083001-环境科学
071300-生态学
090301-土壤学

甲烷循环微生物，土壤碳氮循环，环境微生物组学
微生物生态学
环境微生物学

2009-09--2012-07   中国科学院南京地理与湖泊研究所   理学博士
2006-09--2009-03   南京大学   医学硕士
2000-09--2004-07   烟台大学   理学学士

   

2021-06~现在, 中国科学院南京土壤研究所, 副研究员
2017-05~2021-05,中国科学院南京土壤研究所, 助理研究员
2012-07~2017-04,中国科学院南京土壤研究所, 博士后
2004-07~2005-09,山东龙大食品集团, 微生物实验员

   

（1） 第十七届中国土壤学会科学技术奖, 二等奖, 其他, 2022
（2） 南京土壤研究所2021年度科技奖, 二等奖, 研究所（学校）, 2021

   

[1] Yufang Wang, Yuanfeng Cai, Fujiang Hou, Zhongjun Jia. Depth-dependent patterns of activity and abundance of atmospheric methane-oxidizing bacteria in semiarid grassland on the Loess Plateau of China. APPLIED SOIL ECOLOGY. 2024, 第 2 作者  通讯作者  195: http://dx.doi.org/10.1016/j.apsoil.2023.105237.
[2] 王玉芳, 蔡元锋, 侯扶江, BOWATTE, Saman, 贾仲君. 放牧对黄土高原典型草原冬季牧场甲烷氧化菌类群及活性的影响. 土壤学报[J]. 2023, 第 2 作者60(4): 1146-1155, http://lib.cqvip.com/Qikan/Article/Detail?id=7110459988.
[3] 康辰光, 曹伟伟, 蔡元锋, 陈冬峰, 贾仲君. 大于80年自然风干保存土壤中甲烷氧化菌的复苏与富集. 土壤[J]. 2023, 第 3 作者55(1): 111-121, http://soils.issas.ac.cn/tr/article/abstract/tr202203030083?st=article_issue.
[4] Li, Fang, Jia, ZhongJun, Chen, Lin, Han, YanLai, Cai, YuanFeng, Singh, Brajesh K, Zhang, JiaBao. Fixation of CO2 by soil fungi: contribution to organic carbon pool and destination of fixed carbon products. BIOLOGY AND FERTILITY OF SOILS. 2023, 第 5 作者http://dx.doi.org/10.1007/s00374-023-01750-4.
[5] Shi, Limei, Cai, Yuanfeng, Gao, Shengling, Zhang, Min, Chen, Feizhou, Shi, Xiaoli, Yu, Yang, Lu, Yaping, Wu, Qinglong L. Gene expression pattern of microbes associated with large cyanobacterial colonies for a whole year in Lake Taihu. WATER RESEARCH[J]. 2022, 第 2 作者223: http://dx.doi.org/10.1016/j.watres.2022.118958.
[6] Sultana, Nasrin, Zhao, Jun, Cai, Yuanfeng, Rahman, G K M Mustafizur, Alam, Mohammad Saiful, Faheem, Mohammad, Ho, Adrian, Jia, Zhongjun. Methanotrophy-driven accumulation of organic carbon in four paddy soils of Bangladesh. PEDOSPHERE[J]. 2022, 第 3 作者32(2): 348-358, http://dx.doi.org/10.1016/S1002-0160(20)60030-3.
[7] Yuanfeng Cai, Juanli Yun, Zhongjun Jia. Phylogeny and Metabolic Potential of the Methanotrophic Lineage MO3 in Beijerinckiaceae from the Paddy Soil through Metagenome-Assembled Genome Reconstruction. MICROORGANISMS[J]. 2022, 第 1 作者  通讯作者  10(5): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9145241/.
