Email: lijinhua@mail.iggcas.ac.cn
Telephone: 82998432
Address: 北京市朝阳区北土城西路19号
Postcode: 100029
Research Areas
My research area is (1) Biomineralization and magnetism of biogenic magnetic minerals and their applications in nanopaleomagnetism and nanomagnetism; (2) Biomineralization and fossilization of microbes and early life in the Earth; and (3) Electron microscopic and microspectroscopic study of microbial miner
My research interest and skills are microbe-mineral interactions, in particular microbial iron mineralization, experimental fossilization of microorganisms and biominerals, and the identification of microfossils and fossil biominerals in ancient rocks. Extensive experience with high-resolution electron-microscopy (SEM, TEM, FIB), Scanning Transmission X-ray Microscopy (STXM) at international light sources, Rock Magnetism and Microbiology.
Education
- Mar., 2007-Jan., 2010 Geophysics of the Solid Earth, Ph. D., Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing, China
- Sep., 2003-Jun., 2006 Microbiology, M. Sc., State Key Laboratory for Microbial Technology (SKLMT), Shandong University, Ji’nan, China
- Sep., 1997-Jun., 2001 Biology, B. Sc., Northwest University, Xi’an, China
Experience
- Apr., 2013-Now, Associate Professor, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing, China
- Jan., 2010-Dec., 2012, Post-doctoral Scientist, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing, China
- Mar., 2012-Mar., 2014, Post-doctoral Scientist, Institut de Minéralogie, de Physique des Matériaux, et de Cosmochimie (IMPMC), Sorbonne Universités – UPMC, Muséum National d'Histoire Naturelle (MNHN), Paris, France
- Jul., 2011, Visiting scholar, Institut de Minéralogie, de Physique des Matériaux, et de Cosmochimie (IMPMC), Sorbonne Universités – UPMC, Muséum National d'Histoire Naturelle (MNHN), Paris, France
- Jan., 2011-Apr., 2011, Visiting scholar, Institut de Minéralogie, de Physique des Matériaux, et de Cosmochimie (IMPMC), Sorbonne Universités – UPMC, Muséum National d'Histoire Naturelle (MNHN), Paris, France
- Jul., 2006-Mar., 2007, Graduate Research
Assistant, Institute of Geology and Geophysics, Chinese Academy of Sciences,
Beijing, China
Jul., 2001-Sep., 2003, Graduate Teaching Assistant, Northwest Agriculture and Forestry University, Yangling, China
Publications
Papers
Fist author's paper:
[14] Li JH, Oliver IM, Cam J. Boudier T, Blondeau M, Leroy E, Cosmidis J, Skouri-Panet F, Guigner JM, Ferard C, Poinsot M, Moreira D, Lopez-Garcia P, Cassier-Chauvat C, Chauvat F, Benzerara K, Biomineralization patterns of intracellular carbonatogenesis in cyanobacteria: Molecular hypotheses, Minerals, 2016, 6(1), 10. doi:10.3390/min6010010.
[13] Dong Y#, Li JH#, Zhang WC, Zhang WY, Zhao Y, Pan YX, Xiao T, Wu LF, Pan HM*, The detection of magnetotactic bacteria in deep sea sediments from the east Pacific Manganese Nodule Province, Env. Microbiol. Rep., 2016, doi: 10.1111/1758-2229.12374. (#Contributed equally to this study)
[12] Li JH, Pan YX, Applications of transmission electron microscopy in the Earth science. SCIENCE CHINA: Earth Sciences, 2015, 45(9): 1359-1382. (In Chinese, Invited review)
[11] Li JH, Menguy N, Gatel C, Boureau V, Snoeck E, Patriarche G, Leroy E, Pan YX, Crystal growth of bullet-shaped magnetite in magnetotactic bacteria of the Nitrospirae phylum, J. R. Soc. Interface, 2015, 12(103), doi.org/10.1098/rsif.2014.1288.
[10] Li JH, Bernard S, Benzerara K, Beysacc O, Allard T, Cosmidis J, Moussou J, Impact of biomineralization on the preservation of microorganisms during fossilization: an experimental perspective, Earth Planet. Sci. Lett., 2014, 400: 113-122.
[9] Li JH, Benzerara K, Bernard S, Beysacc O, The link between biomineralization and fossilization of bacteria: insights from field and experimental studies, Chem. Geol., 2013, 359: 49-69. (Invited review).
