基本信息
卜德超  男  硕导  中国科学院计算技术研究所
电子邮件: budechao@ict.ac.cn
通信地址: 科学院南路6号
邮政编码:

招生信息

   
招生专业
081202-计算机软件与理论
081203-计算机应用技术
0812J3-生物信息学
招生方向
医疗多模态人工智能
肿瘤智能决策

教育背景

2011-09--2015-06   中国科学院计算技术研究所   博士
2009-09--2011-06   中国科学院计算技术研究所   硕士
2005-09--2009-07   山东大学   学士

工作经历

   
工作简历
2015-07~现在, 中国科学院计算技术研究所, 任职
社会兼职
2022-02-01-今,Frontiers in Bioengineering and Biotechnology, Review Editor
2021-10-01-2023-12-31,中华中医学会感染病分会, 第六届委员会青年委员
2021-02-01-今,Frontiers in Genetics, Review Editor
2020-12-22-2021-12-31,中国抗癌协会肿瘤标志专业委员会, 肿瘤多学科诊断(MDD)协作组委员

专利与奖励

   
专利成果
[1] 任菲, 罗坚诚, 刘志勇, 刘玉东, 张弘, 卜德超. 基于病理图像的TMB分类方法、系统及TMB分析装置. CN: CN110866893B, 2021-04-06.

