基本信息
张耀阳  男  博导  中国科学院上海有机化学研究所
电子邮件: zyy@sioc.ac.cn
通信地址: 上海市零陵路345号
邮政编码:

招生信息

   
招生专业
071010-生物化学与分子生物学
070302-分析化学
071009-细胞生物学
招生方向
蛋白质组学
质谱新技术与新方法
质谱数据分析和系统生物学

专利与奖励

   
专利成果
[1] 阿司匹林或其衍生物用于治疗α-突触核蛋白异常聚集相关疾病的用途. 2023-07-13.

[2] 一种交联多肤的分析鉴定方法. 2021-06-03.

[3] 张耀阳, 高婧, 何凯雯. 阿司匹林或其衍生物用于治疗α-突触核蛋白异常聚集相关疾病的用途. 202310860259.2, 2023-07-13.

[4] 张耀阳, 强佳丽. 一种交联多肽的分析鉴定方法. CN: CN115436495A, 2022-12-06.

[5] 刘南, 张耀阳. 组蛋白H2A泛素化的用途. CN: CN110596394A, 2019-12-20.

[6] 张耀阳, 郭琳. 对硒代半胱氨酸进行修饰的方法及其应用. CN: CN110763530B, 2021-11-02.

出版信息

   
发表论文
[1] Rui Guo, JianPing Liu, Xia Min, Wen Zeng, Bing Shan, Mengmeng Zhang, Zhuohao He, Yaoyang Zhang, Kaiwen He, Junying Yuan, Daichao Xu. Reduction of DHHC5-mediated beclin 1 S-palmitoylation underlies autophagy decline in aging. Nat Struct Mol Biol[J]. 2024, 第 8 作者
[2] Bo Yang, Wentao Zhang, Le Sun, Bin Lu, Changsong Yin, Yaoyang Zhang, Hong Jiang. Creatine kinase brain-type regulates BCAR1 phosphorylation to facilitate DNA damage repair. ISCIENCE[J]. 2023, 第 6 作者26(5): 106684, https://doaj.org/article/9b8d4acb3bc54dc19765e6dff456806b.
[3] Heng Lyu, Le Sun, Zhenyu Guan, Jinxin Li, Changsong Yin, Yaoyang Zhang, Hong Jiang. Proximity labeling reveals OTUD3 as a DNA-binding deubiquitinase of cGAS. CELL REPORTS. 2023, 第 6 作者42(4): http://dx.doi.org/10.1016/j.celrep.2023.112309.
[4] Sha Tian, Dongdong Zhan, Ying Yu, Yunzhi Wang, Mingwei Liu, Subei Tan, Yan Li, Lei Song, Zhaoyu Qin, Xianju Li, Yang Liu, Yao Li, Shuhui Ji, Shanshan Wang, , Yuanting Zheng, Fuchu He, Jun Qin, Chen Ding. Quartet protein reference materials and datasets for multi-platform assessment of label-free proteomics. GENOME BIOLOGY[J]. 2023, 24(1): 1-31, http://dx.doi.org/10.1186/s13059-023-03048-y.
[5] Li JingShu, Ye Cao, Yun Yang, Huanhuan Ma, Jing Zhao, Yaoyang Zhang, Nan Liu. Quantitative Acetylomics Reveals Substrates of Lysine Acetyltransferase GCN5 in Adult and Aging Drosophila. J Proteome Res[J]. 2023, 第 6 作者  通讯作者  
[6] Ni, Jiangxia, Ren, Yongfei, Su, Tonghui, Zhou, Jia, Fu, Chaoying, Lu, Yi, Li, Dean, Zhao, Jing, Li, Yunxia, Zhang, Yaoyang, Fang, Yanshan, Liu, Nan, Geng, Yang, Chen, Yelin. Loss of TDP-43 function underlies hippocampal and cortical synaptic deficits in TDP-43 proteinopathies. MOLECULAR PSYCHIATRY[J]. 2023, 第 10 作者28(2): 931-945, http://dx.doi.org/10.1038/s41380-021-01346-0.
