基本信息
刘龙奇  男  硕导  其他
电子邮件: liulongqi@genomics.cn
通信地址: 广东省深圳市大鹏新区金沙路国家基因库
邮政编码:

招生信息

   
招生专业
0710Z1-基因组学
0710J3-生物信息学
招生方向
单细胞和空间多组学测序

教育背景

2012-09--2015-07   中国科学院广州生物医院与健康研究院   博士
2010-09--2012-07   中国科学院广州生物医院与健康研究院   硕士
2006-09--2010-07   华南理工大学生物科学与工程学院   学士
学历

工作经历

   
工作简历
2018-12~现在, 深圳华大生命科学研究院, 超级细胞研究所所长
2018-05~现在, 西北大学生命科学学院, 兼职教授
2017-11~2018-12,深圳华大生命科学研究院, 生物技术副研究员/单细胞战略项目负责人
2015-11~2017-11,哈尔滨工业大学/深圳华大生命科学研究, 博士后
社会兼职
2018-07-20-今,西北大学教授, 教授
2018-07-05-今,郑州大学副教授, 副教授,硕士研究生导师

教授课程

单细胞组学实用技术分析培训
爱博物科学实践课程
暑期常用技术培训班
《基因与医学健康》理论教学
越南Vinmec医院定制培训

专利与奖励

   
奖励信息
(1) 广东省自然科学一等奖, 一等奖, 省级, 2019
专利成果
[1] 陈奥, 徐讯, 杨晋, 刘龙奇, 王欧, 黎宇翔, 廖莎, 唐国鑫, 江媛, 徐崇钧, 倪鸣, 章文蔚, 拉多杰·德马纳克, 斯内扎娜·德马纳克. 用于检测核酸空间信息的阵列及检测方法. CN: CN114207105A, 2022-03-18.
[2] 陈奥, 徐讯, 杨晋, 刘龙奇, 王欧, 黎宇翔, 廖莎, 唐国鑫, 江媛, 徐崇钧, 倪鸣, 章文蔚, 拉多杰·德马纳克, 斯内扎娜·德马纳克. 用于检测核酸空间信息的阵列及检测方法. CN: CN114207105A, 2022-03-18.
[3] 王明月, 刘龙奇, 刘传宇, 吴亮, 许江山, 袁月, 商周春. 一种体液游离DNA的文库构建方法及其应用. CN: CN111386362A, 2020-07-07.
[4] 王明月, 刘龙奇, 刘传宇, 吴亮, 许江山, 袁月, 商周春. 一种体液游离DNA的文库构建方法及其应用. CN: CN111386362A, 2020-07-07.
[5] 刘亚, 魏文博, 王磊, 李贵波, 刘龙奇. 便携式微珠洗涤与回收装置及单细胞测序样品处理系统. CN: CN209741157U, 2019-12-06.
[6] 刘亚, 魏文博, 王磊, 李贵波, 刘龙奇. 便携式微珠洗涤与回收装置及单细胞测序样品处理系统. CN: CN209741157U, 2019-12-06.
[7] 王全磊, 商周春, 刘龙奇, 陈芳, 卢森, 高雅, 吴亮, 董国艺, 邓秋婷, 袁月, 刘洋. 一种外泌体微量DNA的建库方法. CN: CN109680343A, 2019-04-26.
[8] 王全磊, 商周春, 刘龙奇, 陈芳, 卢森, 高雅, 吴亮, 董国艺, 邓秋婷, 袁月, 刘洋. 一种外泌体微量DNA的建库方法. CN: CN109680343A, 2019-04-26.

