基本信息
山红艳 女 博导 中国科学院植物研究所
电子邮件: shanhongyan@ibcas.ac.cn
通信地址: 北京市香山南辛村20号
邮政编码: 100093
招生信息
招生专业
071001-植物学
招生方向
花的进化和发育
教育背景
2002-09--2006-07 中国科学院植物研究所 博士1999-09--2002-07 东北师范大学 硕士1995-09--1999-07 东北师范大学 学士
工作经历
工作简历
2023-03~现在, 中国科学院植物研究所, 研究员2010-01~2023-02,中国科学院植物研究所, 副研究员2006-11~2009-12,中国科学院植物研究所, 助理研究员
出版信息
发表论文
[1] Cheng, Jie, Yao, Xu, Li, Xukun, Yue, Liang, Duan, Xiaoshan, Li, Boka, Fu, Xuehao, Li, Shuixian, Shan, Hongyan, Yin, Xiaofeng, Whitewoods, Christopher, Coen, Enrico, Kong, Hongzhi. Diversification of ranunculaceous petals in shape supports a generalized model for plant lateral organ morphogenesis and evolution. SCIENCE ADVANCES[J]. 2023, 9(16): eadf8049, https://www.science.org/doi/10.1126/sciadv.adf8049.[2] Yuan, Yi, Li, Xuan, Yao, Xu, Fu, Xuehao, Cheng, Jie, Shan, Hongyan, Yin, Xiaofeng, Kong, Hongzhi. Mechanisms underlying the formation of complex color patterns on Nigella orientalis (Ranunculaceae) petals. NEW PHYTOLOGIST[J]. 2023, 237(6): 2450-2466, https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.18681.[3] Zhao, Huiqi, Liao, Hong, Li, Shuixian, Zhang, Rui, Dai, Jing, Ma, Pengrui, Wang, Tianpeng, Wang, Meimei, Yuan, Yi, Fu, Xuehao, Cheng, Jie, Duan, Xiaoshan, Xie, Yanru, Zhang, Peng, Kong, Hongzhi, Shan, Hongyan. Delphinieae flowers originated from the rewiring of interactions between duplicated and diversified floral organ identity and symmetry genes. PLANT CELL[J]. 2023, [4] Yuan, Yi, Li, Xuan, Yao, Xu, Fu, Xuehao, Cheng, Jie, Shan, Hongyan, Yin, Xiaofeng, Kong, Hongzhi. Mechanisms underlying the formation of complex color patterns on Nigella orientalis (Ranunculaceae) petals. NEW PHYTOLOGIST[J]. 2023, 237(6): 2450-2466, http://dx.doi.org/10.1111/nph.18681.[5] Fu, Xuehao, Shan, Hongyan, Yao, Xu, Cheng, Jie, Jiang, Yongchao, Yin, Xiaofeng, Kong, Hongzhi. Petal development and elaboration. JOURNAL OF EXPERIMENTAL BOTANY[J]. 2022, 73(11): 3308-3318, https://academic.oup.com/jxb/article/73/11/3308/6547097.[6] 薛成, 李波卡, 雷天宇, 山红艳, 孔宏智. 生物多样性起源与进化研究进展. 生物多样性[J]. 2022, 30(10): 34-47, http://lib.cqvip.com/Qikan/Article/Detail?id=7108625089.[7] Shan, Hongyan, Kong, Hongzhi. The genome of Ginkgo biloba refined. NATURE PLANTS[J]. 2021, 7(6): 714-715, [8] Liuyu Qin, Yiheng Hu, Jinpeng Wang, Xiaoliang Wang, Ran Zhao, Hongyan Shan, Kunpeng Li, Peng Xu, Hanying Wu, Xueqing Yan, Lumei Liu, Xin Yi, Stefan Wanke, John E Bowers, James H LeebensMack, Claude W dePamphilis, Pamela S Soltis, Douglas E Soltis, Hongzhi Kong, Yuannian Jiao. Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome. NATURE PLANTS[J]. 2021, 7(9): 1239-1253, [9] Liao, Hong, Fu, Xuehao, Zhao, Huiqi, Cheng, Jie, Zhang, Rui, Yao, Xu, Duan, Xiaoshan, Shan, Hongyan, Kong, Hongzhi. The morphology, molecular development and ecological function of pseudonectaries on Nigella damascena (Ranunculaceae) petals. NATURE COMMUNICATIONS[J]. 