基本信息
任捷 女 博导 中国科学院北京基因组研究所
电子邮件: renjie@big.ac.cn
通信地址: 北京市朝阳区北辰西路1号院104号楼
邮政编码: 100101
电子邮件: renjie@big.ac.cn
通信地址: 北京市朝阳区北辰西路1号院104号楼
邮政编码: 100101
研究领域
遗传和表观遗传信息在子代精确稳定传递,是维持真核生物体生存的关键。基因组不稳定性影响衰老进程、肿瘤发生和肿瘤细胞异质性,其中表观遗传调控也起着重要作用。有别于DNA损伤修复机制的传统研究,课题组致力于拓展生物体如何通过对不同层次分子事件的调控来避免DNA发生损伤这一前沿领域新方向,阐明维护基因组稳定性的新机制。基因组转录和复制作为染色质生命活动的两个核心事件,传统方法上多作为独立的事件被分别研究,而这两者之间相互作用的重要性正在得到学界越来越广泛的重视。当转录和复制发生碰撞时,被阻滞的复制叉需要被稳定以便再次激活而完成复制,同时被滞留的RNA聚合酶(RNAP)需要被释放而不再成为复制叉前行的阻碍。在病理学上,两者碰撞导致染色体断裂而产生多种脆性位点,是其对基因组不稳定性发生作用的直接反映。在这一新兴的交叉领域,有许多亟待研究和解答的问题,其中通过表观遗传机机制化解复制和转录碰撞是一个创新型角度,其机制也是关键科学问题。对其深入探讨不仅在基础生命科学研究领域,同时对于人类疾病防治策略都具有重要的意义。
课题组研究方向主要包括:
1. 解析转录和复制碰撞中维护基因组稳定性的表观遗传机理及在精准医学中的应用;
2. 探索RNA介导的染色质调控在干细胞和衰老中的应用;
3. 研发表观遗传、基因组功能分析的多维组学体系和单分子测序新技术
招生信息
招生专业
071022-基因组学071007-遗传学071010-生物化学与分子生物学
招生方向
基因组稳定性,表观遗传,精准医学,单分子测序
教育工作经历
2000-2004 南京大学 学士
2005-2010 美国纽约州立大学石溪分校 博士
2011-2018 美国冷泉港实验室 博士后
2019-至今 中科院北京基因组研究所 研究员
出版信息
发表论文
[1] 郝金栋, 刘倩兰, Liu, Mengxia, Yang, Xin, 王柳明, 苏思毅, Xiao Wen, 张梦琦, zhang yichang, 张澜, Chen, YuSheng, 杨运桂, 任捷. DDX21 mediates co-transcriptional RNA m6A modification to promote transcription termination and genome stability. Molecular Cell[J]. 2024, 第 13 作者 通讯作者 [2] 吴若晨, 张维绮, 任捷, 刘光慧. Targeting aging and age-related diseases with vaccines. nature aging[J]. 2024, 第 3 作者 通讯作者 [3] Bao, Hainan, Cao, Jiani, Chen, Mengting, Chen, Min, Chen, Wei, Chen, Xiao, Chen, Yanhao, Chen, Yu, Chen, Yutian, Chen, Zhiyang, Chhetri, Jagadish K, Ding, Yingjie, Feng, Junlin, Guo, Jun, Guo, Mengmeng, He, Chuting, Jia, Yujuan, Jiang, Haiping, Jing, Ying, Li, Dingfeng, Li, Jiaming, Li, Jingyi, Liang, Qinhao, Liang, Rui, Liu, Feng, Liu, Xiaoqian, Liu, Zuojun, Luo, Oscar Junhong, Lv, Jianwei, Ma, Jingyi, Mao, Kehang, Nie, Jiawei, Qiao, Xinhua, Sun, Xinpei, Tang, Xiaoqiang, Wang, Jianfang, Wang, Qiaoran, Wang, Siyuan, Wang, Xuan, Wang, Yaning, Wang, Yuhan, Wu, Rimo, Xia, Kai, Xiao, FuHui, Xu, Lingyan, Xu, Yingying, Yan, Haoteng, Yang, Liang, Yang, Ruici, Yang, Yuanxin, Ying, Yilin, Zhang, Le, Zhang, Weiwei, Zhang, Wenwan, Zhang, Xing, Zhang, Zhuo, Zhou, Min, Zhou, Rui, Zhu, Qingchen, Zhu, Zhengmao, Cao, Feng, Cao, Zhongwei, Chan, Piu, Chen, Chang, Chen, Guobing, Chen, HouZao, Chen, Jun, Ci, Weimin, Ding, BiSen, Ding, Qiurong, Gao, Feng, Han, JingDong