基本信息
熊杰 男 博导 中国科学院水生生物研究所
电子邮件： xiongjie@ihb.ac.cn
通信地址： 湖北省武汉市东湖南路7号
邮政编码： 430072
电子邮件： xiongjie@ihb.ac.cn
通信地址： 湖北省武汉市东湖南路7号
邮政编码： 430072
研究领域
原生动物进化基因组学
招生信息
在读硕士3人
招生专业
071007-遗传学
071004-水生生物学
071004-水生生物学
招生方向
原生动物基因组学
教育背景
2007-09--2012-01 中国科学院水生生物研究所 研究生/理学博士
2003-09--2007-06 南京农业大学 本科/农学学士
2003-09--2007-06 南京农业大学 本科/农学学士
学历
2003/09-2007/06，南京农业大学，水产养殖学，农学学士;
2007/09-2011/11, 中国科学院水生生物研究所，水生生物学，理学博士;工作经历
1. 2012/01-2015/12，中国科学院水生生物研究所，助理研究员;
2. 2014/08-2015/08，美国密歇根大学，博士后；
3. 2015/12至今，中国科学院水生生物研究所，副研究员；
工作简历
2015-11~现在, 中国科学院水生生物研究所, 副研究员
2014-08~2015-08,美国密歇根大学安娜堡校区, 博士后
2012-03~2015-11,中国科学院水生生物研究所, 助理研究员
2014-08~2015-08,美国密歇根大学安娜堡校区, 博士后
2012-03~2015-11,中国科学院水生生物研究所, 助理研究员
社会兼职
2015-08-24-2017-12-31,中国动物学会原生动物学分会副秘书长, 副秘书长
专利与奖励
奖励信息
（1） 中国动物学会原生动物学分会青年科技奖, 其他, 2017
（2） 青年科技奖, 一等奖, 研究所（学校）, 2016
（3） 湖北省优秀博士论文奖, 一等奖, 省级, 2013
（2） 青年科技奖, 一等奖, 研究所（学校）, 2016
（3） 湖北省优秀博士论文奖, 一等奖, 省级, 2013
专利成果
（ 1 ） 来源于四膜虫的TpyArsM蛋白及其编码基因和应用, 发明, 2015, 第 5 作者, 专利号: CN201410001904.6
出版信息
发表论文
[1] Proceedings of the National Academy of Sciences. 2024, 第 4 作者
[2] Nature Communications. 2024, 通讯作者
[3] NUCLEIC ACIDS RESEARCH. 2024, 第 1 作者
[4] International Journal of Molecular Sciences. 2023, 通讯作者
[5] Science Advances. 2023, 通讯作者
[6] Molecular Ecology Resources. 2023, 通讯作者
[7] Wang, Guangying, Wang, Su, Chai, Xiaocui, Zhang, Jing, Yang, Wentao, Jiang, Chuanqi, Chen, Kai, Miao, Wei, Xiong, Jie. A strategy for complete telomere-to-telomere assembly of ciliate macronuclear genome using ultra-high coverage Nanopore data. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL[J]. 2021, 第 9 作者 通讯作者 19: 1928-1932, https://doaj.org/article/7831b5e99b814fe6b0da7acb5017cde7.
[8] Wei Wei, Chuanqi Jiang, Xiaocui Chai, Juyuan Zhang, ChengCai Zhang, Wei Miao, Jie Xiong. RNA Interference by Cyanobacterial Feeding Demonstrates the SCSG1 Gene Is Essential for Ciliogenesis during Oral Apparatus Regeneration in Stentor. MICROORGANISMS[J]. 2021, 第 7 作者9(176): https://doaj.org/article/3781424e319547e4b1ee4153e0085495.
[9] Wang, Guangying, Fu, Lu, Xiong, Jie, Mochizuki, Kazufumi, Fu, Yunxin, Miao, Wei. Identification and Characterization of Base-Substitution Mutations in the Macronuclear Genome of the Ciliate Tetrahymena thermophila. GENOME BIOLOGY AND EVOLUTION[J]. 2021, 第 3 作者 通讯作者 13(1): http://dx.doi.org/10.1093/gbe/evaa232.
[10] Jiang, Chuanqi, Liu, Bin, Zhang, Jing, Gu, Siyu, Liu, Zhencheng, Wang, Xueyan, Chen, Kai, Xiong, Jie, Lu, Yishan, Miao, Wei. Diversity and Seasonality Dynamics of Ciliate Communities in Four Estuaries of Shenzhen, China (South China Sea). JOURNAL OF MARINE SCIENCE AND ENGINEERING[J]. 2021, 第 8 作者9(3): https://doaj.org/article/97c5b7bc4d4949169797a462ee333555.
[11] Maa, Yang, Yen, Guanxiong, Han, Xiaojie, Zhang, Jing, Xiong, Jie, Miao, Wei. Sexual cell cycle initiation is regulated by CDK19 and CYC9 in Tetrahymena thermophila. JOURNAL OF CELL SCIENCE[J]. 2020, 第 5 作者133(6): http://dx.doi.org/10.1242/jcs.235721.
[12] Zhang, Jing, Chen, Kai, Jiang, Chuanqi, Yang, Wentao, Gu, Siyu, Wang, Guangying, Lu, Yishan, Miao, Wei, Xiong, Jie. Bacteria-Derived Hemolysis-Related Genes Widely Exist in Scuticociliates. MICROORGANISMS[J]. 2020, 第 9 作者 通讯作者 8(11): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7709021/.
[13] Wang, Guangying, Chen, Kai, Zhang, Jing, Deng, Shanjun, Xiong, Jie, He, Xionglei, Fu, Yunxin, Miao, Wei. Drivers of Mating Type Composition in Tetrahymena thermophila. GENOME BIOLOGY AND EVOLUTION[J]. 2020, 第 5 作者12(12): 2328-2343, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7846192/.
[14] Wei, Wei, Jiang, Chuanqi, Yang, Wentao, Miao, Wei, Xiong, Jie. Proteomic identification and expression of oral apparatus constituents in cell regeneration of giant ciliate Stentor coeruleus (strain WHEL). GENE[J]. 2020, 第 5 作者 通讯作者 743: http://dx.doi.org/10.1016/j.gene.2020.144624.
[15] Feng, JinMei, Jiang, ChuanQi, Sun, ZongYi, Hua, CongJie, Wen, JianFan, Miao, Wei, Xiong, Jie. Single-cell transcriptome sequencing of rumen ciliates provides insight into their molecular adaptations to the anaerobic and carbohydrate-rich rumen microenvironment. MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2020, 第 7 作者 通讯作者 143(1): http://dx.doi.org/10.1016/j.ympev.2019.106687.
[16] Yang, Wentao, Jiang, Chuanqi, Zhu, Ying, Chen, Kai, Wang, Guangying, Yuan, Dongxia, Miao, Wei, Xiong, Jie. Tetrahymena Comparative Genomics Database (TCGD): a community resource for Tetrahymena. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION[J]. 2019, 第 8 作者 通讯作者 2019(1): http://dx.doi.org/10.1093/database/baz029.
[17] Zhao, Xiaolu, Xiong, Jie, Mao, Fengbiao, Sheng, Yalan, Chen, Xiao, Feng, Lifang, Dui, Wen, Yang, Wentao, Kapusta, Aurelie, Feschotte, Cedric, Coyne, Robert S, Miao, Wei, Gao, Shan, Liu, Yifan. RNAi-dependent Polycomb repression controls transposable elements in Tetrahymena. GENES & DEVELOPMENT[J]. 2019, 第 2 作者33(5-6): 348-364, https://www.webofscience.com/wos/woscc/full-record/WOS:000460112800009.
