传染病一直以来都是人类健康的重要威胁，据WHO统计每年全球有约1500万人因传染病丧生。病毒作为重要的传染病病原，由于其变异速率快、遗传与传播模式独特，经常会造成较大规模的暴发与流行。近年来，国际上相继出现了（禽）流感病毒、埃博拉病毒、中东呼吸综合征冠状病毒、寨卡病毒暴发等事件，严重影响公共卫生和全球经济的发展。造成人群中暴发的新发病毒主要来源于野生动物宿主，明确新发病毒的起源、跨宿主传播、以及在人群中的进化规律至关重要。这是切断病毒传播途径，实现有效监测，指导药物治疗与疫苗开发的前提与基础，具有重要的科学价值和现实意义。刘翟研究员专注于病毒进化与传播规律研究，利用病毒基因组学和生物信息学作为主要研究手段，重点面向病毒起源、进化模型、遗传变异和传播动力学等科学问题。在包括禽流感、埃博拉等重要病毒的起源进化和遗传变异研究领域取得了重要研究成果；在病毒精准溯源、基因动态重配与传播、以及病毒宿主内进化等研究方向上取得了重要突破；提出了新发病毒进化新的理论和模型。

   

071021-生物信息学
071005-微生物学

病原生物学
生物信息学
进化生物学

2000-09--2005-07   北京大学   博士
1996-09--2000-07   北京大学   理学学士

博士研究生

生物信息学 博士

   

2017-07~现在, 中国科学院武汉病毒所, 研究员
2016-09~现在, 中国科学院大学, 教授
2014-07~2017-06,中国科学院微生物研究所, 研究员
2011-07~2014-07,中国科学院微生物研究所, 副研究员
2009-07~2011-07,中国科学院微生物研究所, 助理研究员
2005-12~2009-07,中国科学院微生物研究所, 博士后

2017-11-12-今,中国医疗促进会分子诊断学分会, 常务委员
2017-03-01-今,国际应急管理协会亚太卫生应急专业委员会, 常务委员
2017-01-01-今,Virologica Sinica, 编委
2016-11-01-今,中国微生物学会生物安全专业委员会, 副主任委员
2015-01-01-今,Infectious Disease and Translational Medicine, 副主编
2013-08-01-今,中国遗传学会青年委员会, 委员

病原基因组学
生物信息学
微生物学前沿-微生物生物信息学及组学研究

   

（1） 中华预防医学会科学技术奖, 一等奖, 其他, 2017
（2） 国家科学技术进步特等奖, 特等奖, 国家级, 2017
（3） 中华预防医学会科学技术一等奖, 一等奖, 部委级, 2017
（4） 山东省高等学校科学技术奖, 一等奖, 省级, 2016
（5） 科技部2015中国十大科技进展, 部委级, 2015

[1] 伊成器, 刘翟. 一种病原体宏转录组测序文库的制备方法、试剂盒及筛选感染病原体的方法和装置. CN: CN114645330A, 2022-06-21.
[2] 刘翟, 张翼飞, 贾李佳, 王海华, 刘海舟, 张东裔, 张心怡. 一种基于寡核苷酸芯片杂交的信息存储方法. CN: CN114093401A, 2022-02-25.
[3] 刘翟, 陈全姣, 马莉萍. 尼帕病毒检测试剂盒及其专用引物. CN: CN109022621B, 2020-12-11.
[4] 袁静, 蒋栋, 刘翟, 陈晨, 闫超, 薛冠华, 马莉萍, 曾辉. 用于检测黄热病毒疫苗株的RT-LAMP试剂盒及其专用引物和应用. CN: CN111424116A, 2020-07-17.
[5] 袁静, 刘翟, 陈晨, 马莉萍, 崔晶花, 李少丽, 曾辉, 蒋栋. 用于检测黄热病毒的RT-LAMP试剂盒及其专用引物. CN: CN111139316A, 2020-05-12.
[6] 薛晨玉, 刘翟, 袁静, 李伟, 闫超, 王丹, 汪启, 李南南, 宋丽萍. 一种单核细胞增生李斯特氏菌的多位点基因分型方法. CN: CN110592189A, 2019-12-20.