[7] Lou, Ronghui, Cao, Ye, Li, Shanshan, Lang, Xiaoyu, Li, Yunxia, Zhang, Yaoyang, Shui, Wenqing. Benchmarking commonly used software suites and analysis workflows for DIA proteomics and phosphoproteomics. NATURE COMMUNICATIONS[J]. 2023, 第 6 作者  通讯作者  14(1): http://dx.doi.org/10.1038/s41467-022-35740-1.
[8] Wu, Xiaofen, Niu, Kongyan, Wang, Xiaofan, Zhao, Jing, Wang, Han, Li, Dean, Wang, Hui, Miao, Ting, Yang, Yun, Ma, Huanhuan, Zhang, Yaoyang, Pan, Lei, Liu, Rui, Bai, Hua, Liu, Nan. microRNA-252 and FoxO repress inflammaging by a dual inhibitory mechanism on Dawdle-mediated TGF-beta pathway in Drosophila. GENETICS[J]. 2022, 第 11 作者220(3): http://dx.doi.org/10.1093/genetics/iyab234.
[9] Chonghe Zhang, Hao He, Jianing Dai, Yunxia Li, Jing He, Wu Yang, Jialin Dai, Feng Han, Wenyan Kong, Xiaohong Wang, Xiangjian Zheng, Jing Zhou, Weijun Pan, Zhongwen Chen, Mahak Singhal, Yaoyang Zhang, Feng Guo, Junhao Hu. KANK4 Promotes Arteriogenesis by Potentiating VEGFR2 Signaling in a TALIN-1-Dependent Manner. Arterioscler Thromb Vasc Biol[J]. 2022, 第 16 作者42(6): 772-788, 
[10] Li, Jingshu, Cao, Ye, Niu, Kongyan, Qiu, Jiaqian, Wang, Han, You, Yingnag, Li, Dean, Luo, Yu, Zhu, Zhengjiang, Zhang, Yaoyang, Liu, Nan. Quantitative Acetylomics Reveals Dynamics of Protein Lysine Acetylation in Mouse Livers During Aging and Upon the Treatment of Nicotinamide Mononucleotide. MOLECULAR & CELLULAR PROTEOMICS[J]. 2022, 第 10 作者  通讯作者  21(9): http://dx.doi.org/10.1016/j.mcpro.2022.100276.
[11] Yingjie Hou, Heng Lu, Jinxin Li, Zhenyu Guan, Jianan Zhang, Wentao Zhang, Changsong Yin, Le Sun, Yaoyang Zhang, Hong Jiang. A photoaffinity labeling strategy identified EF1A1 as a binding protein of cyclic dinucleotide 2′3′-cGAMP. CELL CHEMICAL BIOLOGY. 2022, 第 9 作者29(1): 133-144.e20, 
[12] Fan, Yun, Zhao, Qinyue, Xia, Wencheng, Tao, Youqi, Yu, Wenbo, Chen, Mingjia, Liu, Yiqi, Zhao, Jue, Shen, Yan, Sun, Yunpeng, Si, Chenfang, Zhang, Shenqing, Zhang, Yaoyang, Li, Wensheng, Liu, Cong, Wang, Jian, Li, Dan. Generic amyloid fibrillation of TMEM106B in patient with Parkinson's disease dementia and normal elders. CELL RESEARCH[J]. 2022, 第 13 作者32(6): 585-588, http://dx.doi.org/10.1038/s41422-022-00665-3.
[13] Sun, Le, Yan, Yu, Lv, Heng, Li, Jianlong, Wang, Zhiyuan, Wang, Kun, Wang, Lin, Li, Yunxia, Jiang, Hong, Zhang, Yaoyang. Rapamycin targets STAT3 and impacts c-Myc to suppress tumor growth. CELL CHEMICAL BIOLOGY[J]. 2022, 第 10 作者  通讯作者  29(3): 373-+, http://dx.doi.org/10.1016/j.chembiol.2021.10.006.
