基本信息
刘山林  男    中国科学院动物研究所
电子邮件: shanlin.liu@ioz.ac.cn
通信地址: 中国科学院动物研究所
邮政编码:

招生信息

   
招生专业
0710Z1-基因组学
071002-动物学
招生方向
物种形成、保护基因组学、古基因组学

教育背景

2015-09--2018-09   丹麦哥本哈根大学   博士

工作经历

   
工作简历
2023-11~现在, 中国科学院动物研究所, 研究员
2015-09~2018-09,丹麦哥本哈根大学, 博士
社会兼职
2023-01-01-2025-12-31,中国昆虫学会传粉专业委员会, 副主任委员
2023-01-01-2025-12-31,中国昆虫学会蛾类专业委员会, 委员
2022-01-01-2025-12-31,Ecological Entomology, 编委

专利与奖励

   
专利成果
( 1 ) 一种利用宏基因组和机器学习进行蜂蜜蜜源地追踪的方法, 2021, 第 2 作者, 专利号: CN113674003A

( 2 ) 批量获得高精度昆虫COI基因条形码的方法和试剂盒, 2018, 第 1 作者, 专利号: CN107937500A

( 3 ) 一种利用PacBio单分子测序批量高精度获得昆虫COI基因条形码区域的方法, 2018, 第 1 作者, 专利号: CN107641646A

出版信息

   
发表论文
(1) Convergent molecular evolution of thermogenesis and circadian rhythm in Arctic ruminants, PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2023, 第 7 作者
(2) Metabarcoding reveals seasonal and spatial patterns of arthropod community assemblages in two contrasting habitats: Desert and oasis of the Baja California Peninsula, Mexico, DIVERSITY AND DISTRIBUTIONS, 2023, 第 6 作者
(3) Chromosome-level genome assembly of bean flower thrips Megalurothrips usitatus (Thysanoptera: Thripidae), SCIENTIFIC DATA, 2023, 第 4 作者
(4) Evolutionary analysis of a complete chicken genome, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2023, 第 20 作者
(5) Identification and characterization of two DMD pedigrees with large inversion mutations based on a long-read sequencing pipeline, EUROPEAN JOURNAL OF HUMAN GENETICS, 2023, 第 15 作者
(6) To bee, or not to bee? One leg is the question, MOLECULAR ECOLOGY RESOURCES, 2022, 第 2 作者
(7) The population genomic legacy of the second plague pandemic, CURRENT BIOLOGY, 2022, 第 31 作者
(8) Evolution and diversification of Mountain voles (Rodentia: Cricetidae), COMMUNICATIONS BIOLOGY, 2022, 第 11 作者
(9) The IMD pathway in Hemipteran: A comparative analysis and discussion, DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY, 2022, 第 2 作者
(10) A super pan-genomic landscape of rice, CELL RESEARCH, 2022, 第 34 作者
(11) 基因组学技术在生物多样性保护研究中的应用, Application of genomics technology in biodiversity conservation research, 生物多样性, 2022, 第 1 作者
(12) Viromics of extant insect orders unveil the evolution of the flavi-like superfamily, VIRUS EVOLUTION, 2021, 第 6 作者
(13) Ancient and modem genomes unravel the evolutionary history of the rhinoceros family, CELL, 2021, 第 11 作者
(14) Evolutionary history and divergence times of Odonata (dragonflies and damselflies) revealed through transcriptomics, ISCIENCE, 2021, 第 6 作者
(15) Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations, NATURE COMMUNICATIONS, 2021, 第 8 作者
(16) Mind the numt: Finding informative mitochondrial markers in a giant grasshopper genome, JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH, 2021, 第 6 作者
(17) Analysis of RNA-Seq, DNA Target Enrichment, and Sanger Nucleotide Sequence Data Resolves Deep Splits in the Phylogeny of Cuckoo Wasps (Hymenoptera: Chrysididae), INSECT SYSTEMATICS AND DIVERSITY, 2021, 第 22 作者
(18) Combining molecular datasets with strongly heterogeneous taxon coverage enlightens the peculiar biogeographic history of stoneflies (Insecta: Plecoptera), SYSTEMATIC ENTOMOLOGY, 2021, 第 4 作者
(19) Million-year-old DNA sheds light on the genomic history of mammoths, NATURE, 2021, 第 13 作者
(20) An algorithm for evaluating cylindricity according to the minimum condition, MEASUREMENT, 2020, 第 4 作者
(21) Four myriapod relatives - but who are sisters? No end to debates on relationships among the four major myriapod subgroups, BMC EVOLUTIONARY BIOLOGY, 2020, 第 8 作者
(22) Phylogenomics changes our understanding about earwig evolution, SYSTEMATIC ENTOMOLOGY, 2020, 第 5 作者
(23) Historical isolation facilitates species radiation by sexual selection: Insights from Chorthippus grasshoppers, MOLECULAR ECOLOGY, 2020, 第 4 作者
(24) Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore, GIGASCIENCE, 2020, 第 11 作者
(25) The evolutionary history of extinct and living lions, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2020, 第 12 作者
(26) Genomic architecture of endogenous ichnoviruses reveals distinct evolutionary pathways leading to virus domestication in parasitic wasps, BMC BIOLOGY, 2020, 第 14 作者
(27) Phylogeny of Neotropical Seirinae (Collembola, Entomobryidae) based on mitochondrial genomes, ZOOLOGICA SCRIPTA, 2020, 第 3 作者
(28) Efficient COI barcoding using high throughput single-end 400bp sequencing, BMC GENOMICS, 2020, 第 11 作者
(29) Recent mitochondrial lineage extinction in the critically endangered Javan rhinoceros, ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, 2020, 第 3 作者
(30) NextPolish: a fast and efficient genome polishing tool for long-read assembly, BIOINFORMATICS, 2020, 第 11 作者
(31) The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest, BMC BIOLOGY, 2020, 第 37 作者
(32) Regional assemblages shaped by historical and contemporary factors: Evidence from a species-rich insect group, MOLECULAR ECOLOGY, 2020, 第 8 作者