[8] Shi, Limei, Cai, Yuanfeng, Gao, Shengling, Fang, Daoyan, Lu, Yaping, Li, Pengfu, Wu, Qinglong L. Gene expression in the microbial consortia of colonial Microcystis aeruginosa-a potential buoyant particulate biofilm. ENVIRONMENTAL MICROBIOLOGY[J]. 2022, 第 2 作者24(10): 4931-4945, http://dx.doi.org/10.1111/1462-2920.16133.
[9] Wang, Yufang, Cai, Yuanfeng, Hou, Fujiang, Jia, Zhongjun, Bowatte, Saman. Sheep grazing impacts on soil methanotrophs and their activity in typical steppe in the Loess Plateau China. APPLIED SOIL ECOLOGY[J]. 2022, 第 2 作者175: http://dx.doi.org/10.1016/j.apsoil.2022.104440.
[10] Cao, Weiwei, Cai, Yuanfeng, Bao, Zhihua, Wang, Shuwei, Yan, Xiaoyuan, Jia, Zhongjun. Methanotrophy Alleviates Nitrogen Constraint of Carbon Turnover by Rice Root-Associated Microbiomes. FRONTIERS IN MICROBIOLOGY[J]. 2022, 第 2 作者13: http://dx.doi.org/10.3389/fmicb.2022.885087.
[11] Limei SHI, Yuanfeng Cai, Xiaoli SHI, Min ZHANG, Qingfei ZENG, Fanxiang KONG, Ping XU. Community structure of aerobic anoxygenic phototrophic bacteria in algae- and macrophyte-dominated areas in Laihu Taihu Lake, China. Journal of Oceanology and Limnology[J]. 2022, 第 2 作者
[12] Yun, Juanli, Crombie, Andrew T, Ul Haque, Muhammad Farhan, Cai, Yuanfeng, Zheng, Xiaowei, Wang, Jian, Jia, Zhongjun, Murrell, J Colin, Wang, Yanfen, Du, Wenbin. Revealing the community and metabolic potential of active methanotrophs by targeted metagenomics in the Zoige wetland of the Tibetan Plateau. ENVIRONMENTAL MICROBIOLOGY[J]. 2021, 第 4 作者23(11): 6520-6535, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000686297500001.
[13] 方道艳, 施丽梅, 李朋富, 蔡元锋, 张民, 史小丽, 吴庆龙, 于洋. 温度对铜绿微囊藻群体培养体系中细菌群落组成及稳定性的影响. 湖泊科学[J]. 2021, 第 4 作者33(6): 1660-1674, 
[14] Cai, Yuanfeng, Zhou, Xue, Shi, Limei, Jia, Zhongjun. Atmospheric Methane Oxidizers Are Dominated by Upland Soil Cluster Alpha in 20 Forest Soils of China. MICROBIAL ECOLOGY[J]. 2020, 第 1 作者80(4): 859-871, http://dx.doi.org/10.1007/s00248-020-01570-1.
[15] Shiau, YoJin, Lin, ChiaoWen, Cai, Yuanfeng, Jia, Zhongjun, Lin, YuTe, Chiu, ChihYu. Niche Differentiation of Active Methane-Oxidizing Bacteria in Estuarine Mangrove Forest Soils in Taiwan. MICROORGANISMS[J]. 2020, 第 3 作者8(8): https://doaj.org/article/f843a976dd004bd9b01a9ddce5c72d82.
[16] Zhao, Jun, Cai, Yuanfeng, Jia, Zhongjun. The pH-based ecological coherence of active canonical methanotrophs in paddy soils. BIOGEOSCIENCES[J]. 2020, 第 2 作者17(6): 1451-1462, https://doaj.org/article/671a3a7ae1aa4263a5b6b7897f97bffb.