[8] Li JH, Ge KP, Pan YX, Williams W, Liu QS, Qin HF, A very strong angular dependence of magnetic properties of magnetosome chains: Implications for rock magnetism and paleomagnetism, Geochem. Geophys. Geosyst., 2013, 14(10): 3887-3907.
[7] Li JH, Wu WF, Liu QS, Pan YX, Magnetic anisotropy, magnetostatic interaction and the identification of magnetofossils, Geochem. Geophys. Geosyst., 2012, 13(Q10Z51), doi:10.1029/2012GC004384.
[6] Li JH, Pan YX, Environmental factors affect magnetite magnetosome synthesis in Magnetospirillum magneticum AMB-1: Implications for biologically controlled mineralization, Geomicrobiol. J., 2012, 29(4): 362-373.
[5] Li JH, Ge X, Zhang XK, Chen GJ, Pan YX, Recover vigorous cells of Magnetospirillum magneticum AMB-1 by capillary magnetic separation, Chin. J. Oceanol. Limnol., 2010, 28(4): 826-831.
[4] Li JH, Pan YX, Liu QS, Qin HF, Deng CL, Che RC, Yang XA, A comparative study of magnetic properties between whole cells and isolated magnetosomes of Magnetospirillum magneticum AMB-1, Chin. Sci. Bull., 2010, 55(1): 38-44. [封面文章]
[3] Li JH, Pan YX, Liu QS, Yu-Zhang K, Menguy N, Che RC, Qin HF, Lin W, Wu WF, Petersen N, Yang XA, Biomineralization, crystallography and magnetic properties of bullet-shaped magnetite magnetosomes in giant rod magnetotactic bacteria, Earth Planet. Sci. Lett., 2010, 293(3-4): 368-376.
[2] Ding Y#, Li JH#, Liu JN, Yang J, Jiang W, Tian JS, Li Y*, Pan YX*, Li JL, Deletion of the ftsZ-Like Gene Results in the Production of Superparamagnetic Magnetite Magnetosomes in Magnetospirillum gryphiswaldense, J. Bacteriol., 2010, 192(4): 1097-1105. (#Contributed equally to this study)
[1] Li JH, Pan YX, Chen GJ, Liu QS, Tian LX, Lin W, Magnetite magnetosome and fragmental chain formation of Magnetospirillum magneticum AMB-1: Transmission electron microscopy and magnetic observations, Geophys. J. Int., 2009, 177(1): 33-42.
Co-author’s paper
[26] Chen YR, Zhang WY, Zhou K, Pan HM, Du HJ, Xu C, Xu JH, Pradel N, Santini CL, Li JH, Huang H, Pan YX, Xiao T, Wu LF. Novel species and expanded distribution of ellipsoidal multicellular magnetotactic prokaryotes, Env. Microbiol. Rep., 2016, doi: 10.1111/1758-2229.12371.
[25] Chen HT, Li JH, Xing X, Du ZJ, Chen GJ, Unexpected diversity of magnetococci in Intertidal sedimens of Xiaoshi Island in the North Yello sea, J. NanoMaterials., 2015, doi: http://dx.doi.org/10.1155/2015/902121.
[24] Zeyen N, Benzerara K, Li JH, Groleau A, Balan E, Robert JL, Esteve I, Tavera R, Moreira D, Lopez-Garcia P, Formation of low-T hydrated silicates in modern microbialites from Mexico and implications for microbial fossilization, Front. Earth Sci., 2015, 3:64. doi: http://dx.doi.org/10.3389/feart.2015.00064.
[23] Wang YZ, Lin W, Li JH, Zhang TW, Li Y, Tian JS, Gu LX, Heyden YV, Pan YX, Characterizing and optimizing magnetosome production of Magnetospirillum sp. XM-1 isolated from Xi'an City Moat, China, FEMS Microbiol. Lett., 2015, 362. doi: http://dx.doi.org/10.1093/femsle/fnv167.
[22] Liu S Z, Deng CL, Xiao JL, Li JH, Paterson Greig A, Chang L, Yi L, Qin HF, Pan YX, Zhu RX, Insolation driven biomagnetic response to the Holocene Warm Period in semi-arid East Asia, Sci. Rep., 2015, doi:10.1038/srep08001.
[21] Chen YR, Zhang R, Du HJ, Pan HM, Zhang WY, Zhou K, Li JH, Xiao T, Wu LF, A novel species of ellipsoidal multicellular magnetotactic prokaryotes from Lake Yuehu in China, Environ. Microbiol., 2015, 17(3): 637-647. doi: 10.1111/1462-2920.12480.
