基本信息
刘阳  男  硕导  其他
电子邮件: liuyang@ibcas.ac.cn
通信地址: 深圳市国家基因库
邮政编码:

招生信息

   
招生专业
0710Z1-基因组学
0710J3-生物信息学
071001-植物学
招生方向
早期陆地植物基因组学
早期陆地植物系统发育基因组学

教育背景

2001-09--2007-07   中科院植物研究所   博士/植物学
1997-09--2001-07   中国农业大学   学士/园艺学

工作经历

   
工作简历
2018-06~现在, 深圳华大生命科学研究院, 研究员
2016-06~现在, 深圳仙湖植物园管理处(兼), 研究员
2015-01~2016-12,康涅狄格大学, 助理研究教授
2009-09~2014-12,康涅狄格大学, 博士后
2008-03~2008-09,密歇根大学, 博士后
社会兼职
2020-01-01-今,Mitochondrial DNA Part B, 副主编
2020-01-01-今,Frontiers in Ecology and Evolution, 编辑

教授课程

现代分子育种

专利与奖励

   
奖励信息
(1) ABLS Sullivant Award, 其他, 2019
(2) 深圳市盐田区“梧桐人才”, 市地级, 2018
(3) 深圳市海外高层次人才, 市地级, 2017

出版信息

   
发表论文
[1] Liu, Yang, Wang, Sibo, Li, Linzhou, Yang, Ting, Dong, Shanshan, Wei, Tong, Wu, Shengdan, Liu, Yongbo, Gong, Yiqing, Feng, Xiuyan, Ma, Jianchao, Chang, Guanxiao, Huang, Jinling, Yang, Yong, Wang, Hongli, Liu, Min, Xu, Yan, Liang, Hongping, Yu, Jin, Cai, Yuqing, Zhang, Zhaowu, Fan, Yannan, Mu, Weixue, Sahu, Sunil Kumar, Liu, Shuchun, Lang, Xiaoan, Yang, Leilei, Li, Na, Habib, Sadaf, Yang, Yongqiong, Lindstrom, Anders J, Liang, Pei, Goffinet, Bernard, Zaman, Sumaira, Wegrzyn, Jill L, Li, Dexiang, Liu, Jian, Cui, Jie, Sonnenschein, Eva C, Wang, Xiaobo, Ruan, Jue, Xue, JiaYu, Shao, ZhuQing, Song, Chi, Fan, Guangyi, Li, Zhen, Zhang, Liangsheng, Liu, Jianquan, Liu, ZhongJian, Jiao, Yuannian, Wang, XiaoQuan, Wu, Hong, Wang, Ertao, Lisby, Michael, Yang, Huanming, Wang, Jian, Liu, Xin, Xu, Xun, Li, Nan, Soltis, Pamela S, Van de Peer, Yves, Soltis, Douglas E, Gong, Xun, Liu, Huan, Zhang, Shouzhou. The Cycas genome and the early evolution of seed plants. NATURE PLANTS[J]. 2022, 8(4): 389-+, http://dx.doi.org/10.1038/s41477-022-01129-7.
[2] 王伟, 刘阳. 植物生命之树重建的现状、问题和对策建议. 生物多样性[J]. 2020, 28(2): 176-188, http://lib.cqvip.com/Qikan/Article/Detail?id=7101602405.
[3] Zhang, Liangsheng, Chen, Fei, Zhang, Xingtan, Li, Zhen, Zhao, Yiyong, Lohaus, Rolf, Chang, Xiaojun, Dong, Wei, Ho, Simon Y W, Liu, Xing, Song, Aixia, Chen, Junhao, Guo, Wenlei, Wang, Zhengjia, Zhuang, Yingyu, Wang, Haifeng, Chen, Xuequn, Hu, Juan, Liu, Yanhui, Qin, Yuan, Wang, Kai, Dong, Shanshan, Liu, Yang, Zhang, Shouzhou, Yu, Xianxian, Wu, Qian, Wang, Liangsheng, Yan, Xueqing, Jiao, Yuannian, Kong, Hongzhi, Zhou, Xiaofan, Yu, Cuiwei, Chen, Yuchu, Li, Fan, Wang, Jihua, Chen, Wei, Chen, Xinlu, Jia, Qidong, Zhang, Chi, Jiang, Yifan, Zhang, Wanbo, Liu, Guanhua, Fu, Jianyu, Chen, Feng, Ma, Hong, Van de Peer, Yves, Tang, Haibao. The water lily genome and the early evolution of flowering plants. NATURE[J]. 2020, 577(7788): 79-+, http://dx.doi.org/10.1038/s41586-019-1852-5.
[4] Sheng, Wei, Yue, XinRui, Li, Na, Liu, Yang, Wu, YuHuan. Comparison of eight complete plastid genomes from three moss families Amblystegiaceae, Calliergonaceae and Pylaisiaceae. MITOCHONDRIAL DNA PART B-RESOURCES[J]. 2020, 5(3): 3109-3111, http://dx.doi.org/10.1080/23802359.2020.1797548.
[5] Sun, Guiling, Bai, Shenglong, Guan, Yanlong, Wang, Shuanghua, Wang, Qia, Liu, Yang, Liu, Huan, Goffinet, Bernard, Zhou, Yun, Paoletti, Mathieu, Hu, Xiangyang, Haas, Fabian B, FernandezPozo, Noe, Czyrt, Alia, Sun, Hang, Rensing, Stefan A, Huang, Jinling. Are fungi-derived genomic regions related to antagonism towards fungi in mosses?. The New Phytologist[J]. 2020, 228(4): 1169-1175, https://www.webofscience.com/wos/woscc/full-record/WOS:000553823500001.