J, Huang, Kai, Ju, Zhenyu, Kong, QingPeng, Li, Ji, Li, Jian, Li, Xin, Liu, Baohua, Liu, Feng, Liu, Lin, Liu, Qiang, Liu, Qiang, Liu, Xingguo, Liu, Yong, Luo, Xianghang, Ma, Shuai, Ma, Xinran, Mao, Zhiyong, Nie, Jing, Peng, Yaojin, Qu, Jing, Ren, Jie, Ren, Ruibao, Song, Moshi, Zhou Songyang, Sun, Yi Eve, Sun, Yu, Tian, Mei, Wang, Shusen, Wang, Si, Wang, Xia, Wang, Xiaoning, Wang, YanJiang, Wang, Yunfang, Wong, Catherine C L, Xiang, Andy Peng, Xiao, Yichuan, Xie, Zhengwei, Xu, Daichao, Ye, Jing, Yue, Rui, Zhang, Cuntai, Zhang, Hongbo, Zhang, Liang, Zhang, Weiqi, Zhang, Yong, Zhang, YunWu, Zhang, Zhuohua, Zhao, Tongbiao, Zhao, Yuzheng, Zhu, Dahai, Zou, Weiguo, Pei, Gang, Liu, GuangHui, Aging Biomarker Consortium. Biomarkers of aging. SCIENCE CHINA-LIFE SCIENCES[J]. 2023, 第 93 作者 通讯作者 66(5): 893-1066, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=7491049&detailType=1.[4] Shuhui Sun, Shuai Ma, Yusheng Cai, Si Wang, Jie Ren, Yuanhan Yang, Jiale Ping, Xuebao Wang, Yiyuan Zhang, Haoteng Yan, Wei Li, Concepcion Rodriguez Esteban, Yan Yu, Feifei Liu, Juan Carlos Izpisua Belmonte, Weiqi Zhang, Jing Qu, GuangHui Liu. A single-cell transcriptomic atlas of exercise-induced anti-inflammatory and geroprotective effects across the body. THE INNOVATION[J]. 2023, 第 5 作者4(1): http://dx.doi.org/10.1016/j.xinn.2023.100380.[5] Ma Shuai, Chi Xu, Cai Yusheng, Ji Zhejun, Wang Si, Ren Jie, Liu Guang-Hui. Decoding aging hallmarks at the single-cell level. Annual Review of Biomedical Data Science[J]. 2023, 第 6 作者 通讯作者 [6] Zeming Wu, Mingming Lu, Di Liu, Yue Shi, Jie Ren, Si Wang, Ying Jing, Sheng Zhang, Qian Zhao, Hongyu Li, Zhihui Yu, Zunpeng Liu, Shijia Bi, Tuo Wei, YunGui Yang, Jingfa Xiao, Juan Carlos Izpisua Belmonte, Jing Qu, Weiqi Zhang, Weimin Ci, GuangHui Liu. m6A epitranscriptomic regulation of tissue homeostasis during primate aging.. Nature Aging[J]. 2023, 第 5 作者3: 705-721, [7] Xiaoqian Liu, Zunpeng Liu, Zeming Wu, Jie Ren, Yanling Fan, Liang Sun, Gang Cao, Yuyu Niu, Baohu Zhang, Qianzhao Ji, Xiaoyu Jiang, Cui Wang, Qiaoran Wang, Zhejun Ji, Lanzhu Li, Concepcion Rodriguez Esteban, Kaowen Yan, Wei Li, Yusheng Cai, Si Wang, Aihua Zheng, Yong E Zhang, Shengjun Tan, Yingao Cai, Moshi Song, Falong Lu, Fuchou Tang, Weizhi Ji, Qi Zhou, Juan Carlos Izpisua Belmonte, Weiqi Zhang, Jing Qu, GuangHui Liu. Resurrection of endogenous retroviruses during aging reinforces senescence. CELL[J]. 2023, 第 4 作者186(2): 287-304.e26, http://dx.doi.org/10.1016/j.cell.2022.12.017.