微生物组、噬菌体组、噬菌体合成生物学以及应用噬菌体防治耐药菌的应用研究。

   

微生物学，宏基因组学，生物信息学
噬菌体

2009-06--2011-04   加州大学圣迭戈分校   博士后
2005-09--2009-04   中国科学院微生物研究所   博士
2001-09--2004-07   山东农业大学   硕士
1997-09--2001-07   山东农业大学   学士

2015-9 至 今， 中国科学院深圳先进技术研究院， 副研究员、研究员

2011-05 至 2015-09， 纽约大学， 医学院， 研究科学家

1. Shengjian Yuan*, Heng Zhu*, Menghao Yu*, Huizhen Jia, Shiwen Peng, Yingfei Ma. Discovery of human gut phage-encoded anti-CRISPR proteins unveils diverse mechanisms for phages to evade type II CRISPR immunity. Cell Host & Microbe (2026)

2. Menghao Yu, Yunmeng Chu, Yongming Wang, Luofei Mo, Xin Tan, Shun Guo, Shengjian Yuan, Yingfei Ma. Metagenomic analysis reveals gut phage diversity across three mammalian models. Microbiome (2025)

3. Ziqiang Liu*, Xin Tan*, #, Min Xiong, Shitong Lu, Yongqing Yang, Heng Zhu, Jieqiong Zhang, Xiangying Luo, Caiyun Zhou, Shujiang Wei, Ning Zhou, Xueyan Liu, Changqing Bai, Yongjun Pan#, Yingfei Ma#. Efficacy of precisely tailored phage cocktails targeting carbapenem-resistant Acinetobacter baumannii reveals evolutionary trade-offs: a proof-of-concept study. EBioMedicine (2025)

4. Yan Huang, Teng Wang, Yingfei Ma. Gut microbiome: Temperate and latent phages are dominant in the human gut. Curr Biol (2025)

5. Ling Chen*, Zhipeng Huang*, Mathias Middelboe, Deng Deng, Yingfei Ma. Synergistic effects of commensals and phage predation in suppressing colonization by pathogenic Vibrio parahaemolyticus. Npj Biofilms Microbi (2025)

6. Xin Tan*, Kai Chen*, Zhihuan Jiang, Ziqiang Liu, Siyun Wang, Yong Ying, Jieqiong Zhang, Shengjian Yuan, Zhipeng Huang, Ruyue Gao, Min Zhao, Aoting Weng, Yongqing Yang, Huilong Luo, Daizhou Zhang, Yingfei Ma. Evaluation of the impact of repeated intravenous phage doses on mammalian host-phage interactions. J Virol (2024)

7. Juntao Shen, Jieqiong Zhang, Luofei Mo, Yanchen Li, Yake Li, Cun Li, Xiaoxian Kuang, Zining Tao, Zepeng Qu, Lu Wu, Junyu Chen, Shiying Liu, Linfang Zeng, Zexi He, Zuohong Chen, Yu Deng, Tong Zhang, Bing Li, Lei Dai#, Yingfei Ma#. Large-scale phage cultivation for commensal human gut bacteria. Cell Host & Microbe (2023).

8. Lili Yang, Guoqin Mai, Zheng Hu, Haokui Zhou, Lei Dai, Ziqing Deng, Yingfei Ma. Global transmission of broad-host-range plasmids derived from the human gut microbiome. Nucleic Acids Research (2023).

9. Ran Li*, Yongming Wang*, Han Hu, Yan Tan, Yingfei Ma. Metagenomic analysis reveals unexplored diversity of archaeal virome in the human gut. Nat Commun (2022).

10. Shengjian Yuan, Juan Shi, Jianrong Jiang, Yingfei Ma. Genome-scale top-down strategy to generate viable genome-reduced phages. Nucleic Acids Research (2022).