分子生态学方向：一、长期专注于温带荒漠植物的进化历史和适应性机理，结合群体基因组学研究荒漠建群种的进化历史，探讨亚洲内陆干旱区的时空演化对荒漠生态系统稳定性的影响；二、以异质性环境分布的植物为材料，利用多组学解析生态物种形成的遗传基础。

干旱区生态农业方向：利用多组学技术挖掘荒漠资源植物适应极端环境的分子代谢机制，解析表型变异、代谢物累计和营养代谢的遗传机制，为荒漠药用植物资源驯化和育种提供核心种质资源，探讨规模化应用的生态经济效益，为干旱区生态建设和农业发展提供新模式。

2020年拟招收2名博士生，1名负责沙蓬核心种质资源评价和遗传定位；1名负责沙蓬应用标准化及其无抗养殖中的应用基础。

拟招收1名硕士生，负责沙蓬药用成分差异形成的分子生态基础。

071300-生态学
071007-遗传学
070501-自然地理学

分子生态，生态遗传学，农业生态学
群体遗传学，数量遗传学，作物遗传育种，进化遗传学
植物地理，分子谱系地理学，干旱区演化

2003-09--2006-11   中国科学院植物研究所   理学博士，植物学专业
2000-09--2003-08   东北大学和中科院植物所   理学硕士，物理化学专业

2006 中国科学院植物研究所 植物学专业博士研究生

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2006 中国科学院植物研究所 植物学专业博士

   

2008-09~2011-06,瑞典Uppsalal University进化生物学中心, Researcher
2006-11~2008-08,瑞典Umea University生态与环境科学系, 博士后
2000-05~2000-08,沈阳天润化工有限公司, 总经理助理
1998-07~2000-04,西北有色金属研究院, 助理工程师

2017-03-01-今,甘肃省遗传学会, 第九届常务理事
2014-08-01-今,中国地理学会沙漠分会, 常务理事
2014-01-01-今,中国第四纪学会, 终身会员
2012-12-31-2018-12-30,中国遗传学会, 青年委员会委员

植物逆境生理学

   

（1） 中国科学院院长奖学金优秀奖, , 院级, 2006
（2） 中国科学院地奥奖学金, 一等奖, 院级, 2006
（3） 中国科学院研究生院优秀毕业生, , 院级, 2006

[1] 杨果, 马小飞, 梁艳萍, 钱朝菊, 周建伟, 伍修锟, 燕霞, 谢忠奎, 郭翊. 绵羊育肥全价颗粒饲料、制备方法和饲养绵羊的方法. CN: CN111642637A, 2020-09-11.

   