[20] Benzerara K, Skouri-Panet F, Li JH, Férard C, Gugger M, Laurent T, Couradeau E, Ragon M, Cosmidis J, Menguy N, Margaret-Oliver I, Tavera R, López-García P, Moreira D, Intracellular Ca-carbonate biomineralization is widespread in cyanobacteria, Proc. Natl. Acad. Sci., 2014, 111(30): 10933-10938.
[19] Miot J, Li JH, Benzerara K, Sougrati MT, Ona-Nguema G, Bernard S, Jumas J-C, Guyot F, Formation of single domain magnetite by green rust oxidation promoted by microbial anaerobic nitrate-dependent iron oxidation. Geochim. Cosmochim. Acta, 2014, 139: 327-343.
[18] Chen, HT, Lin W, Wang YZ, Li JH, Chen GJ, Pan YX, Diversity and magnetism of magnetotactic bacteria in Lake Weiyang near Xi’An city. Quaternary Sci., 2013, 33(1): 88-96 (In Chinese).
[17] Wang YZ, Lin W, Li JH, Pan YX, Changes of cell growth and magnetosome biomineralization in Magnetospirillum magneticum AMB-1 after ultraviolet-B irradiation, Front. Microbiol., 2013, 4, doi: 10.3389/fmicb.2013.00397.
[16] Wu WF, Wang FP, Li JH, Yang XW, Xiao X, Pan YX, Iron reduction and mineralization of deep-sea iron reducing bacterium Shewanella piezotolerans WP3 at elevated hydrostatic pressures, Geobiology, 2013, 11(6): 593-601.
[15] Yang J, Li SQ, Huang XL, Li JH, Li L, Pan YX, Li Y, MamX encoded by the mamXY operon is involved in control of magnetosome maturation in Magnetospirillum gryphiswaldense MSR-1, BMC Microbiology, 2013, 13: 203.
[14] Jandacka P, Alexa P, Pistora J, Li JH, Vojtkova H, Ballirano P, Size distributions of nanoparticles from magnetotactic bacteria as signatures of biologically controlled mineralization, Am. Mineral., 2013, 98(11-12): 2105-2114.
[13] Walls M, Cao CQ, Yu-Zhang K, Li JH, Pan YX, Identification of Ferrous-Ferric Fe3O4 Nanoparticles in Recombinant Human Ferritin Cages, Microsc. Microanal., 2013, 19(04): 835-841.
[12] Su YL, Gao X, Liu QS, Wang JB, Haberzettl T, Zhu LP, Li JH, Duan ZQ, Tian LD, Mineral magnetic study of lacustrine sediments from Lake Pumoyum Co, southern Tibet, over the last 19 ka and paleoenvironmental significance, Tectonophysics, 2013, 588: 209-221.
[11] Wang YZ, Lin W, Li JH, Pan YX, High Diversity of the δ-proteobacteria Magnetotactic Bacteria in a Freshwater Niche, Appl. Environ. Microbiol., 2013, 79(8): 2813-2817.
[10] Zhou K, Zhang WY, Pan HM, Li JH, Yue HD, Xiao T, Wu LF, Adaptation of spherical multicellular magnetotactic prokaryotes to the geochemically variable habitat of an intertidal zone, Environ. Microbiol., 2013,15(5): 1595-1605. doi: 10.1111/1462-2920.12057.
[9] Lin W, Li JH, Pan YX, Newly Isolated but Uncultivated Magnetotactic Bacterium of the Phylum Nitrospirae from Beijing, China, Appl. Environ. Microbiol., 2012, 78(3): 668-675.
[8] Wu WF, Li B, Hu J, Li JH, Wang FP, Pan YX, Iron reduction and magnetite biomineralization mediated by a deep-sea iron-reducing bacterium Shewanella piezotolerans WP3, J. Geophys. Res., 2013, 116(G04034), doi:04010.01029/02011JG001728.
[7] Li B, Wu WF, Li JH, Pan YX, Effects of temperature on biomineralization of iron reducing bacteria Shewanella putrefaciens CN32, Chinese J. Geophys. (in Chinese), 2011, 54(10): 2631-2638.
[6] Wu WF, Li JH, Zhang CX, Pan YX, Effects of orgnaic matter on thermal stability of nanomater-sized magnetite. Chinese J. Geophys. (in Chinese), 2010, 53(10): 2427-2434.