[14] Wang, Linhan, Li, Jiqiang, Wang, Qingchen, Ge, ManXi, Ji, Jia, Liu, Di, Wang, Zhiyua, Cao, Yang, Zhang, Yaoyang, Zhang, ZaiRong. TMUB1 is an endoplasmic reticulum-resident escortase that promotes the p97-mediated extraction of membrane proteins for degradation. MOLECULAR CELL[J]. 2022, 第 9 作者82(18): 3453-+, http://dx.doi.org/10.1016/j.molcel.2022.07.006.
[15] Huang, Chengan, Lu, Jinxia, Ma, Xiaojuan, Qiang, Jiali, Wang, Chuchu, Liu, Cong, Fang, Yanshan, Zhang, Yaoyang, Jiang, Lin, Li, Dan, Zhang, Shengnan. The mouse nicotinamide mononucleotide adenylyltransferase chaperones diverse pathological amyloid client proteins. JOURNAL OF BIOLOGICAL CHEMISTRY[J]. 2022, 第 8 作者298(5): http://dx.doi.org/10.1016/j.jbc.2022.101912.
[16] Qiang, Jiali, Xu, Zhimin, Li, Yunxia, Wang, Hongbin, Zhang, Yaoyang. Carboxypeptidase Y Assisted Disulfide-Bond Identification with Linearized Database Search. ANALYTICAL CHEMISTRY[J]. 2021, 第 5 作者  通讯作者  93(45): 14940-14945, http://dx.doi.org/10.1021/acs.analchem.1c03932.
[17] Haoyan Wang, Yixin Zhang, Kaixing Zeng, Jiali Qiang, Ye Cao, Yunxia Li, Yanshan Fang, Yaoyang Zhang, Yiyun Chen. Selective Mitochondrial Protein Labeling Enabled by Biocompatible Photocatalytic Reactions inside Live Cells. JACS AU[J]. 2021, 第 8 作者  通讯作者  1(7): https://doaj.org/article/12928db9b863482b89181164074a7a32.
[18] Li, Shanshan, Luo, Huoqing, Lou, Ronghui, Tian, Cuiping, Miao, Chen, Xia, Lisha, Pan, Chen, Duan, Xiaoxiao, Dang, Ting, Li, Hui, Fan, Chengyu, Tang, Pan, Zhang, Zhuangzhuang, Liu, Yan, Li, Yunxia, Xu, Fei, Zhang, Yaoyang, Zhong, Guisheng, Hu, Ji, Shui, Wenqing. Multiregional profiling of the brain transmembrane proteome uncovers novel regulators of depression. SCIENCE ADVANCES[J]. 2021, 第 17 作者7(30): http://dx.doi.org/10.1126/sciadv.abf0634.
[19] MinMin Lou, XiaoQiang Tang, GuangMing Wang, Jia He, Fang Luo, MingFeng Guan, Fei Wang, Huan Zou, JunYing Wang, Qun Zhang, MingJian Xu, QiLi Shi, LiBing Shen, GuoMing Ma, Yi Wu, YaoYang Zhang, Aibin Liang, TingHua Wang, LiuLin Xiong, Jian Wang, Jun Xu, WenYuan Wang. Long noncoding RNA BS-DRL1 modulates the DNA damage response and genome stability by interacting with HMGB1 in neurons. NATURE COMMUNICATIONS[J]. 2021, 第 16 作者12(1): http://dx.doi.org/10.1038/s41467-021-24236-z.