[1] BMC Plant Biology. 2023,   通讯作者  
[2] Li, LinFeng, Cushman, Samuel A, He, YanXia, Ma, XiaoFei, Ge, XueJun, Li, JiaXin, Qian, ZhiHao, Li, Yong. Landscape genomics reveals genetic evidence of local adaptation in a widespread tree, the Chinese wingnut (Pterocarya stenoptera). JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2022, 第 4 作者60(2): 386-397, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000603710400001.
[3] Yin, Xiaoyue, Qian, Chaoju, Yan, Xia, Fang, Tingzhou, Fan, Xingke, Zhou, Shanshan, Ma, XiaoFei. Will the artificial populations be sustainable? A genetic assessment on Caragana korshinskii afforestation in the semiarid regions of North China. EUROPEAN JOURNAL OF FOREST RESEARCH[J]. 2022, 第 7 作者  通讯作者  141(1): 105-116, http://dx.doi.org/10.1007/s10342-021-01425-5.
[4] Frontiers in Plant Science. 2022,   通讯作者  
[5] Qian, Chaoju, Yan, Xia, Fang, Tingzhou, Yin, Xiaoyue, Zhou, Shanshan, Fan, Xingke, Chang, Yuxiao, Ma, XiaoFei. Genomic Adaptive Evolution of Sand Rice (Agriophyllum squarrosum) and Its Implications for Desert Ecosystem Restoration. FRONTIERS IN GENETICS[J]. 2021, 第 8 作者  通讯作者  12: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8120313/.
[6] Zhou, Shanshan, Yang, Jian, Qian, Chaoju, Yin, Xiaoyue, Yan, Xia, Fan, Xingke, Fang, Tingzhou, Gao, Yuan, Chang, Yuxiao, Ma, XiaoFei. Organic acid metabolites involved in local adaptation to altitudinal gradient in Agriophyllum squarrosum, a desert medicinal plant. JOURNAL OF PLANT RESEARCH[J]. 2021, 第 10 作者  通讯作者  134(5): 999-1011, http://dx.doi.org/10.1007/s10265-021-01325-0.
[7] Zhou, Shanshan, Yan, Xia, Yang, Jian, Qian, Chaoju, Yin, Xiaoyue, Fan, Xingke, Fang, Tingzhou, Gao, Yuan, Chang, Yuxiao, Liu, Weimin, Ma, XiaoFei. Variations in Flavonoid Metabolites Along Altitudinal Gradient in a Desert Medicinal Plant Agriophyllum squarrosum. FRONTIERS IN PLANT SCIENCE[J]. 2021, 第 11 作者  通讯作者  12: http://dx.doi.org/10.3389/fpls.2021.683265.
[8] 范兴科, 燕霞, 冯媛媛, 冉进华, 钱朝菊, 尹晓月, 周姗姗, 房庭舟, 马小飞. 红砂基因组大小变异及物种分化. 生物多样性[J]. 2021, 第 9 作者29(10): 1308-1320, https://www.biodiversity-science.net/CN/10.17520/biods.2021057.
[9] Dong, Xicun, Chang, Yan, Zheng, Rong, Wang, Xueqiang, Yan, Xia, Ma, XiaoFei. Phytoremediation of Cadmium Contaminated Soil: Impacts on Morphological Traits, Proline Content and Stomata Parameters of Sweet Sorghum Seedlings. BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY[J]. 2021, 第 6 作者  通讯作者  106(3): 528-535, http://dx.doi.org/10.1007/s00128-021-03125-7.
[10] Yin, Xiaoyue, Yan, Xia, Qian, Chaoju, Zhou, Shanshan, Fang, Tingzhou, Fan, Xingke, Gao, Yuan, Chang, Yuxiao, Yang, Jian, Ma, XiaoFei. Comparative transcriptome analysis to identify genes involved in terpenoid biosynthesis in Agriophyllum squarrosum, a folk medicinal herb native to Asian temperature deserts. PLANT BIOTECHNOLOGY REPORTS[J]. 2021, 第 10 作者  通讯作者  15(3): 369-387, http://dx.doi.org/10.1007/s11816-021-00674-5.
[11] Fan, Xingke, Yan, Xia, Qian, Chaoju, Bachir, Daoura Goudia, Yin, Xiaoyue, Sun, Peipei, Ma, XiaoFei. Leaf size variations in a dominant desert shrub,Reaumuria soongarica, adapted to heterogeneous environments. ECOLOGY AND EVOLUTION[J]. 2020, 第 7 作者  通讯作者  10(18): 10076-10094, https://doaj.org/article/db0cc5b82f6943f5b44d5e181734a731.
[12] Qian, Chaoju, Yan, Xia, Shi, Yong, Yin, Hengxia, Chang, Yuxiao, Chen, Jun, Ingvarsson, Par K, Nevo, Eviatar, Ma, XiaoFei. Adaptive signals of flowering time pathways in wild barley from Israel over 28 generations. HEREDITY[J]. 2020, 第 9 作者  通讯作者  124(1): 62-76, http://dx.doi.org/10.1038/s41437-019-0264-5.