[18] Chen, Kai, Wang, Guangying, Xiong, Jie, Jiang, Chuanqi, Miao, Wei. Exploration of Genetic Variations through Single-cell Whole-genome Sequencing in the Model Ciliate Tetrahymena thermophila. JOURNAL OF EUKARYOTIC MICROBIOLOGY[J]. 2019, 第 3 作者66(6): 954-965, http://dx.doi.org/10.1111/jeu.12746.
[19] Jie Xiong, Wentao Yang, Kai Chen, Chuanqi Jiang, Yang Ma, Xiaocui Chai, Guanxiong Yan, Guangying Wang, Dongxia Yuan, Yifan Liu, Shelby L Bidwell, Nikhat Zafar, Michalis Hadjithomas, Vivek Krishnakumar, Robert S Coyne, Eduardo Orias, Wei Miao. Hidden genomic evolution in a morphospecies-The landscape of rapidly evolving genes in Tetrahymena. PLOS BIOLOGY[J]. 2019, 第 1 作者17(6): https://doaj.org/article/f400c8dce213444cb2a01bfe2025ac91.
[20] Xiong Jie. xploration of Genetic Variations through Single‐cell Whole‐genome Sequencing in the Model Ciliate Tetrahymena thermophila. Journal of Eukaryotic Microbiology. 2019, 第 1 作者
[21] Jiang, ChuanQi, Wang, GuangYing, Xiong, Jie, Yang, WenTao, Sun, ZongYi, Feng, JinMei, Warren, Alan, Miao, Wei. Insights into the origin and evolution of Peritrichia (Oligohymenophorea, Ciliophora) based on analyses of morphology and phylogenomics. MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2019, 第 3 作者132(1): 25-35, http://dx.doi.org/10.1016/j.ympev.2018.11.018.
[22] 熊杰, 陈建平, 陈晓光, 陈瑛, 冯耀宇, 高凤, 高珊, 顾福康, 黄兵, 梁爱华, 龙红岸, 赖德华, 伦照荣, 缪炜, 倪兵, 邱子健, 邵晨, 汪建国, 文建凡, 徐奎栋, 余育和, 张龙现, 张西臣, 赵元莙, 宋微波. 进展中的原生动物学研究：热点领域与新格局. 中国科学:生命科学[J]. 2019, 第 1 作者49(10): 1301, https://www.sciengine.com/doi/10.1360/SSV-2019-0127.
[23] Wei, Wei, Chen, Kai, Miao, Wei, Yang, Wentao, Xiong, Jie. Pseudocohnilembus persalinus genome database - the first genome database of facultative scuticociliatosis pathogens. BMC GENOMICS[J]. 2018, 第 5 作者 通讯作者 19(1): https://doaj.org/article/148a5360ad334dc0803bac4b7d712e12.
[24] Wang, Ruanlin, Miao, Wei, Wang, Wei, Xiong, Jie, Liang, Aihua. EOGD: the Euplotes octocarinatus genome database. BMC GENOMICS[J]. 2018, 第 4 作者 通讯作者 19(1): https://doaj.org/article/2e527cd49fa249a2a57d50cd256bfc4a.
[25] Zhang, Jing, Yan, Guanxiong, Tian, Miao, Ma, Yang, Xiong, Jie, Miao, Wei. A DP-like transcription factor protein interacts with E2fl1 to regulate meiosis in Tetrahymena thermophila. CELL CYCLE[J]. 2018, 第 5 作者17(5): 634-642, http://www.irgrid.ac.cn/handle/1471x/1760403.
[26] Feng, Lifang, Wang, Guangying, Hamilton, Eileen P, Xiong, Jie, Yan, Guanxiong, Chen, Kai, Chen, Xiao, Dui, Wen, Plemens, Amber, Khadr, Lara, Dhanekula, Arjune, Juma, Mina, Hung Quang Dang, Kapler, Geoffrey M, Orias, Eduardo, Miao, Wei, Liu, Yifan. A germline-limited piggyBac transposase gene is required for precise excision in Tetrahymena genome rearrangement. NUCLEIC ACIDS RESEARCH[J]. 2017, 第 4 作者45(16): 9481-9502, http://www.irgrid.ac.cn/handle/1471x/1759909.
[27] Wang, Ruanlin, Xiong, Jie, Wang, Wei, Miao, Wei, Liang, Aihua. High frequency of+1 programmed ribosomal frameshifting in Euplotes octocarinatus. SCIENTIFIC REPORTS[J]. 2016, 第 2 作者6: http://www.irgrid.ac.cn/handle/1471x/1085396.
[28] Mu, Weijie, Wang, Qi, Bourland, William A, Jiang, Chuanqi, Yuan, Dongxia, Pan, Xuming, Miao, Wei, Chen, Ying, Xiong, Jie. Epidermal growth factor-induced stimulation of proliferation and gene expression changes in the hypotrichous ciliate, Stylonychia lemnae. GENE[J]. 2016, 第 9 作者 通讯作者 592(1): 186-192, http://dx.doi.org/10.1016/j.gene.2016.08.004.
[29] 鲁义善, 杨文涛, 程俊, 袁冬霞, 缪炜, 熊杰. 一株养殖大菱鲆体表溶血性蜡状芽胞杆菌的分离鉴定及基因组分析. 基因组学与应用生物学[J]. 2016, 第 6 作者35(11): 3094-3104, http://lib.cqvip.com/Qikan/Article/Detail?id=670744689.
[30] Xiong, Jie, Gao, Shan, Dui, Wen, Yang, Wentao, Chen, Xiao, Taverna, Sean D, Pearlman, Ronald E, Ashlock, Wendy, Miao, Wei, Liu, Yifan. Dissecting relative contributions of cis- and trans-determinants to nucleosome distribution by comparing Tetrahymena macronuclear and micronuclear chromatin. NUCLEIC ACIDS RESEARCH[J]. 2016, 第 1 作者44(21): 10091-10105, https://www.webofscience.com/wos/woscc/full-record/WOS:000393979400012.
[31] 张晶, 熊杰, 袁冬霞, 田苗, 闫冠雄, 缪炜. 嗜热四膜虫SPO11基因缺陷型细胞株的基因表达变化分析. 基因组学与应用生物学[J]. 2016, 第 2 作者350-357, http://ir.ihb.ac.cn/handle/342005/38734.
[32] 杨文涛, 王光营, 田苗, 袁冬霞, 缪炜, 曾宏辉, 熊杰. 嗜热四膜虫功能基因组数据库. 中国科学数据:中英文网络版[J]. 2016, 第 7 作者39-46, http://lib.cqvip.com/Qikan/Article/Detail?id=7101584579.
[33] 宁应之, 陈凯, 张晶, 姜传奇, 熊杰, 缪炜. 八种纤毛虫减数分裂基因的分子进化研究. 动物学杂志[J]. 2016, 第 5 作者51(2): 301-309, http://dwxzz.ioz.ac.cn/ch/reader/view_abstract.aspx?file_no=15247&flag=1.