近五年来，本人的研究工作系统揭示了禽流感和埃博拉等病毒的遗传与传播规律，共发表研究论文46篇；其中作为通讯作者或第一作者在Lancet, Nature, Cell Host & Microbe，Nature Microbiology，Nature Communications等科学杂志发表SCI论文18篇，单篇论文最高他引251次。2016年以通讯作者身份分别在Cell Host & Microbe和Nature Microbiology杂志发表封面文章。研究论文近五年总引用超过2200次，他引约1800次，H-index：27。

[1] Yi Yan, Decheng Wang, Ying Li, Zhiyong Wu, Haizhou Liu, Yue Shi, Xiaoxia Lu, Di Liu. Prevalence, variation, and transmission patterns of human respiratory syncytial virus from pediatric patients in Hubei, China during 2020–2021. VIROLOGICA SINICA[J]. 2023, 38(3): 363-372, http://dx.doi.org/10.1016/j.virs.2023.05.001.
[2] Yu, Qiong, Tong, Xi, Zuo, Li, Tao, Xinyu, Xu, Zhonghui, Li, Xiaocui, Liu, Haizhou, Guan, Wuxiang, Liu, Di, Liu, Haibin, Huang, Fang, Jia, Lijia. Genomic Surveillance of SARS-CoV-2 Variants That Emerged in South and Southeast Asia during Early 2022. VIRUSES-BASEL[J]. 2023, 15(6): http://dx.doi.org/10.3390/v15061355.
[3] Bangyao Sun, Ming Ni, Haizhou Liu, Di Liu. Viral intra-host evolutionary dynamics revealed via serial passage of Japanese encephalitis virus in vitro. VIRUS EVOLUTION[J]. 2023, 9(1): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10185921/.
[4] Jia, Lijia, Xu, Meng, Hao, Mengchan, Liu, Di, Liu, Haizhou, Zheng, Xin, Chen, Jianjun. Comparison of microbial composition and diversity in the upper respiratory tract between SARS-CoV-2 and influenza virus infections. SCIENCE CHINA-LIFE SCIENCES[J]. 2022, 65(7): 1469-1472, http://dx.doi.org/10.1007/s11427-021-2092-1.
[5] Qin, Tian, Zhao, Dahui, Zhu, Li, Ren, Hongyu, Li, Yinan, Liu, Xinjun, Li, Xiaopeng, Li, Wei, Zhao, Na, Lu, Jiao, Liu, Di, Shi, Yi, Fang, Min, Duan, Xuefeng. Legionella pneumophila Risk from Cooling Tower Systems in China. APPLIED AND ENVIRONMENTAL MICROBIOLOGY[J]. 2022, 88(3): http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000758411000016.
[6] 伍智勇, 徐孟, 贾李佳, 曹影, 刘翟, 刘海舟. 病毒和病毒病转录组学方法与应用. 中华实验和临床病毒学杂志[J]. 2022, 36(3): 346-353, http://lib.cqvip.com/Qikan/Article/Detail?id=7107697100.
[7] Fan, Wenhui, Cao, Ying, Jiao, Pengtao, Yu, Ping, Zhang, He, Chen, Teng, Zhou, Xintao, Qi, Yu, Sun, Lei, Liu, Di, Zhu, Hongfei, Liu, Wenjun, Hu, Rongliang, Li, Jing. Synergistic effect of the responses of different tissues against African swine fever virus. TRANSBOUNDARY AND EMERGING DISEASES[J]. 2022, 69(4): E204-E215, http://dx.doi.org/10.1111/tbed.14283.
[8] 于艳雪, 汪启, 周萍, 律娜, 李伟, 赵方庆, 朱水芳, 刘翟. First Glimpse of Gut Microbiota of Quarantine Insects in China.. 基因组蛋白质组与生物信息学报[J]. 2022, [9] Jie Min, Ying Cao, Haizhou Liu, Di Liu, Wenjun Liu, Jing Li. RNA Sequencing Demonstrates That Circular RNA Regulates Avian Influenza Virus Replication in Human Cells. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES[J]. 2022, 23(17): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9456167/.
[10] Yu, Fang, Liu, Liqiang, Tian, Xiaoxiao, Chen, Ligong, Huang, Xinyi, Sun, Yue, Yan, Yi, Tian, Zhijun, Cai, Xuehui, Liu, Di, An, Tongqing. Genomic Analysis of Porcine Reproductive and Respiratory Syndrome Virus 1 Revealed Extensive Recombination and Potential Introduction Events in China. VETERINARY SCIENCES[J]. 2022, 9(9): http://dx.doi.org/10.3390/vetsci9090450.