[8] Wu Zeming, Ren Jie, Guang-Hui Liu . Glutathione restoration: a sword to combat skeletal muscle stem cell aging. Life Metabolism[J]. 2023, 第 2 作者 通讯作者 [9] Yaobin Jing, Xiaoyu Jiang, Qianzhao Ji, Zeming Wu, Wei Wang, Zunpeng Liu, Pedro GuillenGarcia, Concepcion Rodriguez Esteban, Pradeep Reddy, Steve Horvath, Jingyi Li, Lingling Geng, Qinchao Hu, Si Wang, Juan Carlos Izpisua Belmonte, Jie Ren, Weiqi Zhang, Jing Qu, GuangHui Liu. Genome-wide CRISPR activation screening in senescent cells reveals SOX5 as a driver and therapeutic target of rejuvenation. CELL STEM CELL[J]. 2023, 第 16 作者 通讯作者 http://dx.doi.org/10.1016/j.stem.2023.09.007.[10] Yusheng Cai, Muzhao Xiong, Zijuan Xin, Chengyu Liu, Jie Ren, Xiying Yang, Jinghui Lei, Wei Li, Feifei Liu, Qun Chu, Yiyuan Zhang, Jian Yin, Yanxia Ye, Dingyi Liu, Yanling Fan, Shuhui Sun, Yaobin Jing, Qian Zhao, Liyun Zhao, Shanshan Che, Yandong Zheng, Haoteng Yan, Shuai Ma, Si Wang, Juan Carlos Izpisua Belmonte, Jing Qu, Weiqi Zhang, GuangHui Liu. Decoding aging-dependent regenerative decline across tissues at single-cell resolution. CELL STEM CELL[J]. 2023, 第 5 作者30(12): 1674-1691.e8, http://dx.doi.org/10.1016/j.stem.2023.09.014.[11] Ren, Jie, Song, Moshi, Zhang, Weiqi, Cai, JianPing, Cao, Feng, Cao, Zhongwei, Chan, Piu, Chen, Chang, Chen, Guobing, Chen, HouZao, Chen, Jun, Chen, XiaoChun, Ci, Weimin, Ding, BiSen, Ding, Qiurong, Gao, Feng, Gao, Shaorong, Han, JingDong J, He, QiYang, Huang, Kai, Ju, Zhenyu, Kong, QingPeng, Li, Ji, Li, Jian, Li, Jingyi, Li, Xin, Liu, Baohua, Liu, Feng, Liu, JunPing, Liu, Lin, Liu, Qiang, Liu, Qiang, Liu, Xingguo, Liu, Yong, Luo, Xianghang, Ma, Shuai, Ma, Xinran, Mao, Zhiyong, Nie, Jing, Peng, Yaojin, Qu, Jing, Ren, Ruibao, Song, Weihong, Songyang, Zhou, Sun, Liang, Sun, Yi Eve, Sun, Yu, Tian, Mei, Tian, XiaoLi, Tian, Ye, Wang, Jianwei, Wang, Shusen, Wang, Si, Wang, Wengong, Wang, Xia, Wang, Xiaoning, Wang, YanJiang, Wang, Yunfang, Wong, Catherine C L, Xiang, Andy Peng, Xiao, Yichuan, Xiao, ZhiXiong, Xie, Zhengwei, Xiong, Wei, Xu, Daichao, Yang, Ze, Ye, Jing, Yu, Wei, Yue, Rui, Zhang, Cuntai, Zhang, Hongbo, Zhang, Liang, Zhang, Xinchao, Zhang, Yong, Zhang, YunWu, Zhang, Zhuohua, Zhao, Tongbiao, Zhao, Yuzheng, Zhou, Zhongjun, Zhu, Dahai, Zou, Weiguo, Pei, Gang, Liu, GuangHui. The Aging Biomarker Consortium represents a new era for aging research in China. NATURE MEDICINE[J]. 