2020, 11(1): [10] Zhang, Rui, Fu, Xuehao, Zhao, Caiyao, Cheng, Jie, Liao, Hong, Wang, Peipei, Yao, Xu, Duan, Xiaoshan, Yuan, Yi, Xu, Guixia, Kramer, Elena M, Shan, Hongyan, Kong, Hongzhi. Identification of the Key Regulatory Genes Involved in Elaborate Petal Development and Specialized Character Formation in Nigella damascena (Ranunculaceae)(OPEN). PLANT CELL[J]. 2020, 32(10): 3095-3112, http://dx.doi.org/10.1105/tpc.20.00330.[11] Duan, Xiaoshan, Zhao, Caiyao, Jiang, Yongchao, Zhang, Rui, Shan, Hongyan, Kong, Hongzhi. Parallel evolution of apetalous lineages within the buttercup family (Ranunculaceae): outward expansion ofAGAMOUS1, rather than disruption ofAPETALA3-3. PLANT JOURNAL[J]. 2020, 104(5): 1169-1181, http://dx.doi.org/10.1111/tpj.14985.[12] Zhong, Yanting, Pan, Xiaoying, Wang, Ruifeng, Xu, Jiuliang, Guo, Jingyu, Yang, Tingxue, Zhao, Jianyu, Nadeem, Faisal, Liu, Xiaoting, Shan, Hongyan, Xu, Yanjun, Li, Xuexian. ZmCCD10a Encodes a Distinct Type of Carotenoid Cleavage Dioxygenase and Enhances Plant Tolerance to Low Phosphate. PLANT PHYSIOLOGY[J]. 2020, 184(1): 374-392, https://www.webofscience.com/wos/woscc/full-record/WOS:000585825000034.[13] Jiang, Yongchao, Wang, Meimei, Zhang, Rui, Xie, Jinghe, Duan, Xiaoshan, Shan, Hongyan, Xu, Guixia, Kong, Hongzhi. Identification of the target genes of AqAPETALA3-3 (AqAP3-3) in Aquilegia coerulea (Ranunculaceae) helps understand the molecular bases of the conserved and nonconserved features of petals. NEW PHYTOLOGIST[J]. 2020, 227(4): 1235-1248, http://dx.doi.org/10.1111/nph.16601.[14] Yan, Shuangshuang, Ning, Kang, Wang, Zhongyi, Liu, Xiaofeng, Zhong, Yanting, Ding, Lian, Zi, Hailing, Cheng, Zhihua, Li, Xuexian, Shan, Hongyan, Lv, Qingyang, Luo, Laixin, Liu, Renyi, Yan, Liying, Zhou, Zhaoyang, Lucas, William John, Zhang, Xiaolan. CsIVP functions in vasculature development and downy mildew resistance in cucumber. PLOS BIOLOGY[J]. 2020, 18(3): http://dx.doi.org/10.1371/journal.pbio.3000671.[15] Zhai, Wei, Duan, Xiaoshan, Zhang, Rui, Guo, Chunce, Li, Lin, Xu, Guixia, Shan, Hongyan, Kong, Hongzhi, Ren, Yi. Chloroplast genomic data provide new and robust insights into the phylogeny and evolution of the Ranunculaceae. MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2019, 135: 12-21, http://dx.doi.org/10.1016/j.ympev.2019.02.024.[16] Shan, Hongyan, Cheng, Jie, Zhang, Rui, Yao, Xu, Kong, Hongzhi. Developmental mechanisms involved in the diversification of flowers. NATURE PLANTS[J]. 2019, 5(9): 917-923, http://dx.doi.org/10.1038/s41477-019-0498-5.[17] Yao, Xu, Zhang, Wengen, Duan, Xiaoshan, Yuan, Yi, Zhang, Rui, Shan, Hongyan, Kong, Hongzhi. The making of elaborate petals in Nigella through developmental repatterning. NEW PHYTOLOGIST[J]. 2019, 223(1): 385-396, [18] 王宏哲, 张睿, 程劼, 段晓姗, 赵慧琪, 山红艳, 孔宏智. 