[13] Journal of Systematics and Evolution. 2020,   通讯作者  
[14] 孙沛沛, 钱朝菊, 尹晓月, 范兴科, 王进, 燕霞, 李小军, 马小飞, 王涛. 半干旱沙地蒿类植被建成过程中土壤理化性质变化规律. 土壤科学[J]. 2019, 第 8 作者7(3): 210-219, http://lib.cqvip.com/Qikan/Article/Detail?id=HS724282019003006.
[15] Qian, Chaoju, Yan, Xia, Yin, Hengxia, Fan, Xingke, Yin, Xiaoyue, Sun, Peipei, Lis, Zhijun, Nevo, Eviatar, Ma, XiaoFei. Transcriptomes Divergence of Ricotia lunaria Between the Two Micro-Climatic Divergent Slopes a "Evolution Canyon" I, Israel. FRONTIERS IN GENETICS[J]. 2018, 第 9 作者  通讯作者  9: http://dx.doi.org/10.3389/fgene.2018.00506.
[16] Qian, Chaoju, Shi, Yong, Liu, Yuan, Yan, Xia, Ma, XiaoFei. Phylogenetics and dispersal patterns of Brassicaceae around the Qinghai-Tibet Plateau. JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2018, 第 5 作者  通讯作者  56(3): 202-217, http://dx.doi.org/10.1111/jse.12312.
[17] 尹晓月, 王维东, 钱朝菊, 范兴科, 燕霞, 燕高红, 马小飞. 基于UPLC-MS的沙米代谢组学分析. 中国实验方剂学杂志[J]. 2018, 第 7 作者24(15): 51-56, http://lib.cqvip.com/Qikan/Article/Detail?id=675636604.
[18] ChaoJuQian, MengHeGu, HengXiaYin, YongShi, ChengLiangYin, XiaYan, XiaoFeiMa. Adaptive evolution of rbcL in Reaumuria soongarica (Tamaricaceae). SCIENCES IN COLD AND ARID REGIONS[J]. 2017, 第 7 作者9(1): 78-88, http://lib.cqvip.com/Qikan/Article/Detail?id=671122777.
[19] Zhao Pengshan, Wang Lirong, Zhao Xin, Chen Guoxiong, Ma XiaoFei. A comparative transcriptomic analysis reveals the core genetic components of salt and osmotic stress responses in Braya humilis. PLOS ONE[J]. 2017, 第 5 作者  通讯作者  12(8): http://dx.doi.org/10.1371/journal.pone.0183778.
[20] Zhao Pengshan, Zhang Jiwei, Qian Chaoju, Zhou Qin, Zhao Xin, Chen Guoxiong, Ma XiaoFei. SNP Discovery and Genetic Variation of Candidate Genes Relevant to Heat Tolerance and Agronomic Traits in Natural Populations of Sand Rice (Agriophyllum squarrosum). FRONTIERS IN PLANT SCIENCE[J]. 2017, 第 7 作者8: https://www.webofscience.com/wos/woscc/full-record/WOS:000398627700001.
[21] Qian Chaoju, Gu Menghe, Yin Hengxia, Shi Yong, Yin Chengliang, Yan Xia, Ma Xiaofei. Adaptive evolution of rbcL in Reaumuria soon garica(Tamaricaceae). 寒旱区科学：英文版[J]. 2017, 第 7 作者9(1): 78-88, http://lib.cqvip.com/Qikan/Article/Detail?id=671122777.
[22] 尹成亮. 环境异质性对潜在粮食作物沙米表型变异的影响. 中国科学. 生命科学[J]. 2016, 46(11): 1324-1335, 
[23] Chen, Jun, Kallman, Thomas, Ma, XiaoFei, Zaina, Giusi, Morgante, Michele, Lascoux, Martin. Identifying Genetic Signatures of Natural Selection Using Pooled Population Sequencing in Picea abies. G3-GENES GENOMES GENETICS[J]. 2016, 第 3 作者6(7): 1979-1989, https://doaj.org/article/c13045d053954f27ad29eceb933e0758.
[24] Qian, Chaoju, Yin, Hengxia, Shi, Yong, Zhao, Jiecai, Yin, Chengliang, Luo, Wanyin, Dong, Zhibao, Chen, Guoxiong, Yan, Xia, Wang, XiaoRu, Ma, XiaoFei. Population dynamics of Agriophyllum squarrosum, a pioneer annual plant endemic to mobile sand dunes, in response to global climate change. SCIENTIFIC REPORTS[J]. 2016, 第 11 作者  通讯作者  6: http://dx.doi.org/10.1038/srep26613.
[25] Yin, Hengxia, Yan, Xia, Zhang, Wen, Shi, Yong, Qian, Chaoju, Yin, Chengliang, Tian, Fang, Wang, Xiaoquan, Ma, XiaoFei. Geographical or ecological divergence between the parapatric species Ephedra sinica and E-intermedia?. PLANT SYSTEMATICS AND EVOLUTION[J]. 2016, 第 9 作者  通讯作者  302(8): 1157-1170, http://dx.doi.org/10.1007/s00606-016-1323-5.
[26] Yan, Xia, Zhou, Maoxian, Dong, Xicun, Zou, Songbing, Xiao, Honglang, Ma, XiaoFei. Molecular mechanisms of foliar water uptake in a desert tree. AOB PLANTS[J]. 2015, 第 6 作者  通讯作者  7: 