出版信息

   
发表论文
[1] Jiang, Yujia, Hao, Shijie, Chen, Xi, Cheng, Mengnan, Xu, Jiangshan, Li, Chenghao, Zheng, Huiwen, Volpe, Giacomo, Chen, Ao, Liao, Sha, Liu, Chuanyu, Liu, Longqi, Xu, Xun. Spatial Transcriptome Uncovers the Mouse Lung Architectures and Functions. FRONTIERS IN GENETICS[J]. 2022, 13: http://dx.doi.org/10.3389/fgene.2022.858808.
[2] Liu, Chang, Li, Rui, Li, Young, Lin, Xiumei, Zhao, Kaichen, Liu, Qun, Wang, Shuowen, Yang, Xueqian, Shi, Xuyang, Ma, Yuting, Pei, Chenyu, Wang, Hui, Bao, Wendai, Hui, Junhou, Yang, Tao, Xu, Zhicheng, Lai, Tingting, Berberoglu, Michael Arman, Sahu, Sunil Kumar, Esteban, Miguel A, Ma, Kailong, Fan, Guangyi, Li, Yuxiang, Liu, Shiping, Chen, Ao, Xu, Xun, Dong, Zhiqiang, Liu, Longqi. Spatiotemporal mapping of gene expression landscapes and developmental trajectories during zebrafish embryogenesis. DEVELOPMENTAL CELL[J]. 2022, 57(10): 1284-+, http://dx.doi.org/10.1016/j.devcel.2022.04.009.
[3] Shi, Xuyang, Ma, Wen, Duan, Shanshan, Shi, Quan, Wu, Shuo, Hao, Shijie, Dong, Guoyi, Li, Jinxiu, Song, Yumo, Liu, Chang, Lin, Xiumei, Yuan, Yue, Deng, Qiuting, Xu, Jiangshan, Bai, Shiyi, Hou, Yong, Liu, Chuanyu, Liu, Longqi. Single-cell transcriptional diversity of neonatal umbilical cord blood immune cells reveals neonatal immune tolerance. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS[J]. 2022, 608: 14-22, http://dx.doi.org/10.1016/j.bbrc.2022.03.132.
[4] Mazid Md. Abdul, Miguel A. Esteban. Rolling back of human pluripotent stem cells to an 8-cell embryo-like stage. Nature[J]. 2022, [5] Li, Yuejiao, Yang, Tao, Lai, Tingting, You, Lijin, Yang, Fan, Qiu, Jiaying, Wang, Lina, Du, Wensi, Hua, Cong, Xu, Zhicheng, Cai, Jia, Li, Zhiyong, Liu, Yiqun, Li, Ling, Zhang, Minwen, Chen, Jing, Zhang, Lei, Chen, Dongsheng, Wang, Weiwen, Liu, Shiping, Wu, Liang, Zeng, Wenjun, Wang, Bo, Wei, Xiaofeng, Liu, Longqi, Chen, Fengzhen. CDCP: a visualization and analyzing platform for single-cell datasets. JOURNAL OF GENETICS AND GENOMICSnull. 2022, 49(7): 689-692, http://lib.cqvip.com/Qikan/Article/Detail?id=7107942264.
[6] Wang, Mingyue, Hu, Qinan, Lv, Tianhang, Wang, Yuhang, Lan, Qing, Xiang, Rong, Tu, Zhencheng, Wei, Yanrong, Han, Kai, Shi, Chang, Guo, Junfu, Liu, Chao, Yang, Tao, Du, Wensi, An, Yanru, Cheng, Mengnan, Xu, Jiangshan, Lu, Haorong, Li, Wangsheng, Zhang, Shaofang, Chen, Ao, Chen, Wei, Li, Yuxiang, Wang, Xiaoshan, Xu, Xun, Hu, Yuhui, Liu, Longqi. High-resolution 3D spatiotemporal transcriptomic maps of developing Drosophila embryos and larvae. DEVELOPMENTAL CELL[J]. 2022, 57(10): 1271-+, http://dx.doi.org/10.1016/j.devcel.2022.04.006.
[7] Zhang, Xiao, Lai, GuangYao, Volpe, Giacomo, Han, Lei, Maxwell, Patrick H, Liu, LongQi, Esteban, Miguel A, Lai, YiWei. Towards a primate single-cell atlas. ZOOLOGICAL RESEARCH[J]. 2022, 43(4): 691-694, http://dx.doi.org/10.24272/j.issn.2095-8137.2022.212.