[34] Yan, GuanXiong, Dang, Huai, Tian, Miao, Zhang, Jing, Shodhan, Anura, Ning, YingZhi, Xiong, Jie, Miao, Wei. Cyc17, a meiosis-specific cyclin, is essential for anaphase initiation and chromosome segregation in Tetrahymena thermophila. CELL CYCLE[J]. 2016, 第 7 作者15(14): 1855-1864, https://dx.doi.org/10.1080/15384101.2016.1188238.
[35] 张晶, 闫冠雄, 田苗, 二袁冬霞, 熊杰, 缪炜. 嗜热四膜虫SP011基因缺陷型细胞株的基因表达变化分析. 基因组学与应用生物学[J]. 2016, 第 5 作者35(2): 350-357, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=5650248&detailType=1.
[36] 张晶, 杨文涛, 熊杰, 曾宏辉, 缪炜, 袁冬霞, 田苗, 闫冠雄. 四膜虫功能基因组数据库增量更新2016：生活史和减数分裂转录组及磷酸化蛋白组资源建设. 基因组学与应用生物学[J]. 2016, 第 3 作者35(6): 1443-1450, http://www.irgrid.ac.cn/handle/1471x/1759993.
[37] Hamilton, Eileen P, Kapusta, Aurelie, Huvos, Piroska E, Bidwell, Shelby L, Zafar, Nikhat, Tang, Haibao, Hadjithomas, Michalis, Krishnakumar, Vivek, Badger, Jonathan H, Caler, Elisabet V, Russ, Carsten, Zeng, Qiandong, Fan, Lin, Levin, Joshua Z, Shea, Terrance, Young, Sarah K, Hegarty, Ryan, Daza, Riza, Gujja, Sharvari, Wortman, Jennifer R, Birren, Bruce W, Nusbaum, Chad, Thomas, Jainy, Carey, Clayton M, Pritham, Ellen J, Feschotte, Cedric, Noto, Tomoko, Mochizuki, Kazufumi, Papazyan, Romeo, Taverna, Sean D, Dear, Paul H, CassidyHanley, Donna M, Xiong, Jie, Miao, Wei, Orias, Eduardo, Coyne, Robert S. Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome. ELIFE[J]. 2016, 第 33 作者5(1): https://doaj.org/article/5b8a3b25eb90453aad49d3598e13d79e.
[38] Feng, JinMei, Jiang, ChuanQi, Warren, Alan, Tian, Miao, Cheng, Jun, Liu, GuangLong, Xiong, Jie, Miao, Wei. Phylogenomic analyses reveal subclass Scuticociliatia as the sister group of subclass Hymenostomatia within class Oligohymenophorea. MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2015, 第 7 作者90: 104-111, http://dx.doi.org/10.1016/j.ympev.2015.05.007.
[39] 宁应之, 赵康平, 熊杰, 袁冬霞, 缪炜. 嗜热四膜虫可变剪接基因鉴定及功能分析. 基因组学与应用生物学[J]. 2015, 第 3 作者34(1): 17-27, http://lib.cqvip.com/Qikan/Article/Detail?id=665888650.
[40] Xiong, Jie, Feng, Jinmei, Yuan, Dongxia, Zhou, Jun, Miao, Wei. Tracing the structural evolution of eukaryotic ATP binding cassette transporter superfamily. SCIENTIFIC REPORTS[J]. 2015, 第 1 作者5: http://www.irgrid.ac.cn/handle/1471x/994830.
[41] Xiong, Jie, Wang, Guangying, Cheng, Jun, Tian, Miao, Pan, Xuming, Warren, Alan, Jiang, Chuanqi, Yuan, Dongxia, Miao, Wei. Genome of the facultative scuticociliatosis pathogen Pseudocohnilembus persalinus provides insight into its virulence through horizontal gene transfer. SCIENTIFIC REPORTS[J]. 2015, 第 1 作者5: http://dx.doi.org/10.1038/srep15470.
[42] Wu, Shu, Xiong, Jie, Yu, Yuhe. Taxonomic Resolutions Based on 18S rRNA Genes: A Case Study of Subclass Copepoda. PLOS ONE[J]. 2015, 第 2 作者10(6): https://doaj.org/article/1b8447af40bc4ad8a0f67199f2a00799.
[43] Feng, JinMei, Xiong, Jie, Zhang, JinYong, Yang, YaLin, Yao, Bin, Zhou, ZhiGang, Miao, Wei. New phylogenomic and comparative analyses provide corroborating evidence that Myxozoa is Cnidaria (vol 81, pg 10, 2014). MOLECULAR PHYLOGENETICS AND EVOLUTION. 2015, 第 2 作者82(*): 343-343, http://www.irgrid.ac.cn/handle/1471x/978697.
[44] Jin-Mei Feng, Jie Xiong, Jin-Yong Zhang, Ya-Lin Yang, Bin Yao, Zhi-Gang Zhou, Wei Miao. Corrigendum to "New phylogenomic and comparative analyses provide corroborating evidence that Myxozoa is Cnidaria" Mol. Phylogenet. Evol. 81 (2014) 10–18. MOLECULAR PHYLOGENETICS AND EVOLUTION. 2015, 第 2 作者82: 343-343, http://dx.doi.org/10.1016/j.ympev.2014.10.017.
[45] Ning YingZhi, Dang Huai, Liu GuangLong, Xiong Jie, Yuan DongXia, Feng LiFang, Miao Wei. ATP-binding cassette transporter enhances tolerance to DDT in Tetrahymena. SCIENCE CHINA-LIFE SCIENCES[J]. 2015, 第 4 作者58(3): 297-304, http://www.irgrid.ac.cn/handle/1471x/978684.
[46] Yang, Yalin, Xiong, Jie, Zhou, Zhigang, Huo, Fengmin, Miao, Wei, Ran, Chao, Liu, Yuchun, Zhang, Jinyong, Feng, Jinmei, Wang, Meng, Wang, Min, Wang, Lei, Yao, Bin. The Genome of the Myxosporean Thelohanellus kitauei Shows Adaptations to Nutrient Acquisition within Its Fish Host. GENOME BIOLOGY AND EVOLUTION[J]. 2014, 第 2 作者6(12): 3182-3198, http://dx.doi.org/10.1093/gbe/evu247.
[47] Tian, Miao, Chen, Xiulan, Xiong, Qian, Xiong, Jie, Xiao, Chuanle, Ge, Feng, Yang, Fuquan, Miao, Wei. Phosphoproteomic Analysis of Protein Phosphorylation Networks in Tetrahymena thermophila, a Model Single-celled Organism. MOLECULAR & CELLULAR PROTEOMICS[J]. 2014, 第 4 作者13(2): 503-519, http://dx.doi.org/10.1074/mcp.M112.026575.
[48] Feng, JinMei, Xiong, Jie, Zhang, JinYong, Yang, YaLin, Yao, Bin, Zhou, ZhiGang, Miao, Wei. New phylogenomic and comparative analyses provide corroborating evidence that Myxozoa is Cnidaria. MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2014, 第 2 作者81: 10-18, http://dx.doi.org/10.1016/j.ympev.2014.08.016.
[49] Ye, Jun, Chang, Yue, Yan, Yu, Xiong, Jie, Xue, XiMei, Yuan, Dongxia, Sun, GuoXin, Zhu, YongGuan, Miao, Wei. Identification and characterization of the arsenite methyltransferase from a protozoan, Tetrahyrnena pyriformis. AQUATIC TOXICOLOGY[J]. 2014, 第 4 作者149(1): 50-57, http://www.irgrid.ac.cn/handle/1471x/852667.