[27] Yin, Hengxia, Yan, Xia, Shi, Yong, Qian, Chaoju, Li, Zhonghu, Zhang, Wen, Wang, Lirong, Li, Yi, Li, Xiaoze, Chen, Guoxiong, Li, Xinrong, Nevo, Eviatar, Ma, XiaoFei. The role of East Asian monsoon system in shaping population divergence and dynamics of a constructive desert shrub Reaumuria soongarica. SCIENTIFIC REPORTS[J]. 2015, 第 13 作者  通讯作者  5: https://www.webofscience.com/wos/woscc/full-record/WOS:000363621500002.
[28] Lind, Marten, Kallman, Thomas, Chen, Jun, Ma, XiaoFei, Bousquet, Jean, Morgante, Michele, Zaina, Giusi, Karlsson, Bo, Elfstrand, Malin, Lascoux, Martin, Stenlid, Jan. A Picea abies Linkage Map Based on SNP Markers Identifies QTLs for Four Aspects of Resistance to Heterobasidion parviporum Infection. PLOS ONE[J]. 2014, 第 4 作者9(7): https://doaj.org/article/90ff49ac98ff4cf6970e60212e692ba6.
[29] Yan, Xia, Dong, Xicun, Zhang, Wen, Yin, Hengxia, Xiao, Honglang, Chen, Peng, Ma, XiaoFei. Reference Gene Selection for Quantitative Real-Time PCR Normalization in Reaumuria soongorica. PLOS ONE[J]. 2014, 第 7 作者  通讯作者  9(8): https://doaj.org/article/9724f951368340cebf84a61e98216b8e.
[30] Liu, Yubing, Liu, Meiling, Li, Xinrong, Cao, Bo, Ma, Xiaofei. Identification of Differentially Expressed Genes in Leaf of Reaumuria soongorica under PEG-Induced Drought Stress by Digital Gene Expression Profiling. PLOS ONE[J]. 2014, 第 5 作者9(4): https://doaj.org/article/ebb77bd9ab90400baec5621a6d89058c.
[31] Zhao, Pengshan, CapellaGutierrez, Salvador, Shi, Yong, Zhao, Xin, Chen, Guoxiong, Gabaldon, Toni, Ma, XiaoFei. Transcriptomic analysis of a psammophyte food crop, sand rice (Agriophyllum squarrosum) and identification of candidate genes essential for sand dune adaptation. BMC GENOMICS[J]. 2014, 第 7 作者15(1): http://dx.doi.org/10.1186/1471-2164-15-872.
[32] 马小飞. Transcriptome Analysis of a Tertiary Relict Plant, Extreme Xerophyte Reaumuria soongorica to Understand Drought Adaptation. PLoS One. 2013, 第 1 作者  通讯作者  
[33] 马小飞. Response of a desert shrub to past geological and climatic change: a phylogeographic study of Reaumuria soongorica (Tamaricaceae) in western China. Journal of Systematics and Evolution. 2012, 第 1 作者  通讯作者  
[34] Chen, Jun, Kallman, Thomas, Ma, Xiaofei, Gyllenstrand, Niclas, Zaina, Giusi, Morgante, Michele, Bousquet, Jean, Eckert, Andrew, Wegrzyn, Jill, Neale, David, Lagercrantz, Ulf, Lascoux, Martin. Disentangling the Roles of History and Local Selection in Shaping Clinal Variation of Allele Frequencies and Gene Expression in Norway Spruce (Picea abies). GENETICS[J]. 2012, 第 3 作者191(3): 865-U377, http://dx.doi.org/10.1534/genetics.112.140749.
[35] Hall, David, Ma, XiaoFei, Ingvarsson, Par K. Adaptive evolution of the Populus tremula photoperiod pathway. MOLECULAR ECOLOGY[J]. 2011, 第 2 作者20(7): 1463-1474, https://www.doi.org/10.1111/j.1365-294X.2011.05014.x.
[36] Ma, XiaoFei, Hall, David, St Onge, Katherine R, Jansson, Stefan, Ingvarsson, Par K. Genetic Differentiation, Clinal Variation and Phenotypic Associations With Growth Cessation Across the Populus tremula Photoperiodic Pathway. GENETICS[J]. 2010, 第 1 作者186(3): 1033-1044, http://dx.doi.org/10.1534/genetics.110.120873.
[37] Ma, XF, Szmidt, AE, Wang, XR. Genetic structure and evolutionary history of a diploid hybrid pine Pinus densata inferred from the nucleotide variation at seven gene loci. MOLECULAR BIOLOGY AND EVOLUTION[J]. 2006, 23(4): 807-816, http://ir.ibcas.ac.cn/handle/151111/5815.
[38] Liu, ZL, Zhang, DM, Wang, XQ, Ma, XF, Wang, XR. Intragenomic and interspecific 5S rDNA sequence variation in five Asian pines. AMERICAN JOURNAL OF BOTANY[J]. 2003, 90(1): 17-24, https://www.webofscience.com/wos/woscc/full-record/WOS:000183132800003.