[11] Cao, Ying, Liu, Haizhou, Liu, Di, Liu, Wenjun, Luo, Tingrong, Li, Jing. Hemagglutinin Gene Variation Rate of H9N2 Avian Influenza Virus by Vaccine Intervention in China. VIRUSES-BASEL[J]. 2022, 14(5): http://dx.doi.org/10.3390/v14051043.
[12] Cai, Meina, Liu, Haizhou, Jiang, Fei, Sun, Yeqing, Wang, Wenbo, An, Yimeng, Zhang, Mengyi, Li, Xueli, Liu, Di, Li, Yuhua, Yu, Yongxin, Huang, Weijin, Wang, Youchun. Analysis of the evolution, infectivity and antigenicity of circulating rabies virus strains. EMERGING MICROBES & INFECTIONS[J]. 2022, 11(1): 1474-1487, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000804444700001.
[13] Tian, Xiaodong, Bai, Zhihua, Cao, Ying, Liu, Haizhou, Liu, Di, Liu, Wenjun, Li, Jing. Evaluation of Clinical and Immune Responses in Recovered Children with Mild COVID-19. VIRUSES-BASEL[J]. 2022, 14(1): [14] 徐孟, 吴珂, 伍智勇, 刘翟, 刘海舟. 戊型肝炎病毒基因分型研究进展. 中国病毒病杂志[J]. 2022, 12(2): 138-143, http://lib.cqvip.com/Qikan/Article/Detail?id=7107664369.
[15] Jia, Lijia, Liang, Bilin, Wu, Ke, Wang, Runkun, Liu, Haizhou, Liu, Di, Chen, Quanjiao. Circulation, genomic characteristics, and evolutionary dynamics of class I Newcastle disease virus in China. VIRULENCE[J]. 2022, 13(1): 414-427, http://dx.doi.org/10.1080/21505594.2022.2037342.
[16] Wu, Jun, Liang, Boyun, Chen, Cunrong, Wang, Hua, Fang, Yaohui, Shen, Shu, Yang, Xiaoli, Wang, Baoju, Chen, Liangkai, Chen, Qi, Wu, Yang, Liu, Jia, Yang, Xuecheng, Li, Wei, Zhu, Bin, Zhou, Wenqing, Wang, Huan, Li, Sumeng, Lu, Sihong, Liu, Di, Li, Huadong, Krawczyk, Adalbert, Lu, Mengji, Yang, Dongliang, Deng, Fei, Dittmer, Ulf, Trilling, Mirko, Zheng, Xin. SARS-CoV-2 infection induces sustained humoral immune responses in convalescent patients following symptomatic COVID-19. NATURE COMMUNICATIONS[J]. 2021, 12(1): https://doaj.org/article/87b5e3b2d655425da4c2ff45fb7884d0.
[17] Liu, William J, Xiao, Haixia, Dai, Lianpan, Liu, Di, Chen, Jianjun, Qi, Xiaopeng, Bi, Yuhai, Shi, Yi, Gao, George F, Liu, Yingxia. Avian influenza A (H7N9) virus: from low pathogenic to highly pathogenic. FRONTIERS OF MEDICINE[J]. 2021, 15(4): 507-527, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8190734/.
[18] Zhu, Zhenglin, Liu, Gexin, Meng, Kaiwen, Yang, Liuqing, Liu, Di, Meng, Geng. Rapid Spread of Mutant Alleles in Worldwide SARS-CoV-2 Strains Revealed by Genome-Wide Single Nucleotide Polymorphism and Variation Analysis. GENOME BIOLOGY AND EVOLUTION[J]. 2021, 13(2): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7883668/.
[19] 刘翟. Ginseng polysaccharides alter the gut microbiota and kynurenine/tryptophan ratio, potentiating the antitumour effect of antiprogrammed cell death 1/programmed cell death ligand 1 (anti-PD-1/PD-L1) immunotherapy. Gut. 2021, [20] Lu, Bo, Yan, Yi, Dong, Liting, Han, Lingling, Liu, Yawei, Yu, Junping, Chen, Jianjun, Yi, Danyang, Zhang, Meiling, Deng, Xin, Wang, Chao, Wang, Runkun, Wang, Dengpeng, Wei, Hongping, Liu, Di, Yi, Chengqi. Integrated characterization of SARS-CoV-2 genome, microbiome, antibiotic resistance and host response from single throat swabs. CELL DISCOVERY[J]. 2021, 7(1): https://doaj.org/article/5bf9b36cf827428a89748b3bdd3c53a2.