[20] Ni, Jiangxia, Ren, Yongfei, Su, Tonghui, Zhou, Jia, Fu, Chaoying, Lu, Yi, Li, Dean, Zhao, Jing, Li, Yunxia, Zhang, Yaoyang, Fang, Yanshan, Liu, Nan, Geng, Yang, Chen, Yelin. Loss of TDP-43 function underlies hippocampal and cortical synaptic deficits in TDP-43 proteinopathies. MOLECULAR PSYCHIATRY. 2021, 第 10 作者
[21] Rui Zu, Zhen Yu, Jing Zhao, Xiaojuan Lu, Wei Liang, Le Sun, Chenfang Si, Kezhou Zhu, Tian Zhang, Ganquan Li, Mengmeng Zhang, Yaoyang Zhang, Nan Liu, Junying Yuan, Bing Shan. Quantitative analysis of phosphoproteome in necroptosis reveals a role of TRIM28 phosphorylation in promoting necroptosis-induced cytokine production. CELL DEATH & DISEASE. 2021, 第 0 作者12(11): 
[22] Zhang, Kai, Wang, Qingyao, Liang, Yiyao, Yan, Yu, Wang, Haiqiong, Cao, Xu, Shan, Bing, Zhang, Yaoyang, Li, Ang, Fang, Yanshan. Quantitative Proteomic Analysis of Mouse Sciatic Nerve Reveals Post-injury Upregulation of ADP-Dependent Glucokinase Promoting Macrophage Phagocytosis. FRONTIERS IN MOLECULAR NEUROSCIENCE[J]. 2021, 第 8 作者  通讯作者  14: http://dx.doi.org/10.3389/fnmol.2021.777621.
[23] Zhang, Lin, Wang, Zewei, Wang, Zhiyuan, Luo, Fang, Guan, Mingfeng, Xu, Meimei, Li, Yundong, Zhang, Yaoyang, Wang, Zhaoyin, Wang, Wenyuan. A Simple and Efficient Method to Generate Dual Site-Specific Conjugation ADCs with Cysteine Residue and an Unnatural Amino Acid. BIOCONJUGATE CHEMISTRY[J]. 2021, 第 8 作者32(6): 1094-1104, http://dx.doi.org/10.1021/acs.bioconjchem.1c00134.
[24] Wang, Zhiyuan, Liu, Hua, Yan, Yu, Yang, Xiangyun, Zhang, Yaoyang, Wu, Linshi. Integrated Proteomic and N-Glycoproteomic Analyses of Human Breast Cancer. JOURNAL OF PROTEOME RESEARCH[J]. 2020, 第 5 作者  通讯作者  19(8): 3499-3509, https://www.webofscience.com/wos/woscc/full-record/WOS:000562081000054.
[25] Sun, Yunpeng, Hou, Shouqiao, Zhao, Kun, Long, Houfang, Liu, Zhenying, Gao, Jing, Zhang, Yaoyang, Su, XiaoDong, Li, Dan, Liu, Cong. Cryo-EM structure of full-length alpha-synuclein amyloid fibril with Parkinson's disease familial A53T mutation. CELL RESEARCH. 2020, 第 7 作者30(4): 360-362, http://dx.doi.org/10.1038/s41422-020-0299-4.
[26] Ma, Xiaojuan, Zhu, Yi, Lu, Jinxia, Xie, Jingfei, Li, Chong, Shin, Woo Shik, Qiang, Jiali, Liu, Jiaqi, Dou, Shuai, Xiao, Yi, Wang, Chuchu, Jia, Chunyu, Long, Houfang, Yang, Juntao, Fang, Yanshan, Jiang, Lin, Zhang, Yaoyang, Zhang, Shengnan, Zhai, Rong Grace, Liu, Cong, Li, Dan. Nicotinamide mononucleotide adenylyltransferase uses its NAD(+) substrate-binding site to chaperone phosphorylated Tau. ELIFE[J]. 2020, 第 17 作者9: https://doaj.org/article/7a6c38a74c5f4d10ba956531826059aa.
[27] Hu, Xianyan, Wang, Linhan, Wang, Yuancai, Ji, Jia, Li, Jiqiang, Wang, Zhiyuan, Li, Congcong, Zhang, Yaoyang, Zhang, ZaiRong. RNF126-Mediated Reubiquitination Is Required for Proteasomal Degradation of p97-Extracted Membrane Proteins. MOLECULAR CELL[J]. 2020, 第 8 作者79(2): 320-+, http://dx.doi.org/10.1016/j.molcel.2020.06.023.