[50] 宁应之, 党怀, 刘光龙, 熊杰, 袁冬霞, 冯立芳, 缪炜. ABC转运蛋白提升四膜虫对DDT的耐受能力. 中国科学. 生命科学[J]. 2014, 第 4 作者44(11): 1133, http://dx.doi.org/10.1360/N052014-00090.
[51] Chang, Yue, Liu, Guanglong, Guo, Lina, Liu, Hongbo, Yuan, Dongxia, Xiong, Jie, Ning, Yingzhi, Fu, Chengjie, Miao, Wei. Cd-Metallothioneins in Three Additional Tetrahymena Species: Intragenic Repeat Patterns and Induction by Metal Ions. JOURNAL OF EUKARYOTIC MICROBIOLOGY[J]. 2014, 第 6 作者61(4): 333-342, http://dx.doi.org/10.1111/jeu.12112.
[52] 袁冬霞, 冯立芳, 熊杰, 缪炜. 四膜虫rDNA表达载体的改造及用于异源基因的高效表达. 基因组学与应用生物学[J]. 2013, 第 3 作者32(4): 548-556, http://lib.cqvip.com/Qikan/Article/Detail?id=46945717.
[53] Marcella D Cervantes, Eileen P Hamilton, Jie Xiong, Michael J Lawson, Dongxia Yuan, Michalis Hadjithomas, Wei Miao, Eduardo Orias. Selecting one of several mating types through gene segment joining and deletion in Tetrahymena thermophila.. PLOS BIOLOGY[J]. 2013, 第 3 作者11(3): IR_Article.
[54] Xiong, Jie, Lu, Yuming, Feng, Jinmei, Yuan, Dongxia, Tian, Miao, Chang, Yue, Fu, Chengjie, Wang, Guangying, Zeng, Honghui, Miao, Wei. Tetrahymena Functional Genomics Database (TetraFGD): an integrated resource for Tetrahymena functional genomics. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION[J]. 2013, 第 1 作者2013(X): http://www.irgrid.ac.cn/handle/1471x/733510.
[55] Jie XiongYuming LuJinmei FengDongxia YuanMiao TianYue ChangChengjie FuGuangying WangHonghui ZengWei Miao. Tetrahymena Functional Genomics Database (TetraFGD): an integrated resource for Tetrahymena functional genomics. DATABASE[J]. 2013, 2013:
[56] Gao, Shan, Xiong, Jie, Zhang, Chunchao, Berquist, Brian R, Yang, Rendong, Zhao, Meng, Molascon, Anthony J, Kwiatkowski, Shaina Y, Yuan, Dongxia, Qin, Zhaohui, Wen, Jianfan, Kapler, Geoffrey M, Andrews, Philip C, Miao, Wei, Liu, Yifan. Impaired replication elongation in Tetrahymena mutants deficient in histone H3 Lys 27 monomethylation. GENES & DEVELOPMENT[J]. 2013, 第 2 作者27(15): 1662-1679, http://www.irgrid.ac.cn/handle/1471x/701991.
[57] Xiong, Jie, Lu, Xingyi, Zhou, Zhemin, Chang, Yue, Yuan, Dongxia, Tian, Miao, Zhou, Zhigang, Wang, Lei, Fu, Chengjie, Orias, Eduardo, Miao, Wei. Transcriptome Analysis of the Model Protozoan, Tetrahymena thermophila, Using Deep RNA Sequencing. PLOS ONE[J]. 2012, 第 1 作者 通讯作者 7(2): http://www.irgrid.ac.cn/handle/1471x/495230.
[58] Xiong, Jie, Yuan, Dongxia, Fillingham, Jeffrey S, Garg, Jyoti, Lu, Xingyi, Chang, Yue, Liu, Yifan, Fu, Chengjie, Pearlman, Ronald E, Miao, Wei. Gene Network Landscape of the Ciliate Tetrahymena thermophila. PLOS ONE[J]. 2011, 第 1 作者 通讯作者 6(5): http://dx.doi.org/10.1371/journal.pone.0020124.
[59] 畅悦, 冯立芳, 熊杰, 缪炜. 嗜热四膜虫金属硫蛋白基因MMT2和MTT4的表达规律比较与进化模式分析. 动物学研究[J]. 2011, 第 3 作者32(5): 476-484, http://lib.cqvip.com/Qikan/Article/Detail?id=39740376.
[60] XIONG Jie, LU XingYi, LU YuMing, ZENG HongHui, YUAN DongXia, FENG LiFang, CHANG Yue, Josephine BOWEN, Martin GOROVSKY, FU ChengJie, MIAO Wei. Tetrahymena Gene Expression Database (TGED):A resource of microarray data and co-expression analyses for Tetrahymena. 中国科学：生命科学英文版[J]. 2011, 第 1 作者54(1): 65-67, http://lib.cqvip.com/Qikan/Article/Detail?id=36441419.
[61] 陆星亦, 熊杰, 袁冬霞, 缪炜. 嗜热四膜虫腺苷三磷酸结合盒转运蛋白ABCC10基因的可变剪切分析. 动物学研究[J]. 2011, 第 2 作者32(6): 605,
[62] Xiong Jie, Lu XingYi, Lu YuMing, Zeng HongHui, Yuan DongXia, Feng LiFang, Chang Yue, Bowen, Josephine, Gorovsky, Martin, Fu ChengJie, Miao Wei. Tetrahymena Gene Expression Database (TGED): A resource of microarray data and co-expression analyses for Tetrahymena. SCIENCE CHINA-LIFE SCIENCES[J]. 2011, 第 1 作者54(1): 65-67, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=4143274&detailType=1.
[63] 陆星亦, 熊杰, 袁冬霞, 缪炜. 嗜热四膜虫腺苷三磷酸结合盒转运蛋白ABCCIO基因的可变剪切分析. 动物学研究[J]. 2011, 第 2 作者32(6): 605-610, http://lib.cqvip.com/Qikan/Article/Detail?id=40278879.
[64] 熊杰, 陆星亦, 陆钰明, 曾宏辉, 袁冬霞, 冯立芳, 畅悦, B Josephine, G Martin, 傅诚杰, 缪炜. 四膜虫基因表达数据库：四膜虫全基因组基因表达芯片和协同表达分析的数据资源. 中国科学：生命科学[J]. 2010, 第 1 作者1087-1089, http://lib.cqvip.com/Qikan/Article/Detail?id=36475552.
[65] Xiong, Jie, Feng, Lifang, Yuan, Dongxia, Fu, Chengjie, Miao, Wei. Genome-wide identification and evolution of ATP-binding cassette transporters in the ciliate Tetrahymena thermophila: A case of functional divergence in a multigene family. BMC EVOLUTIONARY BIOLOGY[J]. 2010, 第 1 作者10(1): http://ir.ihb.ac.cn/handle/342005/15532.
[66] Miao, Wei, Xiong, Jie, Bowen, Josephine, Wang, Wei, Liu, Yifan, Braguinets, Olga, Grigull, Jorg, Pearlman, Ronald E, Orias, Eduardo, Gorovsky, Martin A. Microarray Analyses of Gene Expression during the Tetrahymena thermophila Life Cycle. PLOS ONE[J]. 2009, 第 2 作者4(2): http://ir.ihb.ac.cn/handle/342005/14438.