[8] Wang, Shiyu, Liu, Yang, Li, Yijian, Lv, Menghua, Gao, Kai, He, Ying, Wei, Wenbo, Zhu, Yonggang, Dong, Xuan, Xu, Xun, Li, Zida, Liu, Longqi, Liu, Ya. High-Throughput Functional Screening of Antigen-Specific T Cells Based on Droplet Microfluidics at a Single-Cell Level. ANALYTICAL CHEMISTRY[J]. 2022, 94(2): 918-926, http://dx.doi.org/10.1021/acs.analchem.1c03678.
[9] Chen, Ao, Liao, Sha, Cheng, Mengnan, Ma, Kailong, Wu, Liang, Lai, Yiwei, Qiu, Xiaojie, Yang, Jin, Xu, Jiangshan, Hao, Shijie, Wang, Xin, Lu, Huifang, Chen, Xi, Liu, Xing, Huang, Xin, Li, Zhao, Hong, Yan, Jiang, Yujia, Peng, Jian, Liu, Shuai, Shen, Mengzhe, Liu, Chuanyu, Li, Quanshui, Yuan, Yue, Wei, Xiaoyu, Zheng, Huiwen, Feng, Weimin, Wang, Zhifeng, Liu, Yang, Wang, Zhaohui, Yang, Yunzhi, Xiang, Haitao, Han, Lei, Qin, Baoming, Guo, Pengcheng, Lai, Guangyao, MunozCanoves, Pura, Maxwell, Patrick H, Thiery, Jean Paul, Wu, QingFeng, Zhao, Fuxiang, Chen, Bichao, Li, Mei, Dai, Xi, Wang, Shuai, Kuang, Haoyan, Hui, Junhou, Wang, Liqun, Fei, JiFeng, Wang, Ou, Wei, Xiaofeng, Lu, Haorong, Wang, Bo, Liu, Shiping, Gu, Ying, Ni, Ming, Zhang, Wenwei, Mu, Feng, Yin, Ye, Yang, Huanming, Lisby, Michael, Cornall, Richard J, Mulder, Jan, Uhlen, Mathias, Esteban, Miguel A, Li, Yuxiang, Liu, Longqi, Xu, Xun, Wang, Jian. Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball-patterned arrays. CELL[J]. 2022, 185(10): 1777-+, http://dx.doi.org/10.1016/j.cell.2022.04.003.
[10] Xu, Jiangshan, Hao, Shijie, Shi, Quan, Deng, Qiuting, Jiang, Yujia, Guo, Pengcheng, Yuan, Yue, Shi, Xuyang, Shangguan, Shuncheng, Zheng, Huiwen, Lai, Guangyao, Huang, Yaling, Wang, Yang, Song, Yumo, Liu, Yang, Wu, Liang, Wang, Zhifeng, Cheng, Jiehui, Wei, Xiaoyu, Cheng, Mengnan, Lai, Yiwei, Volpe, Giacomo, Esteban, Miguel A, Hou, Yong, Liu, Chuanyu, Liu, Longqi. Transcriptomic Profile of the Mouse Postnatal Liver Development by Single-Nucleus RNA Sequencing. FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY[J]. 2022, 10: http://dx.doi.org/10.3389/fcell.2022.833392.
[11] Yuan, Yue, Deng, Qiuting, Wei, Xiaoyu, Liu, Yang, Lan, Qing, Jiang, Yu, Yu, Yeya, Guo, Pengcheng, Xu, Jiangshan, Yu, Cong, Han, Lei, Cheng, Mengnan, Wu, Peiying, Zhang, Xiao, Lai, Yiwei, Volpe, Giacomo, Esteban, Miguel A, Yang, Huanming, Liu, Chuanyu, Liu, Longqi. The Chromatin Accessibility Landscape of Adult Rat. FRONTIERS IN GENETICS[J]. 2021, 12: https://doaj.org/article/34010e48a58843f388991e3d8076cdd1.
[12] Lei Han, Longqi Liu, Yong Hou, Chuanyu Liu, Miguel A Esteban, Giacomo Volpe, Yiwei Lai, Yang Liu, Shuncheng Shangguan, Peiying Wu, Peng Fan, Yue Yuan, Yiping Guo, Qing Lan, Qiuting Deng, Xiaoyu Wei, Yeya Yu. Single-Nucleus Chromatin Accessibility Landscape Reveals Diversity in Regulatory Regions Across Distinct Adult Rat Cortex. FRONTIERS IN MOLECULAR NEUROSCIENCE,14,(2021-05-17). 2021, http://gooa.las.ac.cn/external/index?type=-1&pid=1729305.
[13] Niu, Yuyu, Sun, Nianqin, Li, Chang, Lei, Ying, Huang, Zhihao, Wu, Jun, Si, Chenyang, Dai, Xi, Liu, Chuanyu, Wei, Jingkuan, Liu, Longqi, Feng, Su, Kang, Yu, Si, Wei, Wang, Hong, Zhang, E, Zhao, Lu, Li, Ziwei, Luo, Xi, Cui, Guizhong, Peng, Guangdun, Belmonte, Juan Carlos Izpisua, Ji, Weizhi, Tan, Tao. Dissecting primate early post-implantation development using long-term in vitro embryo culture. SCIENCE[J]. 2019, 366(6467): 837-+, https://www.webofscience.com/wos/woscc/full-record/WOS:000496946200046.