[17] 王玉芳, 蔡元锋, 侯扶江, 贾仲君, SamanBowatte. 典型草地土壤好氧甲烷氧化的微生物生态过程. 微生物学报[J]. 2019, 第 2 作者59(6): 1116-1126, https://actamicro.ijournals.cn/actamicrocn/article/abstract/20190613?st=article_issue.
[18] Sultana, Nasrin, Zhao, Jun, Zheng, Yan, Cai, Yuanfeng, Faheem, Muhammad, Peng, Xianlong, Wang, Weidong, Jia, Zhongjun. Stable isotope probing of active methane oxidizers in rice field soils from cold regions. BIOLOGY AND FERTILITY OF SOILS[J]. 2019, 第 4 作者55(3): 243-250, http://dx.doi.org/10.1007/s00374-018-01334-7.
[19] Shiau, YoJin, Cai, Yuanfeng, Jia, Zhongjun, Chen, ChiLing, Chiu, ChihYu. Phylogenetically distinct methanotrophs modulate methane oxidation in rice paddies across Taiwan. SOIL BIOLOGY & BIOCHEMISTRY[J]. 2018, 第 2 作者124: 59-69, http://dx.doi.org/10.1016/j.soilbio.2018.05.025.
[20] Shi, Limei, Huang, Yaxin, Zhang, Min, Shi, Xiaoli, Cai, Yuanfeng, Gao, Shengling, Tang, Xiangming, Chen, Feizhou, Lu, Yaping, Kong, Fanxiang. Large buoyant particles dominated by cyanobacterial colonies harbor distinct bacterial communities from small suspended particles and free-living bacteria in the water column. MICROBIOLOGYOPEN[J]. 2018, 第 5 作者7(6): https://www.webofscience.com/wos/woscc/full-record/WOS:000453616500008.
[21] Li, Zengqiang, Zhao, Bingzi, Olk, Daniel C, Jia, Zhongjun, Mao, Jingdong, Cai, Yuanfeng, Zhang, Jiabao. Contributions of residue-C and -N to plant growth and soil organic matter pools under planted and unplanted conditions. SOIL BIOLOGY & BIOCHEMISTRY[J]. 2018, 第 6 作者120: 91-104, http://dx.doi.org/10.1016/j.soilbio.2018.02.005.
[22] Shiau, YoJin, Cai, Yuanfeng, Lin, YuTe, Jia, Zhongjun, Chiu, ChihYu. Community Structure of Active Aerobic Methanotrophs in Red Mangrove (Kandelia obovata) Soils Under Different Frequency of Tides. MICROBIAL ECOLOGY[J]. 2018, 第 2 作者75(3): 761-770, http://dx.doi.org/10.1007/s00248-017-1080-1.
[23] 贾仲君, 蔡元锋, 贠娟莉, 杜文斌. 单细胞、显微计数和高通量测序典型水稻土微生物组的技术比较. 微生物学报[J]. 2017, 第 2 作者57(6): 899-919, 
[24] 施丽梅, 蔡元锋, 孔繁翔, 于洋. 水华衰亡过程中微囊藻群体胶鞘结构及其元素组成的变化. 湖泊科学[J]. 2016, 第 2 作者28(5): 944-950, http://www.jlakes.org/ch/reader/view_abstract.aspx?file_no=20160503&flag=1.
[25] Yuanfeng Cai, Yan Zheng, Paul L E Bodelier, Ralf Conrad, Zhongjun Jia. Conventional methanotrophs are responsible for atmospheric methane oxidation in paddy soils. NATURE COMMUNICATIONS[J]. 2016, 第 1 作者7(1): https://doaj.org/article/082cfc8e1c2c46baa60ffd392e948392.
