发表论文
（1） Interpretable identification of cancer genes across biological networks via transformer-powered graph representation learning, Nature Biomedical Engineering, 2025, 第 5 作者 通讯作者（2） Multi-Axis Attention with Convolution Parallel Block for Organoid Segmentation, IEEE/CAA Journal of Automatica Sinica, 2024, 第 4 作者 通讯作者（3） A Distributed Framework for Large-scale Protein-protein Interaction Data Analysis and Prediction Using MapReduce, IEEE-CAA JOURNAL OF AUTOMATICA SINICA, 2022, 第 1 作者（4） A Distributed Framework for Large-scale Protein-protein Interaction Data Analysis and Prediction Using MapReduce, A Distributed Framework for Large-scale Protein-protein Interaction Data Analysis and Prediction Using MapReduce, 自动化学报:英文版, 2022, 第 1 作者（5） A Novel Method to Predict Drug-Target Interactions Based on Large-Scale Graph Representation Learning, CANCERS, 2021, 第 3 作者（6） Predicting HIV-1 Protease Cleavage Sites With Positive-Unlabeled Learning, FRONTIERS IN GENETICS, 2021, 第 2 作者 通讯作者（7） A survey on computational models for predicting protein-protein interactions, BRIEFINGS IN BIOINFORMATICS, 2021, 第 1 作者（8） Exploiting higher-order patterns for community detection in attributed graphs, INTEGRATED COMPUTER-AIDED ENGINEERING, 2021, 第 1 作者（9） HiSCF: leveraging higher-order structures for clustering analysis in biological networks, BIOINFORMATICS, 2021, 第 1 作者 通讯作者（10） Automatic Detection of Melanins and Sebums from Skin Images Using a Generative Adversarial Network, COGNITIVE COMPUTATION, 2021, 第 1 作者 通讯作者（11） An Efficient Computational Model for Large-Scale Prediction of Protein-Protein Interactions Based on Accurate and Scalable Graph Embedding, FRONTIERS IN GENETICS, 2021, 第 3 作者（12） Generalized Nesterov’s Acceleration-incorporated, Non-negative and Adaptive Latent Factor Analysis, IEEE Transactions on Services Computing, 2021, （13） An Experimental Investigation into Promoting Mental Health Service Use on Social Media: Effects of Source and Comments, INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH, 2020, 第 2 作者 通讯作者（14） A Variational Bayesian Framework for Cluster Analysis in a Complex Network, IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, 2020, 第 1 作者（15） Non-Negativity Constrained Missing Data Estimation for High-Dimensional and Sparse Matrices from Industrial Applications., IEEE TRANSACTIONS ON CYBERNETICS, 2020, 第 4 作者（16） Efficiently Detecting Protein Complexes from Protein Interaction Networks via Alternating Direction Method of Multipliers, IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2019, 第 1 作者（17） Incorporating the Coevolving Information of Substrates in Predicting HIV-1 Protease Cleavage Sites., IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2019, （18） Automatic hierarchy classification in venation networks using directional morphological filtering for hierarchical structure traits extraction, COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2019, 第 4 作者（19） Phenotype Extraction Extraction Based on Word Embedding to Sentence Embedding Cascaded Approach, IEEE TRANSACTIONS ON NANOBIOSCIENCE, 2018, 第 4 作者（20） A gene-phenotype relationship extraction pipeline from the biomedical literature using a representation learning approach, BIOINFORMATICS, 2018, 第 8 作者（21） Learning Latent Factors for Community Identification and Summarization, IEEE ACCESS, 2018, 第 2 作者（22） Efficiently predicting large-scale protein-protein interactions using MapReduce, COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2017, 第 1 作者 通讯作者（23） Extracting Coevolutionary Features from Protein Sequences for Predicting Protein-Protein Interactions, IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2017, 第 1 作者 通讯作者（24） Discovering second-order sub-structure associations in drug molecules for side-effect prediction, 2017年IEEE生物信息学和生物医学国际会议 (BIBM), 2017, 第 3 作者
