基本信息

马朋飞 男 博导 中国科学院昆明植物研究所
电子邮件: mapengfei@mail.kib.ac.cn
通信地址: 云南省昆明市盘龙区蓝黑路132号
邮政编码:
研究领域
禾本科进化基因组学;竹类植物的系统发育与进化
招生信息
招生专业
071001-植物学071010-生物化学与分子生物学071007-遗传学
招生方向
植物系统发育与进化进化基因组学基因功能与性状演化
教育背景
2007-09--2012-08 中国科学院研究生院 理学博士学位
工作经历
工作简历
2022-02~现在, 中国科学院昆明植物研究所, 研究员2016-01~2022-01,中国科学院昆明植物研究所, 副研究员2012-09~2015-12,中国科学院昆明植物研究所, 助理研究员
出版信息
发表论文
[1] ShiYu Lv, XiaYing Ye, ZhongHu Li, PengFei Ma, DeZhu Li. Testing complete plastomes and nuclear ribosomal DNA sequences for species identification in a taxonomically difficult bamboo genus Fargesia. PLANT DIVERSITY[J]. 2023, [2] Wu, Hong, Yang, JunBo, Liu, JingXia, Li, DeZhu, Ma, PengFei. Organelle Phylogenomics and Extensive Conflicting Phylogenetic Signals in the Monocot Order Poales. FRONTIERS IN PLANT SCIENCE[J]. 2022, 12: https://doaj.org/article/27725926c09243ccb7d6507aa724847c.[3] Jin, Guihua, Ma, PengFei, Wu, Xiaopei, Gu, Lianfeng, Long, Manyuan, Zhang, Chengjun, Li, DeZhu. New Genes Interacted With Recent Whole-Genome Duplicates in the Fast Stem Growth of Bamboos. MOLECULAR BIOLOGY AND EVOLUTION[J]. 2021, 38(12): 5752-5768, http://dx.doi.org/10.1093/molbev/msab288.[4] PengFei Ma, YunLong Liu, GuiHua Jin, JingXia Liu, Hong Wu, Jun He, ZhenHua Guo, DeZhu Li. The Pharus latifolius genome bridges the gap of early grass evolution. THE PLANT CELL[J]. 2021, 33(4): 846-864, [5] Wu, Hong, Ma, PengFei, Li, HongTao, Hu, GuoXiong, Li, DeZhu. Comparative plastomic analysis and insights into the phylogeny of Salvia (Lamiaceae). PLANT DIVERSITY[J]. 2021, 43(1): 15-26, http://dx.doi.org/10.1016/j.pld.2020.07.004.[6] Ye, XiaYing, Ma, PengFei, Guo, Cen, Li, DeZhu. Phylogenomics of Fargesia and Yushania reveals a history of reticulate evolution. JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2021, 59(6): 1183-1197, http://dx.doi.org/10.1111/jse.12719.[7] Liu, JingXia, Zhou, MengYuan, Yang, GuoQian, Zhang, YuXiao, Ma, PengFei, Guo, Cen, Vorontsova, Maria S, Li, DeZhu. ddRAD analyses reveal a credible phylogenetic relationship of the four main genera of Bambusa-Dendrocalamus-Gigantochloa complex (Poaceae: Bambusoideae). MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2020, 146: http://dx.doi.org/10.1016/j.ympev.2020.106758.[8] Ye, XiaYing, Ma, PengFei, Yang, GuoQian, Guo, Cen, Zhang, YuXiao, Chen, YunMei, Guo, ZhenHua, Li, DeZhu. Rapid diversification of alpine bamboos associated with the uplift of the Hengduan Mountains. JOURNAL OF BIOGEOGRAPHY[J]. 2019, 46(12): 2678-2689, http://dx.doi.org/10.1111/jbi.13723.[9] Mower, Jeffrey P, Ma, PengFei, Grewe, Felix, Taylor, Alex, Michael, Todd P, VanBuren, Robert, Qiu, YinLong. Lycophyte plastid genomics: extreme variation in GC, gene and intron content and multiple inversions between a direct and inverted orientation of the rRNA repeat. NEW PHYTOLOGIST[J]. 