[28] Yunpeng Sun, Shouqiao Hou, Kun Zhao, Houfang Long, Zhenying Liu, Jing Gao, Yaoyang Zhang, XiaoDong Su, Dan Li, Cong Liu. Cryo-EM structure of full-length α-synuclein amyloid fibril with Parkinson’s disease familial A53T mutation. 细胞研究:英文版[J]. 2020, 第 7 作者30(4): 360-362, http://lib.cqvip.com/Qikan/Article/Detail?id=7102027827.
[29] Guo, Lin, Gao, Jing, Gao, Yang, Zhu, Zhengjiang, Zhang, Yaoyang. Aspirin Reshapes Acetylomes in Inflammatory and Cancer Cells via CoA-Dependent and CoA-Independent Pathways. JOURNAL OF PROTEOME RESEARCH[J]. 2020, 第 5 作者  通讯作者  19(2): 962-972, https://www.webofscience.com/wos/woscc/full-record/WOS:000513085100035.
[30] Dai, Jialin, Zhang, Chonghe, Guo, Lin, He, Hao, Jiang, Kai, Huang, Yingying, Zhang, Xixi, Zhang, Haibing, Wei, Wu, Zhang, Yaoyang, Lu, Lihua, Hu, Junhao. A necroptotic-independent function of MLKL in regulating endothelial cell adhesion molecule expression. CELL DEATH & DISEASE[J]. 2020, 第 10 作者11(4): http://dx.doi.org/10.1038/s41419-020-2483-3.
[31] Lou, Ronghui, Tang, Pan, Ding, Kang, Li, Shanshan, Tian, Cuiping, Li, Yunxia, Zhao, Suwen, Zhang, Yaoyang, Shui, Wenqing. Hybrid Spectral Library Combining DIA-MS Data and a Targeted Virtual Library Substantially Deepens the Proteome Coverage. ISCIENCE[J]. 2020, 第 8 作者  通讯作者  23(3): http://dx.doi.org/10.1016/j.isci.2020.100903.
[32] 张耀阳. Multi-omic Analyses Reveal Minimal Impact of the CRISPR-Cas9 Nuclease on Cultured Human Cells. Journal of Proteome Research. 2019, 第 1 作者  通讯作者  
[33] Yang, Lu, Ma, Zaijun, Wang, Han, Niu, Kongyan, Cao, Ye, Sun, Le, Geng, Yang, Yang, Bo, Gao, Feng, Chen, Zuolong, Wu, Zhen, Li, Qingqing, Shen, Yong, Zhang, Xumin, Jiang, Hong, Chen, Yelin, Liu, Rui, Liu, Nan, Zhang, Yaoyang. Ubiquitylome study identifies increased histone 2A ubiquitylation as an evolutionarily conserved aging biomarker. NATURE COMMUNICATIONS[J]. 2019, 第 19 作者  通讯作者  10(1): http://dx.doi.org/10.1038/s41467-019-10136-w.
[34] Duan Yongjia, Du Aiying, Gu Jinge, Duan Gang, Wang Chen, Gui Xinrui, Ma Zhiwei, Qian Beituo, Deng Xue, Zhang Kai, Sun Le, Tian Kuili, Zhang Yaoyang, Jiang Hong, Liu Cong, Fang Yanshan. PARylation regulates stress granule dynamics, phase separation, and neurotoxicity of disease-related RNA-binding proteins. CELL RESEARCH[J]. 2019, 第 13 作者29(3): 233-247, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=6454604&detailType=1.
[35] Yongjia Duan, Aiying Du, Jinge Gu, Gang Duan, Chen Wang, Xinrui Gui, Zhiwei Ma, Beituo Qian, Xue Deng, Kai Zhang, Le Sun, Kuili Tian, Yaoyang Zhang, Hong Jiang, Cong Liu, Yanshan Fang. PARylation regulates stress granule dynamics, phase separation, and neurotoxicity of disease-related RNA-binding proteins. 细胞研究:英文版[J]. 2019, 第 13 作者29(3): 233-247, http://lib.cqvip.com/Qikan/Article/Detail?id=7001759777.