花基本结构的多样性及其分子机制. 中国科学:生命科学[J]. 2019, 292-300, https://www.sciengine.com/doi/10.1360/N052018-00219.[19] Alex Harkess, Jinsong Zhou, Chunyan Xu, John E Bowers, Ron Van der Hulst, Saravanaraj Ayyampalayam, Francesco Mercati, Paolo Riccardi, Michael R McKain, Atul Kakrana, Haibao Tang, Jeremy Ray, John Groenendijk, Siwaret Arikit, Sandra M Mathioni, Mayumi Nakano, Hongyan Shan, Alexa TelgmannRauber, Akira Kanno, Zhen Yue, Haixin Chen, Wenqi Li, Yanling Chen, Xiangyang Xu, Yueping Zhang, Shaochun Luo, Helong Chen, Jianming Gao, Zichao Mao, J Chris Pires, Meizhong Luo, Dave Kudrna, Rod A Wing, Blake C Meyers, Kexian Yi, Hongzhi Kong, Pierre Lavrijsen, Francesco Sunseri, Agostino Falavigna, Yin Ye, James H LeebensMack, Guangyu Chen. The asparagus genome sheds light on the origin and evolution of a young Y chromosome. NATURE COMMUNICATIONS[J]. 2017, 8(1): http://ir.ibcas.ac.cn/handle/2S10CLM1/15450.[20] 山红艳, 孔宏智. 花是如何起源的?. 科学通报[J]. 2017, 62(21): 2323-2334, [21] 肖桂青, 山红艳, 李强, 李为民, 温明章, 杜全生, 薛岚. 2016年度国家自然科学基金植物学学科项目资助概况和分析. 中国科学基金[J]. 2017, 31(2): 144-149, http://lib.cqvip.com/Qikan/Article/Detail?id=671662138.[22] Wang, Peipei, Liao, Hong, Zhang, Wengen, Yu, Xianxian, Zhang, Rui, Shan, Hongyan, Duan, Xiaoshan, Yao, Xu, Kong, Hongzhi. Flexibility in the structure of spiral flowers and its underlying mechanisms. NATURE PLANTS[J]. 2016, 2(1): http://ir.ibcas.ac.cn/handle/2S10CLM1/12228.[23] 山红艳, 王文国, 李为民, 温明章, 杜全生. 国家自然科学基金加强资助植物分类学策略成效分析. 中国科学基金[J]. 2016, 30(6): 556-562, http://lib.cqvip.com/Qikan/Article/Detail?id=670696216.[24] Yu, Xianxian, Duan, Xiaoshan, Zhang, Rui, Fu, Xuehao, Ye, Lingling, Kong, Hongzhi, Xu, Guixia, Shan, Hongyan. Prevalent Exon-Intron Structural Changes in the APETALA1/FRUITFULL, SEPALLATA, AGAMOUS-LIKE6, and FLOWERING LOCUS C MADS-Box Gene Subfamilies Provide New Insights into Their Evolution. FRONTIERS IN PLANT SCIENCE[J]. 2016, 7(-): http://ir.ibcas.ac.cn/handle/2S10CLM1/12373.[25] Lingling Ye, Bin Wang, Wengen Zhang, Hongyan Shan, Hongzhi Kong. Gains and Losses of Cis-regulatory Elements Led to Divergence of the Arabidopsis APETALA1 and CAULIFLOWER Duplicate Genes in the Time, Space, and Level of Expression and Regulation of One Paralog by the Other 1 OPEN. PLANT PHYSIOLOGY. 2016, 171(2): 1055-1069, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4902614/.[26] Liao, Irene T, Shan, Hongyan, Xu, Guixia, Zhang, Rui. Bridging evolution and development in plants. NEW PHYTOLOGIST. 2016, 212(4): 827-830, http://ir.ibcas.ac.cn/handle/2S10CLM1/12417.[27] Harkess, Alex, Mercati, Francesco, Shan, HongYan, Sunseri, Francesco, Falavigna, Agostino, LeebensMack, Jim. Sex-biased gene expression in dioecious garden asparagus (Asparagus officinalis). NEW PHYTOLOGIST[J]. 2015, 207(3): 883-892, https://www.webofscience.com/wos/woscc/full-record/WOS:000357824400037.