[67] Fu, Chengjie, Xiong, Jie, Miao, Wei. Genome-wide identification and characterization of cytochrome P450 monooxygenase genes in the ciliate Tetrahymena thermophila. BMC GENOMICS[J]. 2009, 第 2 作者10: http://dx.doi.org/10.1186/1471-2164-10-208.
[2] Nature Communications. 2024, 通讯作者
[3] NUCLEIC ACIDS RESEARCH. 2024, 第 1 作者
[4] International Journal of Molecular Sciences. 2023, 通讯作者
[5] Science Advances. 2023, 通讯作者
[6] Molecular Ecology Resources. 2023, 通讯作者
[7] Wang, Guangying, Wang, Su, Chai, Xiaocui, Zhang, Jing, Yang, Wentao, Jiang, Chuanqi, Chen, Kai, Miao, Wei, Xiong, Jie. A strategy for complete telomere-to-telomere assembly of ciliate macronuclear genome using ultra-high coverage Nanopore data. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL[J]. 2021, 第 9 作者 通讯作者 19: 1928-1932, https://doaj.org/article/7831b5e99b814fe6b0da7acb5017cde7.
[8] Wei Wei, Chuanqi Jiang, Xiaocui Chai, Juyuan Zhang, ChengCai Zhang, Wei Miao, Jie Xiong. RNA Interference by Cyanobacterial Feeding Demonstrates the SCSG1 Gene Is Essential for Ciliogenesis during Oral Apparatus Regeneration in Stentor. MICROORGANISMS[J]. 2021, 第 7 作者9(176): https://doaj.org/article/3781424e319547e4b1ee4153e0085495.
[9] Wang, Guangying, Fu, Lu, Xiong, Jie, Mochizuki, Kazufumi, Fu, Yunxin, Miao, Wei. Identification and Characterization of Base-Substitution Mutations in the Macronuclear Genome of the Ciliate Tetrahymena thermophila. GENOME BIOLOGY AND EVOLUTION[J]. 2021, 第 3 作者 通讯作者 13(1): http://dx.doi.org/10.1093/gbe/evaa232.
[10] Jiang, Chuanqi, Liu, Bin, Zhang, Jing, Gu, Siyu, Liu, Zhencheng, Wang, Xueyan, Chen, Kai, Xiong, Jie, Lu, Yishan, Miao, Wei. Diversity and Seasonality Dynamics of Ciliate Communities in Four Estuaries of Shenzhen, China (South China Sea). JOURNAL OF MARINE SCIENCE AND ENGINEERING[J]. 2021, 第 8 作者9(3): https://doaj.org/article/97c5b7bc4d4949169797a462ee333555.
[11] Maa, Yang, Yen, Guanxiong, Han, Xiaojie, Zhang, Jing, Xiong, Jie, Miao, Wei. Sexual cell cycle initiation is regulated by CDK19 and CYC9 in Tetrahymena thermophila. JOURNAL OF CELL SCIENCE[J]. 2020, 第 5 作者133(6): http://dx.doi.org/10.1242/jcs.235721.
[12] Zhang, Jing, Chen, Kai, Jiang, Chuanqi, Yang, Wentao, Gu, Siyu, Wang, Guangying, Lu, Yishan, Miao, Wei, Xiong, Jie. Bacteria-Derived Hemolysis-Related Genes Widely Exist in Scuticociliates. MICROORGANISMS[J]. 2020, 第 9 作者 通讯作者 8(11): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7709021/.
[13] Wang, Guangying, Chen, Kai, Zhang, Jing, Deng, Shanjun, Xiong, Jie, He, Xionglei, Fu, Yunxin, Miao, Wei. Drivers of Mating Type Composition in Tetrahymena thermophila. GENOME BIOLOGY AND EVOLUTION[J]. 2020, 第 5 作者12(12): 2328-2343, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7846192/.
[14] Wei, Wei, Jiang, Chuanqi, Yang, Wentao, Miao, Wei, Xiong, Jie. Proteomic identification and expression of oral apparatus constituents in cell regeneration of giant ciliate Stentor coeruleus (strain WHEL). GENE[J]. 2020, 第 5 作者 通讯作者 743: http://dx.doi.org/10.1016/j.gene.2020.144624.
[15] Feng, JinMei, Jiang, ChuanQi, Sun, ZongYi, Hua, CongJie, Wen, JianFan, Miao, Wei, Xiong, Jie. Single-cell transcriptome sequencing of rumen ciliates provides insight into their molecular adaptations to the anaerobic and carbohydrate-rich rumen microenvironment. MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2020, 第 7 作者 通讯作者 143(1): http://dx.doi.org/10.1016/j.ympev.2019.106687.
[16] Yang, Wentao, Jiang, Chuanqi, Zhu, Ying, Chen, Kai, Wang, Guangying, Yuan, Dongxia, Miao, Wei, Xiong, Jie. Tetrahymena Comparative Genomics Database (TCGD): a community resource for Tetrahymena. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION[J]. 2019, 第 8 作者 通讯作者 2019(1): http://dx.doi.org/10.1093/database/baz029.
[17] Zhao, Xiaolu, Xiong, Jie, Mao, Fengbiao, Sheng, Yalan, Chen, Xiao, Feng, Lifang, Dui, Wen, Yang, Wentao, Kapusta, Aurelie, Feschotte, Cedric, Coyne, Robert S, Miao, Wei, Gao, Shan, Liu, Yifan. RNAi-dependent Polycomb repression controls transposable elements in Tetrahymena. GENES & DEVELOPMENT[J]. 2019, 第 2 作者33(5-6): 348-364, https://www.webofscience.com/wos/woscc/full-record/WOS:000460112800009.
[18] Chen, Kai, Wang, Guangying, Xiong, Jie, Jiang, Chuanqi, Miao, Wei. Exploration of Genetic Variations through Single-cell Whole-genome Sequencing in the Model Ciliate Tetrahymena thermophila. JOURNAL OF EUKARYOTIC MICROBIOLOGY[J]. 2019, 第 3 作者66(6): 954-965, http://dx.doi.org/10.1111/jeu.12746.
[19] Jie Xiong, Wentao Yang, Kai Chen, Chuanqi Jiang, Yang Ma, Xiaocui Chai, Guanxiong Yan, Guangying Wang, Dongxia Yuan, Yifan Liu, Shelby L Bidwell, Nikhat Zafar, Michalis Hadjithomas, Vivek Krishnakumar, Robert S Coyne, Eduardo Orias, Wei Miao. Hidden genomic evolution in a morphospecies-The landscape of rapidly evolving genes in Tetrahymena. PLOS BIOLOGY[J]. 2019, 第 1 作者17(6): https://doaj.org/article/f400c8dce213444cb2a01bfe2025ac91.
[20] Xiong Jie. xploration of Genetic Variations through Single‐cell Whole‐genome Sequencing in the Model Ciliate Tetrahymena thermophila. Journal of Eukaryotic Microbiology. 2019, 第 1 作者
[21] Jiang, ChuanQi, Wang, GuangYing, Xiong, Jie, Yang, WenTao, Sun, ZongYi, Feng, JinMei, Warren, Alan, Miao, Wei. Insights into the origin and evolution of Peritrichia (Oligohymenophorea, Ciliophora) based on analyses of morphology and phylogenomics. MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2019, 第 3 作者132(1): 25-35, http://dx.doi.org/10.1016/j.ympev.2018.11.018.