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[22] Decheng Wang, Mingxin Li, Chaochao Xiong, Yi Yan, Juefu Hu, Mengchan Hao, Bilin Liang, Jing Chen, Guang Chen, Guoxiang Yang, Yong Li, Jun Zhang, Marina Gulyaeva, Alexander Shestopalov, Weifeng Shi, Yuhai Bi, Haizhou Liu, Hanzhong Wang, Di Liu, Jianjun Chen. Ecology of avian influenza viruses in migratory birds wintering within the Yangtze River wetlands. SCIENCE BULLETIN[J]. 2021, 66(19): 2014-2024, [23] Aqian Li, Lin Liu, Wei Wu, Yang Liu, Xiaoxia Huang, Chuan Li, Di Liu, Jiandong Li, Shiwen Wang, Dexin Li, Mifang Liang. Molecular evolution and genetic diversity analysis of SFTS virus based on next-generation sequencing. 生物安全与健康(英文)[J]. 2021, 3(2): 105-115, http://lib.cqvip.com/Qikan/Article/Detail?id=7105403337.
[24] Liu, Qing, Li, Wei, Liu, Di, Li, Lingyan, Li, Jie, Lv, Na, Liu, Fei, Zhu, Baoli, Zhou, Yuguang, Xin, Yuhua, Dong, Xiuzhu. Light stimulates anoxic and oligotrophic growth of glacial Flavobacterium strains that produce zeaxanthin. ISME JOURNAL[J]. 2021, 15(6): 1844-1857, http://dx.doi.org/10.1038/s41396-020-00891-w.
[25] Jia, Lijia, Chen, Jianjun, Liu, Haizhou, Fan, Wenhui, Wang, Depeng, Li, Jing, Liu, Di. Potential m6A and m5C Methylations within the Genome of A Chinese African Swine Fever Virus Strain. VIROLOGICA SINICAnull. 2021, 36(2): 321-324, http://lib.cqvip.com/Qikan/Article/Detail?id=7104879089.
[26] Wang, Miao, Wang, Liying, Liu, Haizhou, Chen, Jianjun, Liu, Di. Transcriptome Analyses Implicate Endogenous Retroviruses Involved in the Host Antiviral Immune System through the Interferon Pathway. VIROLOGICA SINICA[J]. 2021, 36(6): 1315-1326, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=7131898&detailType=1.
[27] Li, YanHong, Cao, Ying, Liu, Fen, Zhao, Qian, Adi, Dilare, Huo, Qiang, Liu, Zheng, Luo, JunYi, Fang, BinBin, Tian, Ting, Li, XiaoMei, Liu, Di, Yang, YiNing. Visualization and Analysis of Gene Expression in Stanford Type A Aortic Dissection Tissue Section by Spatial Transcriptomics. FRONTIERS IN GENETICS[J]. 2021, 12: http://dx.doi.org/10.3389/fgene.2021.698124.
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[29] Huang, Min, Lu, QingBin, Zhao, Han, Zhang, Yulan, Sui, Zhiwei, Fang, Liqun, Liu, Di, Sun, Xiulian, Peng, Ke, Liu, Wei, Guan, Wuxiang. Temporal antibody responses to SARS-CoV-2 in patients of coronavirus disease 2019. CELL DISCOVERY. 2020, 6(1): http://dx.doi.org/10.1038/s41421-020-00209-2.
[30] Yu, Fang, Yan, Yi, Shi, Mang, Liu, HaiZhou, Zhang, HongLiang, Yang, YongBo, Huang, XinYi, Gauger, Phillip C, Zhang, Jianqiang, Zhang, YanHe, Tong, GuangZhi, Tian, ZhiJun, Chen, JianJun, Cai, XueHui, Liu, Di, Li, Ganwu, An, TongQing. Phylogenetics, Genomic Recombination, and NSP2 Polymorphic Patterns of Porcine Reproductive and Respiratory Syndrome Virus in China and the United States in 2014-2018. JOURNAL OF VIROLOGY[J]. 2020, 94(6): http://dx.doi.org/10.1128/JVI.01813-19.