[28] Li, Lin, Yu, XianXian, Guo, ChunCe, Duan, XiaoShan, Shan, HongYan, Zhang, Rui, Xu, GuiXia, Kong, HongZhi. Interactions among proteins of floral MADS-box genes in Nuphar pumila (Nymphaeaceae) and the most recent common ancestor of extant angiosperms help understand the underlying mechanisms of the origin of the flower. JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2015, 53(4): 285-296, http://dx.doi.org/10.1111/jse.12148.[29] Li, Hao, Meng, Fanrui, Guo, Chunce, Wang, Yingxiang, Xie, Xiaojing, Zhu, Tiansheng, Zhou, Shuigeng, Ma, Hong, Shan, Hongyan, Kong, Hongzhi. MeioBase: acomprehensive database for meiosis. FRONTIERS IN PLANT SCIENCE[J]. 2014, 5(728): https://doaj.org/article/80a9e9b6d5f74faa9fdf6ba61b439141.[30] Jia, RuiDong, Guo, ChunCe, Xu, GuiXia, Shan, HongYan, Kong, HongZhi. Evolution of the cyclin gene family in plants. JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2014, 52(5): 651-659, http://ir.ibcas.ac.cn/handle/2S10CLM1/12232.[31] 张睿, 国春策, 山红艳, 孔宏智. 发育重塑与生物多样性. 生物多样性[J]. 2014, 22(1): 66-71, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=5051166&detailType=1.[32] 国春策, 张睿, 山红艳, 孔宏智. 调控进化与形态多样性. 生物多样性[J]. 2014, 22(1): 72-79, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=5051167&detailType=1.[33] Zhang, Rui, Guo, Chunce, Zhang, Wengen, Wang, Peipei, Li, Lin, Duan, Xiaoshan, Du, Qinggao, Zhao, Liang, Shan, Hongyan, Hodges, Scott A, Kramer, Elena M, Ren, Yi, Kong, Hongzhi. Disruption of the petal identity gene APETALA3-3 is highly correlated with loss of petals within the buttercup family (Ranunculaceae). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2013, 110(13): 5074-5079, http://ir.ibcas.ac.cn/handle/2S10CLM1/16987.[34] Zhang, Ning, Zeng, Liping, Shan, Hongyan, Ma, Hong. Highly conserved low-copy nuclear genes as effective markers for phylogenetic analyses in angiosperms. NEW PHYTOLOGIST. 2012, 195(4): 923-937, http://ir.ibcas.ac.cn/handle/2S10CLM1/15416.[35] Hu, Jin, Zhang, Jian, Shan, Hongyan, Chen, Zhiduan. Expression of floral MADS-box genes in Sinofranchetia chinensis (Lardizabalaceae): implications for the nature of the nectar leaves. ANNALS OF BOTANY[J]. 2012, 110(1): 57-69, http://dx.doi.org/10.1093/aob/mcs104.[36] Wang, Bin, Zhang, Ning, Guo, ChunCe, Xu, GuiXia, Kong, HongZhi, Shan, HongYan. Evolutionary divergence of the APETALA1 and CAULIFLOWER proteins. JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2012, 50(6): 502-511, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=4680876&detailType=1.[37] Xu, Guixia, Guo, Chunce, Shan, Hongyan, Kong, Hongzhi. Divergence of duplicate genes in exon-intron structure. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2012, 109(4): 1187-1192, http://ir.ibcas.ac.cn/handle/2S10CLM1/15383.