(33) Phylogenomic analysis sheds light on the evolutionary pathways towards acoustic communication in Orthoptera, NATURE COMMUNICATIONS, 2020, 第 6 作者
(34) Using full-length metabarcoding and DNA barcoding to infer community assembly for speciose taxonomic groups: a case study, EVOLUTIONARY ECOLOGY, 2020, 第 8 作者
(35) Historical isolation facilitates species radiation by sexual selection: Insights from Chorthippus grasshoppers, MOLECULAR ECOLOGY, 2020, 第 4 作者
(36) Gene reuse facilitates rapid radiation and independent adaptation to diverse habitats in the Asian honeybee, SCIENCE ADVANCES, 2020, 第 9 作者
(37) An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola), BMC EVOLUTIONARY BIOLOGY, 2020, 第 16 作者
(38) MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization, NUCLEIC ACIDS RESEARCH, 2019, 第 11 作者
(39) RAD-Seq data advance captive-based conservation of wild bactrian camels (Camelus ferus), CONSERVATIONGENETICS, 2019, 第 11 作者
(40) Re-assessing the diversity of negative strand RNA viruses in insects, PLOS PATHOGENS, 2019, 第 8 作者
(41) Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, 第 13 作者
(42) Evolutionary history of Polyneoptera and its implications for our understanding of early winged insects, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, 第 0 作者
(43) Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny, NATURE, 2019, 第 30 作者
(44) Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny, NATURE, 2019, 第 30 作者
(45) Old World and New World Phasmatodea: Phylogenomics Resolve the Evolutionary History of Stick and Leaf Insects, FRONTIERS IN ECOLOGY AND EVOLUTION, 2019, 第 6 作者
(46) DNA条形码参考数据集构建和序列分析相关的新兴技术, DNA barcoding and emerging reference construction and data analysis technologies, 生物多样性, 2019, 第 1 作者
(47) The evolution and genomic basis of beetle diversity, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, 第 0 作者
(48) The discovery of Neotropical Lepidosira (Collembola, Entomobryidae) and its systematic position, ZOOLOGICA SCRIPTA, 2019, 第 4 作者
(49) An integrative phylogenomic approach illuminates the evolutionary history of cockroaches and termites (Blattodea), PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2019, 第 8 作者
(50) First mitochondrial genomes of five hoverfly species of the genus Eristalinus (Diptera: Syrphidae), GENOME, 2019, 第 9 作者
(51) Functional characterization of the Hyles euphorbiae hawkmoth transcriptome reveals strong expression of phorbol ester detoxification and seasonal cold hardiness genes, FRONTIERS IN ZOOLOGY, 2018, 第 5 作者
(52) Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples, MOLECULAR ECOLOGY RESOURCES, 2018, 第 10 作者
(53) New data, same story: phylogenomics does not support Syrphoidea (Diptera: Syrphidae, Pipunculidae), SYSTEMATIC ENTOMOLOGY, 2018, 第 10 作者
(54) Transcriptome sequence-based phylogeny of chalcidoid wasps (Hymenoptera: Chalcidoidea) reveals a history of rapid radiations, convergence, and evolutionary success, MOLECULAR PHYLOGENETICS AND EVOLUTION, 2018, 第 10 作者
(55) Phylogenomics and the evolution of hemipteroid insects, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2018, 第 23 作者
(56) A phylogenomic analysis of lichen-feeding tiger moths uncovers evolutionary origins of host chemical sequestration, MOLECULAR PHYLOGENETICS AND EVOLUTION, 2018, 第 8 作者
(57) Characterization of viral RNA splicing using whole-transcriptome datasets from host species, SCIENTIFIC REPORTS, 2018, 第 2 作者
(58) Positive and relaxed selection associated with flight evolution and loss in insect transcriptomes, GIGASCIENCE, 2017, 第 2 作者
(59) Filling reference gaps via assembling DNA barcodes using high-throughput sequencing���moving toward barcoding the world, GIGASCIENCE, 2017, 第 1 作者
(60) Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing, GIGASCIENCE, 2017, 第 5 作者
(61) Transcriptome and target DNA enrichment sequence data provide new insights into the phylogeny of vespid wasps (Hymenoptera: Aculeata: Vespidae), MOLECULAR PHYLOGENETICS AND EVOLUTION, 2017, 第 14 作者
(62) Networking Our Way to Better Ecosystem Service Provision, TRENDS IN ECOLOGY & EVOLUTION, 2016, 第 34 作者
(63) Transcriptomic data from panarthropods shed new light on the evolution of insulator binding proteins in insects, BMC GENOMICS, 2016, 第 10 作者
(64) High���throughput monitoring of wild bee diversity and abundance via mitogenomics, METHODS IN ECOLOGY AND EVOLUTION, 2015, 第 5 作者
(65) Multiplex sequencing of pooled mitochondrial genomes���a crucial step toward biodiversity analysis using mito-metagenomics, NUCLEIC ACIDS RESEARCH, 2014, 第 6 作者
(66) SOAPBarcode: revealing arthropod biodiversity through assembly of Illumina shotgun sequences of PCR amplicons, METHODS IN ECOLOGY AND EVOLUTION, 2013, 第 1 作者

科研活动

   
科研项目
( 1 ) BR, 负责人, 中国科学院计划, 2024-01--2026-12
( 2 ) 林下蜂群承载量评估及蜜粉源植物规划, 负责人, 国家任务, 2023-12--2027-12