[26] 蔡元锋, 吴宇澄, 王书伟, 颜晓元, 朱永官, 贾仲君. 典型淹水稻田土壤微生物群落的基因转录活性及其主要生理代谢过程. 微生物学报[J]. 2014, 第 1 作者54(9): 1033-1044, https://actamicro.ijournals.cn/actamicrocn/article/abstract/201409-8?st=article_issue.
[27] 蔡元锋, 贾仲君. 土壤大气甲烷氧化菌研究进展. 微生物学报[J]. 2014, 第 1 作者54(8): 841-853, https://actamicro.ijournals.cn/actamicrocn/article/abstract/201408-1?st=article_issue.
[28] 蔡元锋, 贾仲君. 基于新一代高通量测序的环境微生物转录组学研究进展. 生物多样性[J]. 2013, 第 1 作者21(4): 401-410, https://www.biodiversity-science.net/CN/10.3724/SP.J.1003.2013.10031.
[29] 刘姝, 孔繁翔, 蔡元锋, 阳振, 王济奎, 史小丽. 巢湖四条入湖河流硝态氮污染来源的氮稳定同位素解析. 湖泊科学[J]. 2012, 第 3 作者24(6): 952-956, http://lib.cqvip.com/Qikan/Article/Detail?id=43928616.
[30] Shi, Limei, Cai, Yuanfeng, Kong, Fanxiang, Yu, Yang. Specific association between bacteria and buoyant Microcystis colonies compared with other bulk bacterial communities in the eutrophic Lake Taihu, China. ENVIRONMENTAL MICROBIOLOGY REPORTS[J]. 2012, 第 2 作者4(6): 669-678, http://159.226.73.51/handle/332005/11763.
[31] Shi, Limei, Cai, Yuanfeng, Kong, Fanxiang, Yu, Yang. Changes in abundance and community structure of bacteria associated with buoyant Microcystis colonies during the decline of cyanobacterial bloom (autumn-winter transition). ANNALES DE LIMNOLOGIE-INTERNATIONAL JOURNAL OF LIMNOLOGY[J]. 2011, 第 2 作者47(4): 355-362, https://www.webofscience.com/wos/woscc/full-record/WOS:000301281600005.
[32] Shi, Limei, Cai, Yuanfeng, Chen, Zhuting, Zhou, Yawei, Li, Pengfu, Kong, Fanxiang. Diversity and abundance of aerobic anoxygenic phototrophic bacteria in two cyanobacterial bloom-forming lakes in China. ANNALES DE LIMNOLOGIE-INTERNATIONAL JOURNAL OF LIMNOLOGY[J]. 2010, 第 2 作者46(4): 233-239, http://159.226.73.51/handle/332005/10769.
[33] 施丽梅, 蔡元锋, 杨华林, 李朋富, 孔繁翔, 孔令东. 太湖梅梁湾水华微囊藻基因型组成和产毒微囊藻丰度的变化. 湖泊科学[J]. 2009, 第 2 作者21(6): 801-805, http://lib.cqvip.com/Qikan/Article/Detail?id=32106790.
[34] 蔡元锋, 施丽梅, 李朋富, 邢鹏, 于洋, 孔繁翔. 与微囊藻胞外多糖降解相关的微生物菌群分析. 湖泊科学[J]. 2009, 第 1 作者369-374, http://lib.cqvip.com/Qikan/Article/Detail?id=30267925.

（1） 中国土壤微生物组, 浙江大学出版社, 2021-12, 第 其他 作者
（2） 土壤微生物, 高等教育出版社, 2023-07, 第 其他 作者

   

（ 1 ） 土壤健康的沃土生物定向培育模式, 参与, 中国科学院计划, 2021-07--2026-06
（ 2 ） 草原大气甲烷氧化菌USCγ类群的空间分布格局及代谢 活性调控机制, 负责人, 国家任务, 2023-01--2026-12
（ 3 ） 盐碱土障碍消减的土壤-微生物-动物-作物跨域协同调控技术, 参与, 国家任务, 2022-11--2027-10
（ 4 ） 黑土区盐碱稻田土壤健康保育的生物调控技术, 负责人, 国家任务, 2022-11--2026-12

（1）土壤微生物宏转录分析方法及应用   第十七届中国青年土壤科学工作者暨第十二届中国青年植物营养与肥料科学工作者学术会议   2018-10-18