2023, 第 1 作者29(9): 2162-2165, http://dx.doi.org/10.1038/s41591-023-02444-y.[12] 武泽明, 任捷, 刘光慧. Hepatocyte reprogramming in liver regeneration: Biological mechanisms and applications. Aging Cell[J]. 2023, 第 2 作者 通讯作者 [13] Shuhui Sun, Jiaming Li, Si Wang, Jingyi Li, 任捷, Zhaoshi Bao, Le Sun, Xibo Ma, Fangshuo Zheng, Shuai Ma, Liang Sun, Min Wang. CHIT1-positive microglia drive motor neuron aging in the primate spinal cord. Nature[J]. 2023, 第 5 作者611-+, [14] Yaobin Jing, Xiaoyu Jiang, Qianzhao Ji, Zeming Wu, Wei Wang, Zunpeng Liu, Pedro GuillenGarcia, Concepcion Rodriguez Esteban, Pradeep Reddy, Steve Horvath, Jingyi Li, Lingling Geng, Qinchao Hu, Si Wang, Juan Carlos Izpisua Belmonte, Jie Ren, Weiqi Zhang, Jing Qu, GuangHui Liu. Genome-wide CRISPR activation screening in senescent cells reveals SOX5 as a driver and therapeutic target of rejuvenation. CELL STEM CELL. 2023, 第 16 作者30(11): 1452-1471.e10, http://dx.doi.org/10.1016/j.stem.2023.09.007.[15] jiang mengmeng, 任捷, Juan Carlos Izpisua Belmonte, 刘光慧. Hepatocyte reprogramming in liver regeneration: Biological mechanisms and applications. The FEBS Journal[J]. 2023, 第 2 作者 通讯作者 [16] Zunpeng Liu, Wei Li, Lingling Geng, Liang Sun, Qiaoran Wang, Yang Yu, Pengze Yan, Chuqian Liang, Jie Ren, Moshi Song, Qian Zhao, Jinghui Lei, Yusheng Cai, Jiaming Li, Kaowen Yan, Zeming Wu, Qun Chu, Jingyi Li, Si Wang, Chunyi Li, JingDong J Han, Reyna HernandezBenitez, Ng ShyhChang, Juan Carlos Izpisua Belmonte, Weiqi Zhang, Jing Qu, GuangHui Liu. Cross-species metabolomic analysis identifies uridine as a potent regeneration promoting factor. CELL DISCOVERY[J]. 2022, 第 9 作者8: [17] Yan, Haoteng, Wang, Ronghao, Ma, Shuai, Huang, Daoran, Wang, Si, Ren, Jie, Lu, Changfa, Chen, Xin, Lu, Xiaoyong, Zheng, Zikai, Zhang, Weiqi, Qu, Jing, Zhou, Yuanchun, Liu, GuangHui. Lineage Landscape: a comprehensive database that records lineage commitment across species. Nucleic Acids Research[J]. 2022, 第 6 作者51(D1): D1061-D1066, http://dx.doi.org/10.1093/nar/gkac951.[18] Liu, Zunpeng, Ji, Qianzhao, Ren, Jie, Yan, Pengze, Wu, Zeming, Wang, Si, Sun, Liang, Wang, Zehua, Li, Jiaming, Sun, Guoqiang, Liang, Chuqian, Sun, Run, Jiang, Xiaoyu, Hu, Jianli, Ding, Yingjie, Wang, Qiaoran, Bi, Shijia, Wei, Gang, Cao, Gang, Zhao, Guoguang, Wang, Hongmei, Zhou, Qi, Belmonte, Juan Carlos Izpisua, Qu, Jing, Zhang, Weiqi, Liu, GuangHui. Large-scale chromatin reorganization reactivates placenta-specific genes that drive cellular aging. DEVELOPMENTAL CELL[J]. 