2019, 222(2): 1061-1075, http://ir.kib.ac.cn/handle/151853/66781.[10] Guo, ZhenHua, Ma, PengFei, Yang, GuoQian, Hu, JinYong, Liu, YunLong, Xia, EnHua, Zhong, MiCai, Zhao, Lei, Sun, GuiLing, Xu, YuXing, Zhao, YouJie, Zhang, YiChi, Zhang, YuXiao, Zhang, XueMei, Zhou, MengYuan, Guo, Ying, Guo, Cen, Liu, JingXia, Ye, XiaYing, Chen, YunMei, Yang, Yang, Hang, Bin, Lin, ChounSea, Lu, Ying, Li, DeZhu. Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos. MOLECULAR PLANT[J]. 2019, 12(10): 1353-1365, http://lib.cqvip.com/Qikan/Article/Detail?id=7100466465.[11] Zhang, LiNa, Ma, PengFei, Zhang, YuXiao, Zeng, ChunXia, Zhao, Lei, Li, DeZhu. Using nuclear loci and allelic variation to disentangle the phylogeny of Phyllostachys (Poaceae, Bambusoideae). MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2019, 137: 222-235, http://dx.doi.org/10.1016/j.ympev.2019.05.011.[12] Li, HongTao, Yi, TingShuang, Gao, LianMing, Ma, PengFei, Zhang, Ting, Yang, JunBo, Gitzendanner, Matthew A, Fritsch, Peter W, Cai, Jie, Luo, Yang, Wang, Hong, van der Bank, Michelle, Zhang, ShuDong, Wang, QingFeng, Wang, Jian, Zhang, ZhiRong, Fu, ChaoNan, Yang, Jing, Hollingsworth, Peter M, Chase, Mark W, Soltis, Douglas E, Soltis, Pamela S, Li, DeZhu. Origin of angiosperms and the puzzle of the Jurassic gap. NATURE PLANTS[J]. 2019, 5(5): 461-470, http://dx.doi.org/10.1038/s41477-019-0421-0.[13] Ma, Liuqing, Ma, Pengfei, Li, Dezhu. The first complete plastid genome of Burmannia disticha L. from the mycoheterotrophic monocot family Burmanniaceae. PLANT DIVERSITY[J]. 2018, 40(5): 232-237, https://doaj.org/article/0fbdacd827f5454dbe3593f75def707b.[14] Ma, PengFei, Vorontsova, Maria S, Nanjarisoa, Olinirina Prisca, Razanatsoa, Jacqueline, Guo, ZhenHua, Haevermans, Thomas, Li, DeZhu. Negative correlation between rates of molecular evolution and flowering cycles in temperate woody bamboos revealed by plastid phylogenomics. BMC PLANT BIOLOGY[J]. 2017, 17(1): http://dx.doi.org/10.1186/s12870-017-1199-8.[15] Fu, ChaoNan, Li, HongTao, Milne, Richard, Zhang, Ting, Ma, PengFei, Yang, Jing, Li, DeZhu, Gao, LianMing. Comparative analyses of plastid genomes from fourteen Cornales species: inferences for phylogenetic relationships and genome evolution. BMC GENOMICS[J]. 2017, 18(1): http://dx.doi.org/10.1186/s12864-017-4319-9.[16] Zhang, MingYing, Fritsch, Peter W, Ma, PengFei, Wang, Hong, Lu, Lu, Li, De Zhu. Plastid phylogenomics and adaptive evolution of Gaultheria series Trichophyllae (Ericaceae), a Glade from sky islands of the Himalaya-Hengduan Mountains. MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2017, 110: 7-18, http://www.irgrid.ac.cn/handle/1471x/1185361.[17] Luo, Yang, Ma, PengFei, Li, HongTao, Yang, JunBo, Wang, Hong, Li, DeZhu. Plastid Phylogenomic Analyses Resolve Tofieldiaceae as the Root of the Early Diverging Monocot Order Alismatales. GENOME BIOLOGY AND EVOLUTION[J]. 