[6] Chen, Xiaoli, Fang, Dongming, Wu, Chenyu, Liu, Bing, Liu, Yang, Sahu, Sunil Kumar, Song, Bo, Yang, Shuai, Yang, Tuo, Wei, Jinpu, Wang, Xuebing, Zhang, Wen, Xu, Qiwu, Wang, Huafeng, Yuan, Langxing, Liao, Xuezhu, Chen, Lipeng, Chen, Ziqiang, Yuan, Fu, Chang, Yue, Lu, Lihua, Yang, Huanming, Wang, Jian, Xu, Xun, Liu, Xin, Wicke, Susann, Liu, Huan. Comparative Plastome Analysis of Root- and Stem-Feeding Parasites of Santalales Untangle the Footprints of Feeding Mode and Lifestyle Transitions. GENOME BIOLOGY AND EVOLUTION[J]. 2020, 12(1): 3663-3676, https://www.webofscience.com/wos/woscc/full-record/WOS:000522860800011.
[7] Zhang, Jian, Fu, XinXing, Li, RuiQi, Zhao, Xiang, Liu, Yang, Li, MingHe, Zwaenepoel, Arthur, Ma, Hong, Goffinet, Bernard, Guan, YanLong, Xue, JiaYu, Liao, YiYing, Wang, QingFeng, Wang, QingHua, Wang, JieYu, Zhang, Guo Qiang, Wang, ZhiWen, Jia, Yu, Wang, MeiZhi, Dong, ShanShan, Yang, JianFen, Jiao, YuanNian, Guo, YaLong, Kong, HongZhi, Lu, AnMing, Yang, HuanMing, Zhang, ShouZhou, Van de Peer, Yves, Liu, ZhongJian, Chen, ZhiDuan. The hornwort genome and early land plant evolution. NATURE PLANTS[J]. 2020, 6(2): 107-118, https://www.webofscience.com/wos/woscc/full-record/WOS:000512529000001.
[8] Shanshan Dong, Lu Chen, Yang Liu, Yaling Wang, Suzhou Zhang, Leilei Yang, Xiaoan Lang, Shouzhou Zhang. The draft mitochondrial genome of Magnolia biondii and mitochondrial phylogenomics of angiosperms. PLOS ONE[J]. 2020, 15(4): https://doaj.org/article/e1f4b42128b24598838e2e9a8615c7d3.
[9] Xue, JiaYu, Wang, Yue, Chen, Min, Dong, Shanshan, Shao, ZhuQing, Liu, Yang. Maternal Inheritance of U's Triangle and Evolutionary Process of Brassica Mitochondrial Genomes. FRONTIERS IN PLANT SCIENCE[J]. 2020, 11: https://doaj.org/article/e629eef72962433aae80648c5fdc1508.
[10] 陈红锋. Genome-Wide Analysis of NBS-LRR Genes of Four Orchids Revealed Extremely Low Numbers of Disease Resistance Genes. Frontiers in Genetics. 2020, [11] Jin Yu, Linzhou Li, Sibo Wang, Shanshan Dong, Ziqiang Chen, Nikisha Patel, Bernard Goffinet, Hongfeng Chen, Huan Liu, Yang Liu. Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta). GIGABYTE (2020)[J]. 2020, https://doaj.org/article/004d8ca25d394c8688832e7e7d82c410.
[12] Shanshan Dong, Chaoxian Zhao, Shouzhou Zhang, Li Zhang, Hong Wu, Huan Liu, Ruiliang Zhu, Yu Jia, Bernard Goffinet, Yang Liu. Mitochondrial genomes of the early land plant lineage liverworts (Marchantiophyta): conserved genome structure, and ongoing low frequency recombination. BMC GENOMICS[J]. 2019, 20(1): 1-14, http://dx.doi.org/10.1186/s12864-019-6365-y.
[13] Liu, Yang, Johnson, Matthew G, Cox, Cymon J, Medina, Rafael, Devos, Nicolas, Vanderpoorten, Alain, Hedenas, Lars, Bell, Neil E, Shevock, James R, Aguero, Blanka, Quandt, Dietmar, Wickett, Norman J, Shaw, A Jonathan, Goffinet, Bernard. Resolution of the ordinal phylogeny of mosses using targeted exons from organellar and nuclear genomes. NATURE COMMUNICATIONS[J]. 2019, 10(1): https://doaj.org/article/b9ba2c9fad984c4b8d7ac37c3b37c951.
[14] Medina, Rafael, Johnson, Matthew G, Liu, Yang, Wickett, Norman J, Shaw, A Jonathan, Goffinet, Bernard. Phylogenomic delineation of Physcomitrium (Bryophyta: Funariaceae) based on targeted sequencing of nuclear exons and their flanking regions rejects the retention of Physcomitrella, Physcomitridium and Aphanorrhegma. JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2019, 57(4): 404-417, http://lib.cqvip.com/Qikan/Article/Detail?id=7002814530.