[31] Cao, Ying, Sun, Yeping, Tian, Xiaodong, Bai, Zhihua, Gong, Yue, Qi, Jianxun, Liu, Di, Liu, Wenjun, Li, Jing, 巩玥. Analysis of ACE2 Gene-Encoded Proteins Across Mammalian Species. FRONTIERS IN VETERINARY SCIENCE[J]. 2020, 7: https://doaj.org/article/ac2208b05d1c4b098eb991a70552c8dd.
[32] Jia, Lijia, Jiang, Mengwei, Wu, Ke, Hu, Juefu, Wang, Yang, Quan, Weipeng, Hao, Mengchan, Liu, Haizhou, Wei, Hongping, Fan, Wenhui, Liu, Wenjun, Hu, Rongliang, Wang, Depeng, Li, Jing, Chen, Jianjun, Liu, Di. Nanopore sequencing of African swine fever virus. SCIENCE CHINA-LIFE SCIENCES[J]. 2020, 63(1): 160-164, http://lib.cqvip.com/Qikan/Article/Detail?id=7100908169.
[33] Wang, Miao, Qiu, Yang, Liu, Haizhou, Liang, Bilin, Fan, Baofeng, Zhou, Xi, Liu, Di. Transcription profile of human endogenous retroviruses in response to dengue virus serotype 2 infection. VIROLOGY[J]. 2020, 544: 21-30, http://dx.doi.org/10.1016/j.virol.2020.01.014.
[34] Du, Pengcheng, Ding, Nan, Li, Jiarui, Zhang, Fujie, Wang, Qi, Chen, Zhihai, Song, Chuan, Han, Kai, Xie, Wen, Liu, Jingyuan, Wang, Linghang, Wei, Lirong, Ma, Shanfang, Hua, Mingxi, Yu, Fengting, Wang, Lin, Wang, Wei, An, Kang, Chen, Jianjun, Liu, Haizhou, Gao, Guiju, Wang, Sa, Huang, Yanyi, Wu, Angela R, Wang, Jianbin, Liu, Di, Zeng, Hui, Chen, Chen. Genomic surveillance of COVID-19 cases in Beijing. NATURE COMMUNICATIONS[J]. 2020, 11(1): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7603498/.
[35] 刘翟. 基因组——了解新型冠状病毒的最直接手段. 结核病与肺部健康杂志[J]. 2020, 9(1): 16-18, http://lib.cqvip.com/Qikan/Article/Detail?id=7101623310.
[36] 曹影, 李伟, 褚鑫, 吴珂, 刘海舟, 刘翟. 单分子纳米孔测序技术及其应用研究进展. 生物工程学报[J]. 2020, 36(5): 811-819, http://lib.cqvip.com/Qikan/Article/Detail?id=7101937131.
[37] 袁静, Chen, Chen, Jinghua, Cui, Jing, Lu, Chao, Yan, Xiao, Wei, Xiangna, Zhao, NanNan, Li, Shaoli, Li, Guanhua, Xue, Weiwei, Cheng, Boxing, Li, Huan, Li, Weishi, Lin, Changyu, Tian, Jiangtao, Zhao, Juqiang, Han, Daizhi, An, Qiong, Zhang, Hong, Wei, Minghua, Zheng, Xuejun, Ma, Wei, Li, Xiao, Chen, Zheng, Zhang, Hui, Zeng, Sun, Ying, JianXin, Wu, Ruifu, Yang, 刘翟. 高产酒精肺炎克雷伯菌引起的非酒精性脂肪肝病. 科学新闻[J]. 2020, 54-, http://lib.cqvip.com/Qikan/Article/Detail?id=7102181329.
[38] Bangyao Sun, Xin Zhang, Huan Zhang, Haizhou Liu, Lina Sun, Qiqi Tan, Mifang Liang, De Wu, Di Liu. Genomic epidemiological characteristics of dengue fever in Guangdong province, China from 2013 to 2017. PLOS NEGLECTED TROPICAL DISEASES[J]. 2020, 14(3): http://dx.doi.org/10.1371/journal.pntd.0008049.
[39] Zhou, Hong, Chen, Xing, Hu, Tao, Li, Juan, Song, Hao, Liu, Yanran, Wang, Peihan, Liu, Di, Yang, Jing, Holmes, Edward C, Hughes, Alice C, Bi, Yuhai, Shi, Weifeng. A Novel Bat Coronavirus Closely Related to SARS-CoV-2 Contains Natural Insertions at the S1/S2 Cleavage Site of the Spike Protein. CURRENT BIOLOGY[J]. 2020, 30(11): 2196-+, http://dx.doi.org/10.1016/j.cub.2020.05.023.
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（1） Molecular Epidemiology of the Human-Infecting Influenza A Virus (H7N9) and its Potential to the Pandemics, Nova Science Publishers, 2014-10, 第 1 作者