2016, 8(3): 932-945, http://dx.doi.org/10.1093/gbe/evv260.[18] Zhang, XianZhi, Zeng, ChunXia, Ma, PengFei, Haevermans, Thomas, Zhang, YuXiao, Zhang, LiNa, Guo, ZhenHua, Li, DeZhu. Multi-locus plastid phylogenetic biogeography supports the Asian hypothesis of the temperate woody bamboos (Poaceae: Bambusoideae). MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2016, 96(1): 118-129, http://dx.doi.org/10.1016/j.ympev.2015.11.025.[19] Ma, PengFei, Zhang, YuXiao, Guo, ZhenHua, Li, DeZhu. Evidence for horizontal transfer of mitochondrial DNA to the plastid genome in a bamboo genus. SCIENTIFIC REPORTS[J]. 2015, 5: http://dx.doi.org/10.1038/srep11608.[20] Cai, Jie, Ma, PengFei, Li, HongTao, Li, DeZhu. Complete Plastid Genome Sequencing of Four Tilia Species (Malvaceae): A Comparative Analysis and Phylogenetic Implications. PLOS ONE[J]. 2015, 10(11): https://doaj.org/article/825e1c4c0bb140418205843245d68762.[21] Zhao, XuYao, Wang, XiaoYan, Zhao, Lei, Zhang, XueMei, Chen, SiYun, Ma, PengFei, Hu, XiangYang, Li, DeZhu, Guo, ZhenHua. Investigating the MicroRNAomes of Two Developmental Phases of Dendrocalamus latiflorus (Poaceae: Bambusoideae) Inflorescences. PLANT MOLECULAR BIOLOGY REPORTER[J]. 2015, 33(4): 1141-1155, http://dx.doi.org/10.1007/s11105-014-0808-z.[22] 赵旭耀, 陈斯云, 赵磊, 张雪梅, 马朋飞, 郭振华. MIR166基因家族在陆生植物中的进化模式分析. 植物分类与资源学报[J]. 2014, 36(3): 331-341, http://www.irgrid.ac.cn/handle/1471x/929764.[23] Zhang, LiNa, Zhang, XianZhi, Zhang, YuXiao, Zeng, ChunXia, Ma, PengFei, Zhao, Lei, Guo, ZhenHua, Li, DeZhu. Identification of putative orthologous genes for the phylogenetic reconstruction of temperate woody bamboos (Poaceae: Bambusoideae). MOLECULAR ECOLOGY RESOURCES[J]. 2014, 14(5): 988-999, http://dx.doi.org/10.1111/1755-0998.12248.[24] 郭振华, 马朋飞, 张雪梅, 赵磊, 陈斯云, 赵旭耀. MIR166基因家族在陆生植物中的进化模式分析(英文). 植物分类与资源学报[J]. 2014, 36(3): 331-341, http://ir.kib.ac.cn/handle/151853/66100.[25] Li, Rong, Ma, PengFei, Wen, Jun, Yi, TingShuang. Complete Sequencing of Five Araliaceae Chloroplast Genomes and the Phylogenetic Implications. PLOS ONE[J]. 2013, 8(10): https://doaj.org/article/1507961ab34e45438b63b99c25408475.[26] Zhao, Lei, Zhang, Ning, Ma, PengFei, Liu, Qi, Li, DeZhu, Guo, ZhenHua. Phylogenomic Analyses of Nuclear Genes Reveal the Evolutionary Relationships within the BEP Clade and the Evidence of Positive Selection in Poaceae. PLOS ONE[J]. 2013, 8(5): https://doaj.org/article/1690cd987689490dab00ba5ca86e693c.[27] 张玉霄, 许宇星, 马朋飞, 张丽娜, 李德铢. 竹亚科叶绿体DNA条形码筛选. 植物分类与资源学报[J]. 2013, 35(6): 743-750, http://www.irgrid.ac.cn/handle/1471x/832340.
科研活动
科研项目
( 1 ) 全基因组加倍与植物的辐射演化, 负责人, 中国科学院计划, 2018-07--2023-06( 2 ) 禾本科植物物种形成与分化研究, 负责人, 地方任务, 2022-01--2024-12( 3 ) 基于全基因组重测序解析中国西南喀斯特地区单枝竹属的物种形成与适应性进化, 负责人, 国家任务, 2020-01--2023-12
指导学生
现指导学生
陈凯 硕士研究生 071010-生物化学与分子生物学
吴序昆 硕士研究生 071001-植物学