[14] Fan, Guangyi, Zhang, Yaolei, Liu, Xiaochuan, Wang, Jiahao, Sun, Zeguo, Sun, Shuai, Zhang, He, Chen, Jianwei, Lv, Meiqi, Han, Kai, Tan, Xiaoxuan, Hu, Jie, Guan, Rui, Fu, Yuanyuan, Liu, Shanshan, Chen, Xi, Xu, Qiwu, Qin, Yating, Liu, Longqi, Bai, Jie, Wang, Ou, Tang, Jingbo, Lu, Haorong, Shang, Zhouchun, Wang, Bo, Hu, Guohai, Zhao, Xia, Zou, Yan, Chen, Ao, Gong, Meihua, Zhang, Wenwei, Lee, Simon M Y, Li, Songhai, Liu, Junnian, Li, Zhen, Lu, Yishan, Sabir, Jamal S M, Sabir, Mumdooh J, Khan, Muhummadh, Hajrah, Nahid H, Yin, Ye, Kristiansen, Karsten, Yang, Huanming, Wang, Jian, Xu, Xun, Liu, Xin. The first chromosome-level genome for a marine mammal as a resource to study ecology and evolution. MOLECULAR ECOLOGY RESOURCES[J]. 2019, 19(4): 944-956, http://dx.doi.org/10.1111/1755-0998.13003.
[15] Longqi Liu, Lizhi Leng, Chuanyu Liu, Changfu Lu, Yue Yuan, Liang Wu, Fei Gong, Shuoping Zhang, Xiaoyu Wei, Mingyue Wang, Lei Zhao, Liang Hu, Jian Wang, Huanming Yang, Shida Zhu, Fang Chen, Guangxiu Lu, Zhouchun Shang, Ge Lin. An integrated chromatin accessibility and transcriptome landscape of human pre-implantation embryos. NATURE COMMUNICATIONS[J]. 2019, 10(1): 1-11, https://doaj.org/article/f2377bee5d8a4fa08fc7cda946aac81e.
[16] Liu Longqi. Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation.. Gigascience. 2019, [17] Liu, Chuanyu, Wang, Mingyue, Wei, Xiaoyu, Wu, Liang, Xu, Jiangshan, Dai, Xi, Xia, Jun, Cheng, Mengnan, Yuan, Yue, Zhang, Pengfan, Li, Jiguang, Feng, Taiqing, Chen, Ao, Zhang, Wenwei, Chen, Fang, Shang, Zhouchun, Zhang, Xiuqing, Peters, Brock A, Liu, Longqi. An ATAC-seq atlas of chromatin accessibility in mouse tissues. SCIENTIFIC DATA[J]. 2019, 6(1): http://dx.doi.org/10.1038/s41597-019-0071-0.
[18] He, Yan, Chang, Yue, Bao, Lisui, Yu, Mengjun, Li, Rui, Niu, Jingjing, Fan, Guangyi, Song, Weihao, Seim, Inge, Qin, Yating, Li, Xuemei, Liu, Jinxiang, Kong, Xiangfu, Peng, Meiting, Sun, Minmin, Wang, Mengya, Qu, Jiangbo, Wang, Xuangang, Liu, Xiaobing, Wu, Xiaolong, Zhao, Xi, Wang, Xuliang, Zhang, Yaolei, Guo, Jiao, Liu, Yang, Liu, Kaiqiang, Wang, Yilin, Zhang, He, Liu, Longqi, Wang, Mingyue, Yu, Haiyang, Wang, Xubo, Cheng, Jie, Wang, Zhigang, Xu, Xun, Wang, Jian, Yang, Huanming, Lee, Simon MingYuen, Liu, Xin, Zhang, Quanqi, Qi, Jie. A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth. MOLECULAR ECOLOGY RESOURCES[J]. 2019, 19(5): 1309-1321, [19] Dong, Guoyi, Shang, Zhouchun, Liu, Longqi, Liu, Chuanyu, Ge, Yuping, Wang, Quanlei, Wu, Liang, Chen, Fang, Li, Baolin, Liu, Xin, Xu, Xun, Yang, Huanming, Du, Yutao, Jiang, Hui. Retinoic acid combined with spermatogonial stem cell conditions facilitate the generation of mouse germ-like cells. BIOSCIENCE REPORTS[J]. 2017, 37(2): https://www.webofscience.com/wos/woscc/full-record/WOS:000406241300033.