2022, 第 3 作者57(11): 1347-+, [19] Hongkai Zhao, Qianzhao Ji, Zeming Wu, Si Wang, Jie Ren, Kaowen Yan, Zehua Wang, Jianli Hu, Qun Chu, Huifang Hu, Yusheng Cai, Qiaoran Wang, Daoyuan Huang, Zhejun Ji,, Juan Carlos Izpisua Belmonte, Jingyi Li, Moshi Song, Weiqi Zhang, Jing Qu, Guang-Hui Liu. Destabilizing heterochromatin by APOE mediates senescence. Nature Aging[J]. 2022, [20] Li, He, Zhu, Lei, Wang, Rong, Xie, Lihui, Ren, Jie, Ma, Shuai, Zhang, Weiqi, Liu, Xiuxing, Huang, Zhaohao, Chen, Binyao, Li, Zhaohuai, Feng, Huyi, Liu, GuangHui, Wang, Si, Qu, Jing, Su, Wenru. Aging weakens Th17 cell pathogenicity and ameliorates experimental autoimmune uveitis in mice. Protein & Cell[J]. 2022, 第 5 作者13(6): 422-445, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=7254564&detailType=1.[21] Chuqian Liang, Qiong Ke, Zunpeng Liu, Jie Ren, Weiqi Zhang, Jianli Hu, Zehua Wang, Hong Chen, Kai Xia, Xingqiang Lai, Qiaoran Wang, Kuan Yang, Wei Li, Zeming Wu, Chao Wang, Haoteng Yan, Xiaoyu Jiang, Zhejun Ji, Miyang Ma, Xiao Long, Si Wang, Huating Wang, Hao Sun, JuanCarlosIzpisua Belmonte, Jing Qu, AndyPeng Xiang, GuangHui Liu. BMAL1 moonlighting as a gatekeeper for LINE1 repression and cellular senescence in primates. NUCLEIC ACIDS RESEARCH[J]. 2022, 第 4 作者50(6): 3323-3347, [22] Ma Shuai, Si Wang, Yanxia Ye, Jie Ren, Ruiqing Chen, Wei Li, Jiaming Li, Liyun Zhao, Qian Zhao, Guoqiang Sun, Ying Jing, Yuesheng Zuo, Muzhao Xiong, Yuanhan Yang, Qiaoran Wang, Jinghui Lei, Shuhui Sun, Xiao Long, Moshi Song, shuyang yu, Piu Chan, Jianwei Wang, Qi Zhou, Juan Carlos Izpisua Belmonte, Jing qu, Weiqi Zhang, Guang-Hui Liu . Heterochronic parabiosis induces stem cell revitalization and systemic rejuvenation across aged tissues.. Cell Stem Cell[J]. 2022, 第 4 作者29(6): 990-1005, https://www.sciencedirect.com/science/article/pii/S1934590922001709.[23] Wang, Kang, Liu, Huicong, Hu, Qinchao, Wang, Lingna, Liu, Jiaqing, Zheng, Zikai, Zhang, Weiqi, Ren, Jie, Zhu, Fangfang, Liu, GuangHui. Epigenetic regulation of aging: implications for interventions of aging and diseases. SIGNAL TRANSDUCTION AND TARGETED THERAPY. 2022, 第 8 作者 通讯作者 7(1): 4283-4304, http://dx.doi.org/10.1038/s41392-022-01211-8.