[36] Qiang, Jiali, Ma, Zaijun, Xie, Xingxing, Shi, Linyu, Geng, Yang, Hu, Junhao, Liu, Rui, Liu, Nan, Zhang, Yaoyang. Multi-omit Analyses Reveal Minimal Impact of the CRISPR-Cas9 Nuclease on Cultured Human Cells. JOURNAL OF PROTEOME RESEARCH[J]. 2019, 第 9 作者  通讯作者  18(3): 1054-1063, http://dx.doi.org/10.1021/acs.jproteome.8b00751.
[37] Yang, Lu, Cao, Ye, Zhao, Jing, Fang, Yanshan, Liu, Nan, Zhang, Yaoyang. Multidimensional Proteomics Identifies Declines in Protein Homeostasis and Mitochondria as Early Signals for Normal Aging and Age-associated Disease in Drosophila. MOLECULAR & CELLULAR PROTEOMICS[J]. 2019, 第 6 作者  通讯作者  18(10): 2078-2088, https://www.webofscience.com/wos/woscc/full-record/WOS:000488467400011.
[38] Ma, Zaijun, Wang, Hui, Cai, Yuping, Wang, Han, Niu, Kongyan, Wu, Xiaofen, Ma, Huanhuan, Yang, Yun, Tong, Wenhua, Liu, Feng, Liu, Zhandong, Zhang, Yaoyang, Liu, Rui, Zhu, ZhengJiang, Liu, Nan. Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila. ELIFE[J]. 2018, 第 12 作者7: https://doaj.org/article/9cf7759066d24f918441bcbfdd73a2ff.
[39] Zhang YaoYang, Chen Ling, Ai YinShuang, Jiang MingMing, Xu WeiWei, Shen ZhongYin. Lithospheric structure of the South China Block from S-receiver function. CHINESE JOURNAL OF GEOPHYSICS-CHINESE EDITION[J]. 2018, 第 1 作者61(1): 138-149, https://www.webofscience.com/wos/woscc/full-record/WOS:000422703100013.
[40] Guo, Lin, Yang, Wu, Huang, Qiang, Qiang, Jiali, Hart, Jonathan Ross, Wang, Wenyuan, Hu, Junhao, Zhu, Jidong, Liu, Nan, Zhang, Yaoyang. Selenocysteine-Specific Mass Spectrometry Reveals Tissue-Distinct Selenoproteomes and Candidate Selenoproteins. CELL CHEMICAL BIOLOGY[J]. 2018, 第 10 作者  通讯作者  25(11): 1380-+, http://dx.doi.org/10.1016/j.chembiol.2018.08.006.
[41] Yang, Xiangyun, Wang, Zhiyuan, Guo, Lin, Zhu, Zhengjiang, Zhang, Yaoyang. Proteome-Wide Analysis of N-Glycosylation Stoichiometry Using SWATH Technology. JOURNAL OF PROTEOME RESEARCH[J]. 2017, 第 5 作者  通讯作者  16(10): 3830-3840, https://www.webofscience.com/wos/woscc/full-record/WOS:000412789400031.
[42] Mu, Ruiling, Tat, John, Zamudio, Robert, Zhang, Yaoyang, Yates, John R, III, Kumagai, Akiko, Dunphy, William G, Reed, Steven I. CKS Proteins Promote Checkpoint Recovery by Stimulating Phosphorylation of Treslin. MOLECULAR AND CELLULAR BIOLOGY[J]. 2017, 第 4 作者37(20): https://www.webofscience.com/wos/woscc/full-record/WOS:000411720800007.