[20] LiWen, NiSu, QiuXiaohui, ZhaoPing, HuangYinghua, ZhangHui, WuYasong, TangYujia, LiYuan, YingYue. Autophagy and mtorc1 regulate the stochastic phase of somatic cell reprogramming.. NAT CELL BIOL.[J]. 2015, Vol.17 no.6: 715-725, http://www.corc.org.cn/handle/1471x/2159752.
[21] Tian, Weihua, Wang, Yu, Xu, Yan, Guo, Xiangpeng, Wang, Bo, Sun, Li, Liu, Longqi, Cui, Fenggong, Zhuang, Qiang, Bao, Xichen, Schley, Gunnar, Chung, TungLiang, Laslett, Andrew L, Willam, Carsten, Qin, Baoming, Maxwell, Patrick H, Esteban, Miguel A. The Hypoxia-inducible Factor Renders Cancer Cells More Sensitive to Vitamin C-induced Toxicity. JOURNAL OF BIOLOGICAL CHEMISTRY[J]. 2014, 289(6): 3339-3351, http://dx.doi.org/10.1074/jbc.M113.538157.
[22] Liu, Longqi, Xu, Yan, He, Minghui, Zhang, Meng, Cui, Fenggong, Lu, Leina, Yao, Mingze, Tian, Weihua, Benda, Christina, Zhuang, Qiang, Huang, Zhijian, Li, Wenjuan, Li, Xiangchun, Zhao, Ping, Fan, Wenxia, Luo, Zhiwei, Li, Yuan, Wu, Yasong, Hutchins, Andrew P, Wang, Dongye, Tse, HungFat, Schambach, Axel, Frampton, Jon, Qin, Baoming, Bao, Xichen, Yao, Hongjie, Zhang, Biliang, Sun, Hao, Pei, Duanqing, Wang, Huating, Wang, Jun, Esteban, Miguel A. Transcriptional Pause Release Is a Rate-Limiting Step for Somatic Cell Reprogramming. CELL STEM CELL[J]. 2014, 15(5): 574-588, http://dx.doi.org/10.1016/j.stem.2014.09.018.
[23] Xu, Yan, Liu, Longqi, Laslett, Andrew L, Esteban, Miguel A. CELL REPROGRAMMING Into the groove. NATURE MATERIALS[N]. 2013, 12(12): 1082-1084, https://www.webofscience.com/wos/woscc/full-record/WOS:000327458400008.
[24] Miguel A Esteban, Biliang Zhang. MicroRNA Cluster 302-367 Enhances Somatic Cell Reprogramming by Accelerating a Mesenchymal-to-Epithelial Transition. THE JOURNAL OF BIOLOGICAL CHEMISTRY[J]. 2011, 286(19): 17359-17364, http://dx.doi.org/10.1074/jbc.C111.235960.
[25] Zhuang Qiang, Qing Xiaobing, Ying Yue, Wu Haitao, Benda Christina, Lin Jiao, Huang Zhijian, Liu Longqi, Xu Yan, Bao Xichen, Qin Baoming, Pei Duanqing, Esteban Miguel A.. Class IIa Histone Deacetylases and Myocyte Enhancer Factor 2 Proteins Regulate the Mesenchymal-to-Epithelial Transition of Somatic Cell Reprogramming *. THE JOURNAL OF BIOLOGICAL CHEMISTRY. 288(17): 12022-12031, http://dx.doi.org/10.1074/jbc.M113.460766.
[26] Linnan Zhu, Penghui Yang, Yingze Zhao, Zhenkun Zhuang, Zhifeng Wang, Rui Song, Jie Zhang, Chuanyu Liu, Qianqian Gao, Qumiao Xu, Xiaoyu Wei, HaiXi Sun, Beiwei Ye, Yanan Wu, Ning Zhang, Guanglin Lei, Linxiang Yu, Jin Yan, Guanghao Diao, Fanping Meng, Changqing Bai, Panyong Mao, Yeya Yu, Mingyue Wang, Yue Yuan, Qiuting Deng, Ziyi Li, Yunting Huang, Guohai Hu, Yang Liu, Xiaoqian Wang, Ziqian Xu, Peipei Liu, Yuhai Bi, Yi Shi, Shaogeng Zhang, Zhihai Chen, Jian Wang, Xun Xu, Guizhen Wu, Fusheng Wang, George F Gao, Longqi Liu, William J Liu. Single-cell sequencing of peripheral blood mononuclear cells reveals distinct immune response landscapes of COVID-19 and influenza patients. IMMUNITY. http://dx.doi.org/10.1016/j.immuni.2020.07.009.