[38] Liu, Yang, Guo, ChunCe, Xu, GuiXia, Shan, HongYan, Kong, HongZhi. Evolutionary pattern of the regulatory network for flower development: Insights gained from a comparison of two Arabidopsis species. JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2011, 49(6): 528-538, http://ir.ibcas.ac.cn/handle/2S10CLM1/13176.[39] Liu, Cuijing, Zhang, Jian, Zhang, Ning, Shan, Hongyan, Su, Kunmei, Zhang, Jisi, Meng, Zheng, Kong, Hongzhi, Chen, Zhiduan. Interactions among Proteins of Floral MADS-Box Genes in Basal Eudicots: Implications for Evolution of the Regulatory Network for Flower Development. MOLECULAR BIOLOGY AND EVOLUTION[J]. 2010, 27(7): 1598-1611, http://dx.doi.org/10.1093/molbev/msq044.[40] Shan, Hongyan, Zahn, Laura, Guindon, Stephane, Wall, P Kerr, Kong, Hongzhi, Ma, Hong, dePamphilis, Claude W, LeebensMack, Jim. Evolution of Plant MADS Box Transcription Factors: Evidence for Shifts in Selection Associated with Early Angiosperm Diversification and Concerted Gene Duplications. MOLECULAR BIOLOGY AND EVOLUTION[J]. 2009, 26(10): 2229-2244, http://ir.ibcas.ac.cn/handle/151111/4517.[41] Su, Kunmei, Zhao, Suzhen, Shan, Hongyan, Kong, Hongzhi, Lu, Wenliang, Theissen, Guenter, Chen, Zhiduan, Meng, Zheng. The MIK region rather than the C-terminal domain of AP3-like class B floral homeotic proteins determines functional specificity in the development and evolution of petals. NEW PHYTOLOGIST[J]. 2008, 178(3): 544-558, http://ir.ibcas.ac.cn/handle/151111/4893.[42] 山红艳. 形态性状、分子性状与同源性. 植物学通报[J]. 2007, 24(1): 71-79, http://lib.cqvip.com/Qikan/Article/Detail?id=23699753.[43] Shan, Hongyan, Zhan, Ning, Liu, Cuijing, Xu, Guixia, Zhang, Jian, Chen, Zhiduan, Kong, Hongzhi. Patterns of gene duplication and functional diversification during the evolution of the AP1/SQUA subfamily of plant MADS-box genes. MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2007, 44(1): 26-41, http://dx.doi.org/10.1016/j.ympev.2007.02.016.[44] Shan, Hongyan, Su, Kunmei, Lu, Wenliang, Kong, Hongzhi, Chen, Zhiduan, Meng, Zheng. Conservation and divergence of candidate class B genes in Akebia trifoliata (Lardizabalaceae). DEVELOPMENT GENES AND EVOLUTION[J]. 2006, 216(12): 785-795, http://dx.doi.org/10.1007/s00427-006-0107-2.[45] Shan, HY, Li, XW, Li, D, Shao, SQ, Liu, B. Differential expression of specific proteins during in vitro tomato organogenesis. RUSSIAN JOURNAL OF PLANT PHYSIOLOGY[J]. 2004, 51(3): 379-385, https://www.webofscience.com/wos/woscc/full-record/WOS:000221842500012.[46] 山红艳, 邵素清, 李喜文, 李丹. 美国叶用莴苣的组织培养与植株再生. 植物生理学通讯[J]. 2003, 39(2): 148, http://lib.cqvip.com/Qikan/Article/Detail?id=7816048.
科研活动
科研项目
( 1 ) 花和花器官起源的分子机制研究, 负责人, 国家任务, 2016-01--2019-12( 2 ) 花起源的分子机制——基于LEAFY类基因和花发育MADS-box基因的调控进化研究, 负责人, 国家任务, 2020-01--2023-12( 3 ) 花器官身份基因在蛋白质水平上的互作及其进化研究, 负责人, 国家任务, 2011-01--2013-12( 4 ) 核心真双子叶植物中euFUL型MADS-box基因的功能和进化, 负责人, 国家任务, 2009-01--2011-12
指导学生
已指导学生
王天鹏 硕士研究生 071001-植物学