[43] Jin, Hyun Yong, Oda, Hiroyo, Chen, Pengda, Yang, Chao, Zhou, Xiaojuan, Kang, Seung Goo, Valentine, Elizabeth, Kefauver, Jennifer M, Liao, Lujian, Zhang, Yaoyang, GonzalezMartin, Alicia, Shepherd, Jovan, Morgan, Gareth J, Mondala, Tony S, Head, Steven R, Kim, PyeungHyeun, Xiao, Nengming, Fu, Guo, Liu, WenHsien, Han, Jiahuai, Williamson, James R, Xiao, Changchun. Differential Sensitivity of Target Genes to Translational Repression by miR-17 similar to 92. PLOS GENETICS[J]. 2017, 第 10 作者13(2): https://www.webofscience.com/wos/woscc/full-record/WOS:000396403100015.
[44] Pedros, Christophe, Zhang, Yaoyang, Hu, Joyce K, Choi, Youn Soo, CanonigoBalancio, Ann J, Yates, John R, III, Altman, Amnon, Crotty, Shane, Kong, KokFai. A TRAF-like motif of the inducible costimulator ICOS controls development of germinal center T-FH cells via the kinase TBK1. NATURE IMMUNOLOGY[J]. 2016, 第 2 作者17(7): 825-+, 
[45] 张耀阳. TBK1 controls differentiation of germinal center T follicular helper cells via a novel TRAF-like motif of ICOS. Nature Immunology. 2016, 第 1 作者
[46] Wang, Hui, Ma, Zaijun, Niu, Kongyan, Xiao, Yi, Wu, Xiaofen, Pan, Chenyu, Zhao, Yun, Wang, Kai, Zhang, Yaoyang, Liu, Nan. Antagonistic roles of Nibbler and Hen1 in modulating piRNA 3 ' ends in Drosophila. DEVELOPMENT[J]. 2016, 第 9 作者  通讯作者  143(3): 530-539, https://www.webofscience.com/wos/woscc/full-record/WOS:000369501200016.
[47] Hart, Jonathan R, Zhang, Yaoyang, Liao, Lujian, Ueno, Lynn, Du, Lisa, Jonkers, Marloes, Yates, John R, III, Vogt, Peter K. The butterfly effect in cancer: A single base mutation can remodel the cell. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2015, 第 2 作者112(4): 1131-1136, https://www.webofscience.com/wos/woscc/full-record/WOS:000348417000051.
[48] Huang, Qiang, Yang, Lu, Luo, Ji, Guo, Lin, Wang, Zhiyuan, Yang, Xiangyun, Jin, Wenhai, Fang, Yanshan, Ye, Juanying, Shan, Bing, Zhang, Yaoyang. SWATH enables precise label-free quantification on proteome scale. PROTEOMICS[J]. 2015, 第 11 作者  通讯作者  15(7): 1215-1223, https://www.webofscience.com/wos/woscc/full-record/WOS:000352512100005.
[49] Zhang, Yaoyang, Xu, Tao, Shan, Bing, Hart, Jonathan, Aslanian, Aaron, Han, Xuemei, Zong, Nobel, Li, Haomin, Choi, Howard, Wang, Dong, Acharya, Lipi, Du, Lisa, Vogt, Peter K, Ping, Peipei, Yates, John R, III. ProteinInferencer: Confident protein identification and multiple experiment comparison for large scale proteomics projects. JOURNAL OF PROTEOMICS[J]. 2015, 第 1 作者129: 25-32, http://dx.doi.org/10.1016/j.jprot.2015.07.006.
[50] Xia, Hongguang, Najafov, Ayaz, Geng, Jiefei, GalanAcosta, Lorena, Han, Xuemei, Guo, Yuan, Shan, Bing, Zhang, Yaoyang, Norberg, Erik, Zhang, Tao, Pan, Lifeng, Liu, Junli, Coloff, Jonathan L, Ofengeim, Dimitry, Zhu, Hong, Wu, Kejia, Cai, Yu, Yates, John R, Zhu, Zhengjiang, Yuan, Junying, VakifahmetogluNorberg, Helin. Degradation of HK2 by chaperone-mediated autophagy promotes metabolic catastrophe and cell death. JOURNAL OF CELL BIOLOGY[J]. 2015, 第 8 作者210(5): 705-716, http://dx.doi.org/10.1083/jcb.201503044.