[22] 熊杰, 陈建平, 陈晓光, 陈瑛, 冯耀宇, 高凤, 高珊, 顾福康, 黄兵, 梁爱华, 龙红岸, 赖德华, 伦照荣, 缪炜, 倪兵, 邱子健, 邵晨, 汪建国, 文建凡, 徐奎栋, 余育和, 张龙现, 张西臣, 赵元莙, 宋微波. 进展中的原生动物学研究：热点领域与新格局. 中国科学:生命科学[J]. 2019, 第 1 作者49(10): 1301, https://www.sciengine.com/doi/10.1360/SSV-2019-0127.
[23] Wei, Wei, Chen, Kai, Miao, Wei, Yang, Wentao, Xiong, Jie. Pseudocohnilembus persalinus genome database - the first genome database of facultative scuticociliatosis pathogens. BMC GENOMICS[J]. 2018, 第 5 作者 通讯作者 19(1): https://doaj.org/article/148a5360ad334dc0803bac4b7d712e12.
[24] Wang, Ruanlin, Miao, Wei, Wang, Wei, Xiong, Jie, Liang, Aihua. EOGD: the Euplotes octocarinatus genome database. BMC GENOMICS[J]. 2018, 第 4 作者 通讯作者 19(1): https://doaj.org/article/2e527cd49fa249a2a57d50cd256bfc4a.
[25] Zhang, Jing, Yan, Guanxiong, Tian, Miao, Ma, Yang, Xiong, Jie, Miao, Wei. A DP-like transcription factor protein interacts with E2fl1 to regulate meiosis in Tetrahymena thermophila. CELL CYCLE[J]. 2018, 第 5 作者17(5): 634-642, http://www.irgrid.ac.cn/handle/1471x/1760403.
[26] Feng, Lifang, Wang, Guangying, Hamilton, Eileen P, Xiong, Jie, Yan, Guanxiong, Chen, Kai, Chen, Xiao, Dui, Wen, Plemens, Amber, Khadr, Lara, Dhanekula, Arjune, Juma, Mina, Hung Quang Dang, Kapler, Geoffrey M, Orias, Eduardo, Miao, Wei, Liu, Yifan. A germline-limited piggyBac transposase gene is required for precise excision in Tetrahymena genome rearrangement. NUCLEIC ACIDS RESEARCH[J]. 2017, 第 4 作者45(16): 9481-9502, http://www.irgrid.ac.cn/handle/1471x/1759909.
[27] Wang, Ruanlin, Xiong, Jie, Wang, Wei, Miao, Wei, Liang, Aihua. High frequency of+1 programmed ribosomal frameshifting in Euplotes octocarinatus. SCIENTIFIC REPORTS[J]. 2016, 第 2 作者6: http://www.irgrid.ac.cn/handle/1471x/1085396.
[28] Mu, Weijie, Wang, Qi, Bourland, William A, Jiang, Chuanqi, Yuan, Dongxia, Pan, Xuming, Miao, Wei, Chen, Ying, Xiong, Jie. Epidermal growth factor-induced stimulation of proliferation and gene expression changes in the hypotrichous ciliate, Stylonychia lemnae. GENE[J]. 2016, 第 9 作者 通讯作者 592(1): 186-192, http://dx.doi.org/10.1016/j.gene.2016.08.004.
[29] 鲁义善, 杨文涛, 程俊, 袁冬霞, 缪炜, 熊杰. 一株养殖大菱鲆体表溶血性蜡状芽胞杆菌的分离鉴定及基因组分析. 基因组学与应用生物学[J]. 2016, 第 6 作者35(11): 3094-3104, http://lib.cqvip.com/Qikan/Article/Detail?id=670744689.
[30] Xiong, Jie, Gao, Shan, Dui, Wen, Yang, Wentao, Chen, Xiao, Taverna, Sean D, Pearlman, Ronald E, Ashlock, Wendy, Miao, Wei, Liu, Yifan. Dissecting relative contributions of cis- and trans-determinants to nucleosome distribution by comparing Tetrahymena macronuclear and micronuclear chromatin. NUCLEIC ACIDS RESEARCH[J]. 2016, 第 1 作者44(21): 10091-10105, https://www.webofscience.com/wos/woscc/full-record/WOS:000393979400012.
[31] 张晶, 熊杰, 袁冬霞, 田苗, 闫冠雄, 缪炜. 嗜热四膜虫SPO11基因缺陷型细胞株的基因表达变化分析. 基因组学与应用生物学[J]. 2016, 第 2 作者350-357, http://ir.ihb.ac.cn/handle/342005/38734.
[32] 杨文涛, 王光营, 田苗, 袁冬霞, 缪炜, 曾宏辉, 熊杰. 嗜热四膜虫功能基因组数据库. 中国科学数据:中英文网络版[J]. 2016, 第 7 作者39-46, http://lib.cqvip.com/Qikan/Article/Detail?id=7101584579.
[33] 宁应之, 陈凯, 张晶, 姜传奇, 熊杰, 缪炜. 八种纤毛虫减数分裂基因的分子进化研究. 动物学杂志[J]. 2016, 第 5 作者51(2): 301-309, http://dwxzz.ioz.ac.cn/ch/reader/view_abstract.aspx?file_no=15247&flag=1.
[34] Yan, GuanXiong, Dang, Huai, Tian, Miao, Zhang, Jing, Shodhan, Anura, Ning, YingZhi, Xiong, Jie, Miao, Wei. Cyc17, a meiosis-specific cyclin, is essential for anaphase initiation and chromosome segregation in Tetrahymena thermophila. CELL CYCLE[J]. 2016, 第 7 作者15(14): 1855-1864, https://dx.doi.org/10.1080/15384101.2016.1188238.
[35] 张晶, 闫冠雄, 田苗, 二袁冬霞, 熊杰, 缪炜. 嗜热四膜虫SP011基因缺陷型细胞株的基因表达变化分析. 基因组学与应用生物学[J]. 2016, 第 5 作者35(2): 350-357, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=5650248&detailType=1.
[36] 张晶, 杨文涛, 熊杰, 曾宏辉, 缪炜, 袁冬霞, 田苗, 闫冠雄. 四膜虫功能基因组数据库增量更新2016：生活史和减数分裂转录组及磷酸化蛋白组资源建设. 基因组学与应用生物学[J]. 2016, 第 3 作者35(6): 1443-1450, http://www.irgrid.ac.cn/handle/1471x/1759993.
[37] Hamilton, Eileen P, Kapusta, Aurelie, Huvos, Piroska E, Bidwell, Shelby L, Zafar, Nikhat, Tang, Haibao, Hadjithomas, Michalis, Krishnakumar, Vivek, Badger, Jonathan H, Caler, Elisabet V, Russ, Carsten, Zeng, Qiandong, Fan, Lin, Levin, Joshua Z, Shea, Terrance, Young, Sarah K, Hegarty, Ryan, Daza, Riza, Gujja, Sharvari, Wortman, Jennifer R, Birren, Bruce W, Nusbaum, Chad, Thomas, Jainy, Carey, Clayton M, Pritham, Ellen J, Feschotte, Cedric, Noto, Tomoko, Mochizuki, Kazufumi, Papazyan, Romeo, Taverna, Sean D, Dear, Paul H, CassidyHanley, Donna M, Xiong, Jie, Miao, Wei, Orias, Eduardo, Coyne, Robert S. Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome. ELIFE[J]. 2016, 第 33 作者5(1): https://doaj.org/article/5b8a3b25eb90453aad49d3598e13d79e.