   

（ 1 ） 国家生物安全监测网络系统集成技术研究, 主持, 国家级, 2016-07--2018-12
（ 2 ） 利用大数据信息挖掘和基因进化方法研究禽流感病毒的跨地域传播, 主持, 国家级, 2015-01--2018-12
（ 3 ） 中俄地区野鸟中禽流感病毒调查与系统发生研究, 主持, 部委级, 2015-01--2015-12
（ 4 ） 中国科学院流感专项研究项目, 参与, 部委级, 2013-05--2014-12
（ 5 ） 中国生命条形码数据库建立, 主持, 国家级, 2012-05--2017-05
（ 6 ） DNA条形码信息系统构建, 主持, 国家级, 2011-06--2016-05
（ 7 ） 细胞感染模型中RNA病毒的准种微进化理论和方法学研究, 主持, 国家级, 2017-01--2018-12

（1）Pathogen Genomics and Evolution   第三届亚太微生物应急体系建设及医改策略国际大会   2017-03-30
（2）Intra-host dynamics of Ebola virus   2015-10-16
（3）Intra-host dynamics of Ebola virus   中美科学院联合会议   2015-09-25

现指导学生

贾李佳  硕士研究生  071010-生物化学与分子生物学  

王德诚  博士研究生  071010-生物化学与分子生物学  

孙邦耀  博士研究生  071005-微生物学