[51] Ofengeim, Dimitry, Ito, Yasushi, Najafov, Ayaz, Zhang, Yaoyang, Shan, Bing, DeWitt, Judy Park, Ye, Juanying, Zhang, Xumin, Chang, Ansi, VakifahmetogluNorberg, Helin, Geng, Jiefei, Py, Benedicte, Zhou, Wen, Amin, Palak, Lima, Jonilson Berlink, Qi, Chunting, Yu, Qiang, Trapp, Bruce, Yuan, Junying. Activation of Necroptosis in Multiple Sclerosis. CELL REPORTS[J]. 2015, 第 4 作者10(11): 1836-1849, http://dx.doi.org/10.1016/j.celrep.2015.02.051.
[52] Tang, Bin, Wang, Tingting, Wan, Huida, Han, Li, Qin, Xiaoyan, Zhang, Yaoyang, Wang, Jian, Yu, Chunlei, Berton, Fulvia, Francesconi, Walter, Yates, John R, III, Vanderklish, Peter W, Liao, Lujian. Fmr1 deficiency promotes age-dependent alterations in the cortical synaptic proteome. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2015, 第 6 作者112(34): E4697-E4706, http://www.corc.org.cn/handle/1471x/2268389.
[53] Shan, Bing, Xu, Chunping, Zhang, Yaoyang, Xu, Tao, Gottesfeld, Joel M, Yates, John R, III. Quantitative Proteomic Analysis Identifies Targets and Pathways of a 2-Aminobenzamide HDAC Inhibitor in Friedreich's Ataxia Patient iPSC-Derived Neural Stem Cells. JOURNAL OF PROTEOME RESEARCH[J]. 2014, 第 3 作者13(11): 4558-4566, https://www.webofscience.com/wos/woscc/full-record/WOS:000344636500008.
[54] Zhang, Yaoyang, Shan, Bing, Boyle, Monica, Liu, Jacqueline, Liao, Lujian, Xu, Tao, Yates, John R, III. Brain Proteome Changes Induced by Olfactory Learning in Drosophila. JOURNAL OF PROTEOME RESEARCH[J]. 2014, 第 1 作者13(8): 3763-3770, http://dx.doi.org/10.1021/pr500325q.
[55] Zhang, Yaoyang, Fonslow, Bryan R, Shan, Bing, Baek, MoonChang, Yates, John R, III. Protein Analysis by Shotgun/Bottom-up Proteomics. CHEMICAL REVIEWS. 2013, 第 1 作者113(4): 2343-2394, http://dx.doi.org/10.1021/cr3003533.
[56] Dan Li, Jinxia Lu, Yi Zhu, Chong Li, Rong Grace Zhai, Lin Jiang, Woo Shik Shin, Yanshan Fang, Yaoyang Zhang, Shengnan Zhang, Yi Xiao, Shuai Dou, Cong Liu, Chunyu Jia, Xiaojuan Ma, Chuchu Wang, Jingfei Xie, Jiali Qiang, Houfang Long, Jiaqi Liu, Juntao Yang. Nicotinamide mononucleotide adenylyltransferase uses its NAD+ substrate-binding site to chaperone phosphorylated Tau. PUBLISHER. 第 9 作者http://oa.las.ac.cn/oainone/service/browseall/read1?ptype=JA&workid=JA202004218662564ZK.
[57] Jingshu Li, Ye Cao, Kongyan Niu, Jiaqian Qiu, Han Wang, Yingnan You, Dean Li, Yu Luo, Zhengjiang Zhu, Yaoyang Zhang, Nan Liu. Quantitative acetylomics reveals dynamics of protein lysine acetylation in mouse livers during aging and upon the treatment of nicotinamide mononucleotide. MOLECULAR & CELLULAR PROTEOMICS. 第 10 作者http://dx.doi.org/10.1016/j.mcpro.2022.100276.