[15] Dong, Shanshan, Zhao, Chaoxian, Zhang, Shouzhou, Wu, Hong, Mu, Weixue, Wei, Tong, Li, Na, Wan, Tao, Liu, Huan, Cui, Jie, Zhu, Ruiliang, Goffinet, Bernard, Liu, Yang. The Amount of RNA Editing Sites in Liverwort Organellar Genes Is Correlatedwith GC Content and Nuclear PPR Protein Diversity. GENOME BIOLOGY AND EVOLUTION[J]. 2019, 11(11): 3233-3239, https://www.webofscience.com/wos/woscc/full-record/WOS:000504929400016.
[16] Liu Yang. The mitochondrial genomes of Bazzania tridens and Riccardia planiflora further confirm conservative evolution of mitogenomes in liverworts. The Bryologist. 2019, [17] Shi, Yancai, Liu, Yang, Zhang, Shouzhou, Zou, Rong, Tang, Jianmin, Mu, Weixue, Peng, Yang, Dong, Shanshan. Assembly and comparative analysis of the complete mitochondrial genome sequence of Sophora japonica 'JinhuaiJ2'. PLOS ONE[J]. 2018, 13(8): https://doaj.org/article/36c5078f8e2c4788906b8eccb441eb58.
[18] Liu Yang. Complete mitochondrial genome sequence of Anthoceros angustus: conservative evolution of the mitogenome in hornworts. The Bryologist. 2018, [19] Wan, Tao, Liu, ZhiMing, Li, LingFei, Leitch, Andrew R, Leitch, Ilia J, Lohaus, Rolf, Liu, ZhongJian, Xin, HaiPing, Gong, YanBing, Liu, Yang, Wang, WenCai, Chen, LingYun, Yang, Yong, Kelly, Laura J, Yang, Ji, Huang, JinLing, Li, Zhen, Liu, Ping, Zhang, Li, Liu, HongMei, Wang, Hui, Deng, ShuHan, Liu, Meng, Li, Ji, Ma, Lu, Liu, Yan, Lei, Yang, Xu, Wei, Wu, LingQing, Liu, Fan, Ma, Qian, Yu, XinRan, Jiang, Zhi, Zhang, GuoQiang, Li, ShaoHua, Li, RuiQiang, Zhang, ShouZhou, Wang, QingFeng, Van de Peer, Yves, Zhang, JinBo, Wang, XiaoMing. A genome for gnetophytes and early evolution of seed plants. NATURE PLANTS[J]. 2018, 4(2): 82-89, http://dx.doi.org/10.1038/s41477-017-0097-2.
[20] Medina, Rafael, Johnson, Matthew, Liu, Yang, Wilding, Nicholas, Hedderson, Terry A, Wickett, Norman, Goffinet, Bernard. Evolutionary dynamism in bryophytes: Phylogenomic inferences confirm rapid radiation in the moss family Funariaceae. MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2018, 120: 240-247, http://dx.doi.org/10.1016/j.ympev.2017.12.002.
[21] Dong, Shanshan, Zhao, Chaoxian, Chen, Fei, Liu, Yanhui, Zhang, Shouzhou, Wu, Hong, Zhang, Liangsheng, Liu, Yang. The complete mitochondrial genome of the early flowering plant Nymphaea colorata is highly repetitive with low recombination. BMC GENOMICS[J]. 2018, 19(1): https://doaj.org/article/96523adcf7a4496fb7b633977eb0db36.
[22] Simon, Antoine, Liu, Yang, Serusiaux, Emmanuel, Goffinet, Bernard. Complete mitogenome sequence of Ricasolia amplissima (Lobariaceae) reveals extensive mitochondrial DNA rearrangement within the Peltigerales (lichenized ascomycetes). BRYOLOGIST[J]. 2017, 120(3): 335-339, https://www.webofscience.com/wos/woscc/full-record/WOS:000409513100010.
发表著作
(1) Conservative and Dynamic Evolution of Mitochondrial Genomes in Early Land Pl, Springer Science, 2012-02, 第 1 作者

科研活动

   
科研项目
( 1 ) 苔藓植物代表类群的比较基因组学研究, 负责人, 地方任务, 2020-01--2021-12
( 2 ) 利用基因捕获测序技术重建陆地植物系统框架, 负责人, 地方任务, 2019-07--2020-12
( 3 ) 基于三代测序技术的苏铁植物基因组学研究, 负责人, 地方任务, 2019-01--2020-12
( 4 ) 苏铁遗传多样性调查与保护成效评估, 参与, 国家任务, 2019-01--2020-12

指导学生

现指导学生

蔡语清  硕士研究生  086000-生物与医药