出版信息

   
发表论文
[1] Zhang, Yuwei, Bu, Dechao, Huo, Peipei, Wang, Zhihao, Rong, Hao, Li, Yanguo, Liu, Jingjia, Ye, Meng, Wu, Yang, Jiang, Zheng, Liao, Qi, Zhao, Yi. ncFANs v2.0: an integrative platform for functional annotation of non-coding RNAs. NUCLEIC ACIDS RESEARCH[J]. 2021, 49(W1): W459-W468, http://dx.doi.org/10.1093/nar/gkab435.
[2] Bu, Dechao, Luo, Haitao, Huo, Peipei, Wang, Zhihao, Zhang, Shan, He, Zihao, Wu, Yang, Zhao, Lianhe, Liu, Jingjia, Guo, Jincheng, Fang, Shuangsang, Cao, Wanchen, Yi, Lan, Zhao, Yi, Kong, Lei. KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis. NUCLEIC ACIDS RESEARCH[J]. 2021, 49(W1): W317-W325, http://dx.doi.org/10.1093/nar/gkab447.
[3] Ning, Junya, Ye, Yingnan, Bu, Dechao, Zhao, Gang, Song, Tianqiang, Liu, Pengpeng, Yu, Wenwen, Wang, Hailong, Li, Hui, Ren, Xiubao, Ying, Guoguang, Zhao, Yi, Yu, Jinpu. Imbalance of TGF-beta 1/BMP-7 pathways induced by M2-polarized macrophages promotes hepatocellular carcinoma aggressiveness. MOLECULAR THERAPY[J]. 2021, 29(6): 2067-2087, http://dx.doi.org/10.1016/j.ymthe.2021.02.016.
[4] Fang, ShuangSang, Dong, Lei, Liu, Liu, Guo, JinCheng, Zhao, LianHe, Zhang, JiaYuan, Bu, DeChao, Liu, XinKui, Huo, PeiPei, Cao, WanChen, Dong, QiongYe, Wu, JiaRui, Zeng, Xiaoxi, Wu, Yang, Zhao, Yi. HERB: a high-throughput experiment- and reference-guided database of traditional Chinese medicine. NUCLEIC ACIDS RESEARCH[J]. 2021, 49(D1): D1197-D1206, http://dx.doi.org/10.1093/nar/gkaa1063.
[5] Zhao, Lianhe, Wang, Jiajia, Li, Yanyan, Song, Tingrui, Wu, Yang, Fang, Shuangsang, Bu, Dechao, Li, Hui, Sun, Liang, Pei, Dong, Zheng, Yu, Huang, Jianqin, Xu, Mingqing, Chen, Runsheng, Zhao, Yi, He, Shunmin. NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants. NUCLEIC ACIDS RESEARCH[J]. 2021, 49(D1): D165-D171, http://dx.doi.org/10.1093/nar/gkaa1046.
[6] Haitao Luo, Dechao Bu, Lijuan Shao, Yang Li, Liang Sun, Ce Wang, Jing Wang, Wei Yang, Xiaofei Yang, Jun Dong, Yi Zhao, Furong Li. Single-cell Long Non-coding RNA Landscape of T Cells in Human Cancer Immunity. Genomics, Proteomics & Bioinformatics[J]. 2021, http://dx.doi.org/10.1016/j.gpb.2021.02.006.
[7] Dechao Bu, Yan Xia, JiaYuan Zhang, Wanchen Cao, Peipei Huo, Zhihao Wang, Zihao He, Linyi Ding, Yang Wu, Shan Zhang, Kai Gao, He Yu, Tiegang Liu, Xia Ding, Xiaohong Gu, Yi Zhao. FangNet: Mining herb hidden knowledge from TCM clinical effective formulas using structure network algorithm. Computational and Structural Biotechnology Journal[J]. 2021, 19: 62-71, [8] Zhang, Junpei, Zhang, Wenting, Ji, Feiyang, Qiu, Jie, Song, Xiaobo, Bu, Dechao, Pan, Gang, Ma, Qingguo, Chen, Jiaxin, Huang, Ruimin, Chang, Yingying, Pei, Dong. A high-quality walnut genome assembly reveals extensive gene expression divergences after whole-genome duplication. PLANT BIOTECHNOLOGY JOURNALnull. 2020, 18(9): 1848-1850, http://dx.doi.org/10.1111/pbi.13350.
[9] 韩自强, 卜德超, 张策, 吴桂鑫, 邹玉宝, 王水云, 宋雷, 赵屹, 王继征. 肥厚型心肌病可变剪接图谱分析. 中国分子心脏病学杂志. 2020, 20(1): 3249-3254, http://lib.cqvip.com/Qikan/Article/Detail?id=7101502439.
[10] Ma, Qingguo, Bu, Dechao, Zhang, Junpei, Wu, Yang, Pei, Dong. The Transcriptome Landscape of Walnut Interspecies Hybrid (Juglans hindsii x Juglans regia) and Regulation of Cambial Activity in Relation to Grafting. FRONTIERS IN GENETICS[J]. 2019, 10: https://www.webofscience.com/wos/woscc/full-record/WOS:000472535600001.
[11] Li, Lin, Bu, Dechao, Zhao, Yi. CircRNAwrap - a flexible pipeline for circRNA identification, transcript prediction, and abundance estimation. FEBS LETTERS[J]. 2019, 593(11): 1179-1189, https://www.webofscience.com/wos/woscc/full-record/WOS:000470956700005.
[12] Wu, Yang, Zhang, Feilong, Yang, Kuo, Fang, Shuangsang, Bu, Dechao, Li, Hui, Sun, Liang, Hu, Hairuo, Gao, Kuo, Wang, Wei, Zhou, Xuezhong, Zhao, Yi, Chen, Jianxin. SymMap: an integrative database of traditional Chinese medicine enhanced by symptom mapping. NUCLEIC ACIDS RESEARCH[J]. 2019, 47(D1): D1110-D1117, https://www.webofscience.com/wos/woscc/full-record/WOS:000462587400152.
[13] Luo, Haitao, Bu, Dechao, Sun, Liang, Fang, Shuangsang, Liu, Zhiyong, Zhao, Yi. Identification and function annotation of long intervening noncoding RNAs. BRIEFINGS IN BIOINFORMATICS[J]. 2017, 18(5): 789-797, https://www.webofscience.com/wos/woscc/full-record/WOS:000411516400008.
[14] Wang, Renzhi, Yang, Yakun, Sheng, Miaomiao, Bu, Dechao, Huang, Fengming, Liu, Xiaohai, Zhou, Cuiqi, Dai, Congxin, Sun, Bowen, Zhu, Jindong, Qiao, Yi, Yao, Yong, Zhu, Huijuan, Lu, Lin, Pan, Hui, Feng, Ming, Deng, Kan, Xing, Bing, Lian, Wei, Zhao, Yi, Jiang, Chengyu. Phenotype-Genotype Association Analysis of ACTH-Secreting Pituitary Adenoma and Its Molecular Link to Patient Osteoporosis. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES[J]. 2016, 17(10): https://doaj.org/article/d4aaf1cc955a4c27a7fb296a6ae60663.
