent evolution, NUCLEIC ACIDS RESEARCH, 2025
9. A secure visualization platform for pathogenic genome analysis with an accurate reference database,BIOSAFETY AND HEALTH,2024
10.  Data-Driven Engineering of Phages with Tunable Capsule Tropism for Klebsiella pneumoniae, ADVANCED SCIENCE, 2024
11.  PIPdb: a comprehensive plasmid sequence resource for tracking the horizontal transfer of pathogenic factors and antimicrobial resistance genes, NUCLEIC ACIDS RESEARCH, 2024
12.  gcPathogen: a comprehensive genomic resource of human pathogens for public health, NUCLEIC ACIDS RESEARCH, 2024
13.  GCM and gcType in 2024: comprehensive resources for microbial strains and genomic data, NUCLEIC ACIDS RESEARCH, 2024
14.  VarEPS-Influ:an risk evaluation system of occurred and virtual variations of influenza virus genomes, NUCLEIC ACIDS RESEARCH, 2023
15. acCov: linked open data for alobal coronavirus studies MlEE 2022
16. Fungal names: a comprehensive nomenclatural repository and knowledgeeorfunOmy,NUCLEIC ACIDEApcu2017
17. gcType: a high-quality type strain genome database for microbial phvlogenetic and functional research NucLEIC ACIDS RESEARCH 20218
18. VarEPS an evaluation and nrewaming sstem ofknown and vitualvariations of SABS Coy2 nenomes NuCLEC ACIDS BESEABCH20219.
19. gcMeta: a Global Catalogue of Metagenomics plaform to support the archiving, standardization and analysis of microbiome data, NuCLEIC ACID RESEARCH,2019

   

（ 1 ） 我国传统膳食营养组学及肠道微生物组大数据分析 传染病多源数据智能治理技术研究及数据中台建设, 负责人, 国家任务, 2025-12--2028-11
（ 2 ） 全球微生物资源目录体系建设及应用示范, 负责人, 中国科学院计划, 2022-01--2023-12
（ 3 ） 微生物科学数据管理与挖掘关键技术与应用, 负责人, 国家任务, 2021-12--2024-12
（ 4 ） 我国传统膳食营养组学及肠道微生物组大数据分析, 负责人, 国家任务, 2017-07--2020-12