[38] Feng, JinMei, Jiang, ChuanQi, Warren, Alan, Tian, Miao, Cheng, Jun, Liu, GuangLong, Xiong, Jie, Miao, Wei. Phylogenomic analyses reveal subclass Scuticociliatia as the sister group of subclass Hymenostomatia within class Oligohymenophorea. MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2015, 第 7 作者90: 104-111, http://dx.doi.org/10.1016/j.ympev.2015.05.007.
[39] 宁应之, 赵康平, 熊杰, 袁冬霞, 缪炜. 嗜热四膜虫可变剪接基因鉴定及功能分析. 基因组学与应用生物学[J]. 2015, 第 3 作者34(1): 17-27, http://lib.cqvip.com/Qikan/Article/Detail?id=665888650.
[40] Xiong, Jie, Feng, Jinmei, Yuan, Dongxia, Zhou, Jun, Miao, Wei. Tracing the structural evolution of eukaryotic ATP binding cassette transporter superfamily. SCIENTIFIC REPORTS[J]. 2015, 第 1 作者5: http://www.irgrid.ac.cn/handle/1471x/994830.
[41] Xiong, Jie, Wang, Guangying, Cheng, Jun, Tian, Miao, Pan, Xuming, Warren, Alan, Jiang, Chuanqi, Yuan, Dongxia, Miao, Wei. Genome of the facultative scuticociliatosis pathogen Pseudocohnilembus persalinus provides insight into its virulence through horizontal gene transfer. SCIENTIFIC REPORTS[J]. 2015, 第 1 作者5: http://dx.doi.org/10.1038/srep15470.
[42] Wu, Shu, Xiong, Jie, Yu, Yuhe. Taxonomic Resolutions Based on 18S rRNA Genes: A Case Study of Subclass Copepoda. PLOS ONE[J]. 2015, 第 2 作者10(6): https://doaj.org/article/1b8447af40bc4ad8a0f67199f2a00799.
[43] Feng, JinMei, Xiong, Jie, Zhang, JinYong, Yang, YaLin, Yao, Bin, Zhou, ZhiGang, Miao, Wei. New phylogenomic and comparative analyses provide corroborating evidence that Myxozoa is Cnidaria (vol 81, pg 10, 2014). MOLECULAR PHYLOGENETICS AND EVOLUTION. 2015, 第 2 作者82(*): 343-343, http://www.irgrid.ac.cn/handle/1471x/978697.
[44] Jin-Mei Feng, Jie Xiong, Jin-Yong Zhang, Ya-Lin Yang, Bin Yao, Zhi-Gang Zhou, Wei Miao. Corrigendum to "New phylogenomic and comparative analyses provide corroborating evidence that Myxozoa is Cnidaria" Mol. Phylogenet. Evol. 81 (2014) 10–18. MOLECULAR PHYLOGENETICS AND EVOLUTION. 2015, 第 2 作者82: 343-343, http://dx.doi.org/10.1016/j.ympev.2014.10.017.
[45] Ning YingZhi, Dang Huai, Liu GuangLong, Xiong Jie, Yuan DongXia, Feng LiFang, Miao Wei. ATP-binding cassette transporter enhances tolerance to DDT in Tetrahymena. SCIENCE CHINA-LIFE SCIENCES[J]. 2015, 第 4 作者58(3): 297-304, http://www.irgrid.ac.cn/handle/1471x/978684.
[46] Yang, Yalin, Xiong, Jie, Zhou, Zhigang, Huo, Fengmin, Miao, Wei, Ran, Chao, Liu, Yuchun, Zhang, Jinyong, Feng, Jinmei, Wang, Meng, Wang, Min, Wang, Lei, Yao, Bin. The Genome of the Myxosporean Thelohanellus kitauei Shows Adaptations to Nutrient Acquisition within Its Fish Host. GENOME BIOLOGY AND EVOLUTION[J]. 2014, 第 2 作者6(12): 3182-3198, http://dx.doi.org/10.1093/gbe/evu247.
[47] Tian, Miao, Chen, Xiulan, Xiong, Qian, Xiong, Jie, Xiao, Chuanle, Ge, Feng, Yang, Fuquan, Miao, Wei. Phosphoproteomic Analysis of Protein Phosphorylation Networks in Tetrahymena thermophila, a Model Single-celled Organism. MOLECULAR & CELLULAR PROTEOMICS[J]. 2014, 第 4 作者13(2): 503-519, http://dx.doi.org/10.1074/mcp.M112.026575.
[48] Feng, JinMei, Xiong, Jie, Zhang, JinYong, Yang, YaLin, Yao, Bin, Zhou, ZhiGang, Miao, Wei. New phylogenomic and comparative analyses provide corroborating evidence that Myxozoa is Cnidaria. MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2014, 第 2 作者81: 10-18, http://dx.doi.org/10.1016/j.ympev.2014.08.016.
[49] Ye, Jun, Chang, Yue, Yan, Yu, Xiong, Jie, Xue, XiMei, Yuan, Dongxia, Sun, GuoXin, Zhu, YongGuan, Miao, Wei. Identification and characterization of the arsenite methyltransferase from a protozoan, Tetrahyrnena pyriformis. AQUATIC TOXICOLOGY[J]. 2014, 第 4 作者149(1): 50-57, http://www.irgrid.ac.cn/handle/1471x/852667.
[50] 宁应之, 党怀, 刘光龙, 熊杰, 袁冬霞, 冯立芳, 缪炜. ABC转运蛋白提升四膜虫对DDT的耐受能力. 中国科学. 生命科学[J]. 2014, 第 4 作者44(11): 1133, http://dx.doi.org/10.1360/N052014-00090.
[51] Chang, Yue, Liu, Guanglong, Guo, Lina, Liu, Hongbo, Yuan, Dongxia, Xiong, Jie, Ning, Yingzhi, Fu, Chengjie, Miao, Wei. Cd-Metallothioneins in Three Additional Tetrahymena Species: Intragenic Repeat Patterns and Induction by Metal Ions. JOURNAL OF EUKARYOTIC MICROBIOLOGY[J]. 2014, 第 6 作者61(4): 333-342, http://dx.doi.org/10.1111/jeu.12112.
[52] 袁冬霞, 冯立芳, 熊杰, 缪炜. 四膜虫rDNA表达载体的改造及用于异源基因的高效表达. 基因组学与应用生物学[J]. 2013, 第 3 作者32(4): 548-556, http://lib.cqvip.com/Qikan/Article/Detail?id=46945717.
[53] Marcella D Cervantes, Eileen P Hamilton, Jie Xiong, Michael J Lawson, Dongxia Yuan, Michalis Hadjithomas, Wei Miao, Eduardo Orias. Selecting one of several mating types through gene segment joining and deletion in Tetrahymena thermophila.. PLOS BIOLOGY[J]. 2013, 第 3 作者11(3): IR_Article.
[54] Xiong, Jie, Lu, Yuming, Feng, Jinmei, Yuan, Dongxia, Tian, Miao, Chang, Yue, Fu, Chengjie, Wang, Guangying, Zeng, Honghui, Miao, Wei. Tetrahymena Functional Genomics Database (TetraFGD): an integrated resource for Tetrahymena functional genomics. DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION[J]. 2013, 第 1 作者2013(X): http://www.irgrid.ac.cn/handle/1471x/733510.