科研活动

   
科研项目
( 1 ) 不同组织与疾病来源的iPS多能性差异及其调控的分子机制研究, 参与, 国家级, 2011-01--2015-08
( 2 ) 单细胞表观基因组测序技术开发与应用, 主持, 市地级, 2015-10--2017-12
( 3 ) 单细胞染色质开放区域和转录组同时测序技术开发, 主持, 研究所(学校), 2017-04--2017-12
( 4 ) 单细胞技术开发与应用, 主持, 市地级, 2018-09--2021-12
( 5 ) 利用单细胞多组学测序技术鉴定人类早期胚胎核心调控因子, 主持, 国家级, 2020-01--2022-12
参与会议
(1)Massively parallel single-cell sequencing   测序者大会   2019-12-19
(2)Massively parallel single-cell sequencing   2019-09-21
(3)Applications of DNA nanoball sequencing in single cell biology   2019-05-20
(4)Parallel assay of single-cell chromatin accessibility and transcriptome   2017-10-29

指导学生

现指导学生

刘聿洋  硕士研究生  0710J3-生物信息学  

杨柳俏  硕士研究生  0710Z1-基因组学  

邢雅楠  硕士研究生  0710Z1-基因组学  

涂桢铖  硕士研究生  086000-生物与医药  

潘峰宇  硕士研究生  086000-生物与医药  

张潍聪  硕士研究生  0710J3-生物信息学