[15] Zhao, Yi, Li, Hui, Fang, Shuangsang, Kang, Yue, Wu, Wei, Hao, Yajing, Li, Ziyang, Bu, Dechao, Sun, Ninghui, Zhang, Michael Q, Chen, Runsheng. NONCODE 2016: an informative and valuable data source of long non-coding RNAs. NUCLEIC ACIDS RESEARCH[J]. 2016, 44(D1): D203-D208, https://www.webofscience.com/wos/woscc/full-record/WOS:000371261700027.
[16] 卜德超, 罗海涛, 焦飞, 方双桑, 谭程夫, 刘志勇, 赵屹. 哺乳动物长链非编码RNA的进化注释. 中国科学. 生命科学[J]. 2016, 46(2): 167-177, [17] Bu DeChao, Luo HaiTao, Jiao Fei, Fang ShuangSang, Tan ChengFu, Liu ZhiYong, Zhao Yi. Evolutionary annotation of conserved long non-coding RNAs in major mammalian species. SCIENCE CHINA-LIFE SCIENCES[J]. 2015, 58(8): 787-798, https://www.webofscience.com/wos/woscc/full-record/WOS:000359146800008.
[18] 卜德超. 基于高通量数据的长非编码RNA鉴定和进化的算法研究. 2015, [19] 赵屹, 卜德超. 当生物医学遇上大数据. 北大商业评论. 2015, 74-79, http://lib.cqvip.com/Qikan/Article/Detail?id=664365125.
[20] Yang, Yakun, Sheng, Miaomiao, Huang, Fengming, Bu, Dechao, Liu, Xiaohai, Yao, Yong, Dai, Congxin, Sun, Bowen, Zhu, Jindong, Jiao, Yonghui, Wei, Zhenqing, Zhu, Huijuan, Lu, Lin, Zhao, Yi, Jiang, Chengyu, Wang, Renzhi. Downregulation of Insulin-like growth factor binding protein 6 is associated with ACTH-secreting pituitary adenoma growth. PITUITARY[J]. 2014, 17(6): 505-513, https://www.webofscience.com/wos/woscc/full-record/WOS:000346963100003.
[21] 陈润生. NONCODEv4: exploring the world of long non-coding RNA genes. NUCLEIC ACIDS RESEARCH[J]. 2014, 42(30): D98-D103, https://www.webofscience.com/wos/woscc/full-record/WOS:000331139800016.
[22] 陈润生. Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts. NUCLEIC ACIDS RESEARCH[J]. 2013, 41(17): e166-e166, [23] 陈润生. Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts. NUCLEIC ACIDS RESEARCH[J]. 2013, 41(17): e166-e166, [24] Luo, Haitao, Sun, Silong, Li, Ping, Bu, Dechao, Cao, Haiming, Zhao, Yi. Comprehensive Characterization of 10,571 Mouse Large Intergenic Noncoding RNAs from Whole Transcriptome Sequencing. PLOS ONE[J]. 2013, 8(8): https://doaj.org/article/c4f72f03442943a6b0cd00606eb2e56b.
[25] Zhang Kun, Wang LeHeng, Chi Hao, Bu DeChao, Yuan ZuoFei, Liu Chao, Fan ShengBo, Chen HaiFeng, Zeng WenFeng, Luo HaiTao, Sun RuiXiang, He SiMin, Xie Lu, Zhao Yi. Proteogenomics: Improving Genomes Annotation by Proteomics. PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS[J]. 2013, 40(4): 297-308, https://www.webofscience.com/wos/woscc/full-record/WOS:000318059500001.
[26] Sun Liang, Luo HaiTao, Liao Qi, Bu DeChao, Zhao GuoGuang, Liu ChangNing, Liu YuanNing, Zhao Yi. Systematic study of human long intergenic non-coding RNAs and their impact on cancer. SCIENCE CHINA-LIFE SCIENCES[J]. 2013, 56(4): 324-334, https://www.webofscience.com/wos/woscc/full-record/WOS:000317610200005.
[27] Zhang Kun, Wang LeHeng, Chi Hao, Bu DeChao, Yuan ZuoFei, Liu Chao, Fan ShengBo, Chen HaiFeng, Zeng WenFeng, Luo HaiTao, Sun RuiXiang, He SiMin, Xie Lu, Zhao Yi. Proteogenomics: Improving Genomes Annotation by Proteomics. PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS[J]. 2013, 40(4): 297-308, https://www.webofscience.com/wos/woscc/full-record/WOS:000318059500001.
[28] 赵国光, 焦飞, 廖奇, 罗海涛, 李慧, 孙亮, 卜德超, 余鲲涛, 赵屹, 陈润生. 基于转录组测序在人类全基因组内鉴定与癌症相关的polyadenylation和non-polyadenylation RNA. 中国科学. 生命科学[J]. 2013, 43(5): 376-386, [29] 陈润生. Genome-wide identification of cancer-related polyadenylated and non-polyadenylated RNAs in human breast and lung cell lines. SCIENCE CHINA-LIFE SCIENCES[J]. 2013, 56(38): 503-512, http://www.irgrid.ac.cn/handle/1471x/756539.
[30] 陈润生. Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks. NUCLEIC ACIDS RESEARCH[J]. 2013, 41(41): http://www.irgrid.ac.cn/handle/1471x/756478.
[31] 陈润生. Genome-wide identification of cancer-related polyadenylated and non-polyadenylated RNAs in human breast and lung cell lines. SCIENCE CHINA-LIFE SCIENCES[J]. 2013, 56(38): 503-512, http://www.irgrid.ac.cn/handle/1471x/756539.
[32] 陈润生. CloudLCA: finding the lowest common ancestor in metagenome analysis using cloud computing. PROTEIN & CELL[J]. 2012, 3(50): 148-152, http://www.irgrid.ac.cn/handle/1471x/756738.
[33] 陈润生. NONCODE v3.0: integrative annotation of long noncoding RNAs. NUCLEIC ACIDS RESEARCH[J]. 2012, 40(51): D210-D215, http://www.irgrid.ac.cn/handle/1471x/756876.
[34] Liao, Qi, Liu, Changning, Yuan, Xiongying, Kang, Shuli, Miao, Ruoyu, Xiao, Hui, Zhao, Guoguang, Luo, Haitao, Bu, Dechao, Zhao, Haitao, Skogerbo, Geir, Wu, Zhongdao, Zhao, Yi. Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network. NUCLEIC ACIDS RESEARCH[J]. 2011, 39(9): 3864-3878, https://www.webofscience.com/wos/woscc/full-record/WOS:000290589500037.
[35] 陈润生. ncFANs: a web server for functional annotation of long non-coding RNAs. NUCLEIC ACIDS RESEARCH[J]. 2011, 39(54): W118-W124, http://www.irgrid.ac.cn/handle/1471x/757406.