[55] Jie XiongYuming LuJinmei FengDongxia YuanMiao TianYue ChangChengjie FuGuangying WangHonghui ZengWei Miao. Tetrahymena Functional Genomics Database (TetraFGD): an integrated resource for Tetrahymena functional genomics. DATABASE[J]. 2013, 2013:
[56] Gao, Shan, Xiong, Jie, Zhang, Chunchao, Berquist, Brian R, Yang, Rendong, Zhao, Meng, Molascon, Anthony J, Kwiatkowski, Shaina Y, Yuan, Dongxia, Qin, Zhaohui, Wen, Jianfan, Kapler, Geoffrey M, Andrews, Philip C, Miao, Wei, Liu, Yifan. Impaired replication elongation in Tetrahymena mutants deficient in histone H3 Lys 27 monomethylation. GENES & DEVELOPMENT[J]. 2013, 第 2 作者27(15): 1662-1679, http://www.irgrid.ac.cn/handle/1471x/701991.
[57] Xiong, Jie, Lu, Xingyi, Zhou, Zhemin, Chang, Yue, Yuan, Dongxia, Tian, Miao, Zhou, Zhigang, Wang, Lei, Fu, Chengjie, Orias, Eduardo, Miao, Wei. Transcriptome Analysis of the Model Protozoan, Tetrahymena thermophila, Using Deep RNA Sequencing. PLOS ONE[J]. 2012, 第 1 作者 通讯作者 7(2): http://www.irgrid.ac.cn/handle/1471x/495230.
[58] Xiong, Jie, Yuan, Dongxia, Fillingham, Jeffrey S, Garg, Jyoti, Lu, Xingyi, Chang, Yue, Liu, Yifan, Fu, Chengjie, Pearlman, Ronald E, Miao, Wei. Gene Network Landscape of the Ciliate Tetrahymena thermophila. PLOS ONE[J]. 2011, 第 1 作者 通讯作者 6(5): http://dx.doi.org/10.1371/journal.pone.0020124.
[59] 畅悦, 冯立芳, 熊杰, 缪炜. 嗜热四膜虫金属硫蛋白基因MMT2和MTT4的表达规律比较与进化模式分析. 动物学研究[J]. 2011, 第 3 作者32(5): 476-484, http://lib.cqvip.com/Qikan/Article/Detail?id=39740376.
[60] XIONG Jie, LU XingYi, LU YuMing, ZENG HongHui, YUAN DongXia, FENG LiFang, CHANG Yue, Josephine BOWEN, Martin GOROVSKY, FU ChengJie, MIAO Wei. Tetrahymena Gene Expression Database (TGED):A resource of microarray data and co-expression analyses for Tetrahymena. 中国科学：生命科学英文版[J]. 2011, 第 1 作者54(1): 65-67, http://lib.cqvip.com/Qikan/Article/Detail?id=36441419.
[61] 陆星亦, 熊杰, 袁冬霞, 缪炜. 嗜热四膜虫腺苷三磷酸结合盒转运蛋白ABCC10基因的可变剪切分析. 动物学研究[J]. 2011, 第 2 作者32(6): 605,
[62] Xiong Jie, Lu XingYi, Lu YuMing, Zeng HongHui, Yuan DongXia, Feng LiFang, Chang Yue, Bowen, Josephine, Gorovsky, Martin, Fu ChengJie, Miao Wei. Tetrahymena Gene Expression Database (TGED): A resource of microarray data and co-expression analyses for Tetrahymena. SCIENCE CHINA-LIFE SCIENCES[J]. 2011, 第 1 作者54(1): 65-67, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=4143274&detailType=1.
[63] 陆星亦, 熊杰, 袁冬霞, 缪炜. 嗜热四膜虫腺苷三磷酸结合盒转运蛋白ABCCIO基因的可变剪切分析. 动物学研究[J]. 2011, 第 2 作者32(6): 605-610, http://lib.cqvip.com/Qikan/Article/Detail?id=40278879.
[64] 熊杰, 陆星亦, 陆钰明, 曾宏辉, 袁冬霞, 冯立芳, 畅悦, B Josephine, G Martin, 傅诚杰, 缪炜. 四膜虫基因表达数据库：四膜虫全基因组基因表达芯片和协同表达分析的数据资源. 中国科学：生命科学[J]. 2010, 第 1 作者1087-1089, http://lib.cqvip.com/Qikan/Article/Detail?id=36475552.
[65] Xiong, Jie, Feng, Lifang, Yuan, Dongxia, Fu, Chengjie, Miao, Wei. Genome-wide identification and evolution of ATP-binding cassette transporters in the ciliate Tetrahymena thermophila: A case of functional divergence in a multigene family. BMC EVOLUTIONARY BIOLOGY[J]. 2010, 第 1 作者10(1): http://ir.ihb.ac.cn/handle/342005/15532.
[66] Miao, Wei, Xiong, Jie, Bowen, Josephine, Wang, Wei, Liu, Yifan, Braguinets, Olga, Grigull, Jorg, Pearlman, Ronald E, Orias, Eduardo, Gorovsky, Martin A. Microarray Analyses of Gene Expression during the Tetrahymena thermophila Life Cycle. PLOS ONE[J]. 2009, 第 2 作者4(2): http://ir.ihb.ac.cn/handle/342005/14438.
[67] Fu, Chengjie, Xiong, Jie, Miao, Wei. Genome-wide identification and characterization of cytochrome P450 monooxygenase genes in the ciliate Tetrahymena thermophila. BMC GENOMICS[J]. 2009, 第 2 作者10: http://dx.doi.org/10.1186/1471-2164-10-208.
科研活动
科研项目
（ 1 ） 三种四膜虫全基因组N6-甲基腺嘌呤的鉴定及其功能进化, 主持, 国家级, 2017-01--2020-12
（ 2 ） 中国科学院青年创新促进会会员人才专项, 主持, 部委级, 2016-01--2019-12
（ 3 ） 中国科学院知识创新工程青年人才领域前沿项目, 主持, 市地级, 2014-01--2015-12
（ 4 ） 模式生物嗜热四膜虫转录组数据库建设, 主持, 院级, 2014-01--2015-12
（ 5 ） 模式原生动物嗜热四膜虫DNA复制起点的鉴定及其特征分析, 主持, 国家级, 2014-01--2016-12
（ 6 ） 原生动物四膜虫生殖小核(germline nucleus)体功能(somatic function)的分子基础研究, 主持, 国家级, 2019-01--2021-12
（ 2 ） 中国科学院青年创新促进会会员人才专项, 主持, 部委级, 2016-01--2019-12
（ 3 ） 中国科学院知识创新工程青年人才领域前沿项目, 主持, 市地级, 2014-01--2015-12
（ 4 ） 模式生物嗜热四膜虫转录组数据库建设, 主持, 院级, 2014-01--2015-12
（ 5 ） 模式原生动物嗜热四膜虫DNA复制起点的鉴定及其特征分析, 主持, 国家级, 2014-01--2016-12
（ 6 ） 原生动物四膜虫生殖小核(germline nucleus)体功能(somatic function)的分子基础研究, 主持, 国家级, 2019-01--2021-12
参与会议
（1）四膜虫比较基因组学研究 中国动物学会原生动物学分会第十八次学术讨论会 2015-08-24
指导学生
现指导学生
李晨薇 硕士研究生 085238-生物工程