[24] Zhang, Sheng, Wu, Zeming, Shi, Yue, Wang, Si, Ren, Jie, Yu, Zihui, Huang, Daoyuan, Yan, Kaowen, He, Yifang, Liu, Xiaoqian, Ji, Qianzhao, Liu, Beibei, Liu, Zunpeng, Qu, Jing, Liu, GuangHui, Ci, Weimin, Wang, Xiaoqun, Zhang, Weiqi. FTO stabilizes MIS12 and counteracts senescence. 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Protein & Cell[J]. 2021, 第 3 作者12(9): 695-716, http://dx.doi.org/10.1007/s13238-021-00852-9.[30] He Ming, Chi Xu, Ren Jie. Applications of Oxford Nanopore Sequencing in Schizosaccharomyces pombe. Methods in Molecular Biology[J]. 2021, 第 3 作者 通讯作者 [31] Wu, Zeming, Shi, Yue, Lu, Mingming, Song, Moshi, Yu, Zihui, Wang, Jilu, Wang, Si, Ren, Jie, Yang, YunGui, Liu, GuangHui, Zhang, Weiqi, Ci, Weimin, Qu, Jing. METTL3 counteracts premature aging via m(6)A-dependent stabilization of MIS12 mRNA. NUCLEIC ACIDS RESEARCH[J]. 2020, 第 8 作者48(19): 11083-11096, https://www.webofscience.com/wos/woscc/full-record/WOS:000606018400039.[32] Pengze Yan, Jie Ren, Weiqi Zhang, Jing Qu, GuangHui Liu. Protein quality control of cell stemness. 细胞再生(英文)[J]. 2020, 第 2 作者9(1): 1-11, http://lib.cqvip.com/Qikan/Article/Detail?id=7108164441.[33] Bi, Shijia, Liu, Zunpeng, Wu, Zeming, Wang, Zehua, Liu, Xiaoqian, Wang, Si, Ren, Jie, Yao, Yan, Zhang, Weiqi, Song, Moshi, Liu, GuangHui, Qu, Jing. SIRT7 antagonizes human stem cell aging as a heterochromatin stabilizer. PROTEIN & CELL[J]. 2020, 第 7 作者11(7): 483-504, http://lib.cqvip.com/Qikan/Article/Detail?id=7102619525.[34] Yan, Pengze, Liu, Zunpeng, Song, Moshi, Wu, Zeming, Xu, Wei, Li, Kuan, Ji, Qianzhao, Wang, Si, Liu, Xiaoqian, Yan, Kaowen, Esteban, Concepcion Rodriguez, Ci, Weimin, Belmonte, Juan Carlos Izpisua, Xie, Wei, Ren, Jie, Zhang, Weiqi, Sun, Qianwen, Qu, Jing, Liu, GuangHui. Genome-wide R-loop Landscapes during Cell Differentiation and Reprogramming. CELL REPORTS[J]. 2020, 第 15 作者32(1): http://dx.doi.org/10.1016/j.celrep.2020.107870.[35] Hu, Huifang, Ji, Qianzhao, Song, Moshi, Ren, Jie, Liu, Zunpeng, Wang, Zehua, Liu, Xiaoqian, Yan, Kaowen, Hu, Jianli, Jing, Yaobin, Wang, Si, Zhang, Weiqi, Liu, GuangHui, Qu, Jing. ZKSCAN3 counteracts cellular senescence by stabilizing heterochromatin. NUCLEIC ACIDS RESEARCH[J]. 2020, 第 4 作者48(11): 6001-6018, http://dx.doi.org/10.1093/nar/gkaa425.[36] Liu Minghui, Ren Jie. 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