   

（ 1 ） 西部荒漠建群种的进化历史与适应性机理, 主持, 部委级, 2011-07--2015-12
（ 2 ） 荒漠植物红砂生态适应性进化的群体遗传学研究, 主持, 国家级, 2014-01--2017-12
（ 3 ） 植物固沙的生态水文过程、机理与调控, 主持, 国家级, 2013-01--2017-12
（ 4 ） 沙化土地稳定恢复生态机理及关键生物技术, 主持, 国家级, 2016-07--2020-12
（ 5 ） 温带荒漠建群灌木红砂的生态物种形成研究, 主持, 国家级, 2018-01--2021-12

主持国家重点研发计划课题“沙化土地稳定恢复生态机理及关键生物技术”2016-07--2020-12，合作单位北京大学

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​北京大学；

北京林业大学；

中科院上海辰山植物园；

兰州大学；

西北大学；

南通大学；

已指导学生

石勇  博士研究生  071012-生态学  

殷恒霞  博士研究生  071012-生态学  

赵霞  博士研究生  071012-生态学  

钱朝菊  博士研究生  071300-生态学  

尹成亮  硕士研究生  085238-生物工程  

现指导学生

尹晓月  博士研究生  071300-生态学  

范兴科  博士研究生  071300-生态学  

孙沛沛  硕士研究生  085238-生物工程  

周姗姗  博士研究生  071300-生态学  

房庭舟  博士研究生  071300-生态学