[5] Zhu KL, Pan HM, Li JH, Yu-Zhang K, Zhang SD, Zhang WY, Zhou K, Yue HD, Pan YX, Xiao T, Wu LF, Isolation and characterization of a marine magnetotactic spirillum axenic culture QH-2 from an intertidal zone of the China Sea, Rev. Microbiol., 2010, 161(4): 276-283.
[4] Lin W, Li JH, Schüler D, Jogler C, Pan YX, Diversity analysis of magnetotactic bacteria in Lake Miyun, northern China, by restriction fragment length polymorphism, Syst. Appl. Microbiol., 2009, 32(5): 342-350.
[3] Pan YX, Lin W, Li JH, Wu WF, Tian LX, Deng CL, Liu QS, Zhu RX, Winklhofer M, Petersen N, Reduced efficiency of magnetotaxis in magnetotactic coccoid bacteria in higher than geomagnetic fields, Biophys. J., 2009, 97(4): 986-991.
[2] Lin W, Tian LX, Li JH, Pan YX, Does capillary racetrack-based enrichment reflect the diversity of uncultivated magnetotactic cocci in environmental samples?, FEMS Microbiol. Lett., 2008, 279(2): 202-206.
[1] Wang L, Pan YX, Li JH, Qin HF, Magnetic properties related to thermal treatment of pyrite, Science in China Series D-Earth Sciences, 2008, 51(8), 1144-1153.
CONFERENCE ABSTRACT (SELECTED)
[11] Li JH, Menguy N, Benzerara K, Deng CL, Kissel C, Liu SQ, Zhu RX, Pan YX. Biomineralization and magnetism of magnetotactic bacteria: Implications for the identification of magnetofossils,26th IUGG 2015 General Assembly,June 22-July 2,2015, Prague, Czech Republic. (A09 Open Symposium on Paleomagnetism and Rock Magnetism (Div. I)Invited talk)
[10] Li JH, Benzerara K, Bernard S, Beyssac O, Pan YX, Impact of biominerlization on fossilization of bacteria: Insights from field and experimental studies. The 3rd International Conference of Geobiology, June 8-10, 2014, Wuhan, China.
[9] Li JH, Menguy N, Gater C, Boureau V, Snoeck E, Patriarche G, Leroy E, Pan YX, Crystal growth of bullet-shaped magnetite in magnetotactic bacteria of the Nitrospirae phylum. The 3rd International Conference of Geobiology, June 8-10, 2014, Wuhan, China.
[8] Benzerara K, Li JH, Bernard S, Cosmidis J, Zeyen N, Beyssac O, Fossilization of bacteria: Insights from field and experimental studies of modern microorganisms, EGU General Assembly 2014, Apr. 27 to May. 02 in Vienna, Austria
[7] Li JH, Zeyen N, Benzerara K, Bernard S, Beyssac O, Poorly-crystalline Fe(Mg) Silicates involved in early fossilization of microbes in modern microbialites, 2013 Goldschmidt Conference, Aug. 26-30 in Florence, Itay.
[6] Li JH, Bernard S, Beyssac O, Benzerara K, Moussou J, Experimental fossilization of bacteria and biominerals: Applicatioons in the search microfossils in ancient rocks, 2012 GSA Annual Meeting, Nov. 04-08 in Charlotte in Charlotte .
[5] Benzerara K, Cosmidis J, Li JH, Jennyfer M, Couradeau E, MSA award lecture: Biomineralization and fossilization of bacteria: what do we learn from field and experimental studies, 2012 GSA Annual Meeting, Nov. 04-08 in Charlotte, USA., USA.
[4] Li JH, Menguy N, Pan YX, Crystal growth of bullet-shaped magnetosomes in Nitrospira phylum magnetotactic bacteria, 2012 International Meeting on Magnetotactic Bacteria, Jun. 11-14 in Berkeley, USA.
[3] Li JH, Pan YX, How shape anisotropy affects bulk magnetic properties: Observations of magnetosome chains in magnetotactic bacteria, EGU2011, Apr. 03-08 in Vienna, Austria.
[2] Li JH, Pan YX, Liu QS, Yu-Zhang K, Menguy N, Che RC, Qin HF, Lin W, Wu WF, Petersen N, Yang XA, Biomineralization, crystallography and magnetic properties of bullet-shaped magnetite magnetosomes in giant rod magnetotactic bacteria, MTB2010, Sep., 01-04 in Beijing, China.
[1] Li JH, Pan YX, Observation of magnetosome growth and chain arrangement of Magnetospirillum magneticum AMB-1. Workshop on Magnetotactic Bacteria. Jun., 6-10, 2008 in Balatonfured, Hungary.