基本信息
杨莹  女  博导  中国科学院北京基因组研究所(国家生物信息中心)
电子邮件: yingyang@big.ac.cn
通信地址: 北京市朝阳区北辰西路一号院104号楼
邮政编码: 100101

研究领域

RNA生物学技术研发及调控机制和功能解析

招生信息

   
招生专业
071010-生物化学与分子生物学
0710J3-生物信息学
招生方向
RNA表观转录组学

教育背景

2009-09--2014-07   中国科学院北京基因组研究所(国家生物信息中心)   理学博士
2005-09--2009-07   山东大学   理学学士
学历
研究生

学位
博士

工作经历


工作简历
2023-03~现在, 中国科学院北京基因组研究所(国家生物信息中心), 卓越青年研究员
2018-05~现在, 中国科学院北京基因组研究所(国家生物信息中心), 副研究员
2014-07~2018-05,中国科学院北京基因组研究所(国家生物信息中心), 助理研究员
社会兼职
2023-05-01-今,Genomics, Proteomics & Bioinformatics期刊, 青年编委
2022-11-30-今,The Innovation期刊, 青年编委
2018-05-01-今,中国生物化学与分子生物学会核糖核酸协会, 青年工作委员会委员

教授课程

分子遗传学和表观遗传学
基因组学概述
生物化学与分子生物学实验

专利与奖励

   
奖励
(1) 2023年度科睿唯安“全球高被引科学家“, 其他, 2023
(2) 2022年度科睿唯安“全球高被引科学家”, , 其他, 2022
(3) 中国科学院大学2020年校级研究生优秀课程, 部委级, 2020
(4) 中国科学院大学2019年学院级研究生优秀课程, , 部委级, 2019
(5) 第三届中国科协优秀科技论文, 国家级, 2018
(6) 2017年中国生命科学研究领域十大进展, , 国家级, 2017
(7) 2017年Sanofi-Cell Research杰出研究文章奖, 其他, 2017
专利
( 1 ) 链置换引物和细胞转录组文库构建方法, 发明专利, 2021, 第 7 作者, 专利号: CN111549025B

( 2 ) RNA 5mC重亚硫酸盐测序的文库构建方法及其应用, 2018, 第 2 作者, 专利号: CN105132409B

出版信息

   
发表论文
[1] Cell Proliferation. 2023,   通讯作者  
[2] Genomics, Proteomics & Bioinformatics. 2023,   通讯作者  
[3] Wen-Lan Yang, Weinan Qiu, Ting Zhang, Kai Xu, Zi-Juan Gu, Yu Zhou, Heng-Ji Xu, Zhong-Zhou Yang, Bin Shen, Yong-Liang Zhao, Qi Zhou, Ying Yang, Wei Li, Peng-Yuan Yang, Yun-Gui Yang. Nsun2 coupling with RoRγt shapes the fate of Th17 cells and promotes colitis. Nature Communications[J]. 2023, 第 12 作者  通讯作者  14(1): 1-16, http://dx.doi.org/10.1038/s41467-023-36595-w.
[4] Huan Yao, Chun-Chun Gao, Danru Zhang, Jiawei Xu, Gege Song, Xiu Fan, Dao-Bo Liang, Yu-Sheng Chen, Qian Li, Yanjie Guo, Yu-Ting Cai, Lulu Hu, Yong-Liang Zhao, Ying-Pu Sun, Ying Yang, Jianyong Han, Yun-Gui Yang. scm 6 A-seq reveals single-cell landscapes of the dynamic m 6 A during oocyte maturation and early embryonic development. Nature Communications[J]. 2023, 第 15 作者  通讯作者  14(1): 1-16, http://dx.doi.org/10.1038/s41467-023-35958-7.
[5] Wang Xiuzhi, Wang Mengke, Dai Xinyuan, Han Xiao, Zhou Yu, Lai Weiyi, Zhang Liyuan, Yang Ying, Chen Yusheng, Wang Hailin, Zhao Yong-Liang, Shen Bin, Zhang Yuhan, Huang Ying, Yang Yun-Gui. RNA 5-methylcytosine regulates YBX2-dependent liquid-liquid phase separation. Fundamental Research[J]. 2022, 2: 48-55, 
[6] Yao Huan, Yang Ying, Yang Yun-Gui. scDART-Seq: Mapping m6A at single cell level. Molecular Cell[J]. 2022, 第 2 作者  通讯作者  82(4): 713-715, 
[7] Shi, Boyang, Heng, Jian, Zhou, JiaYi, Yang, Ying, Zhang, WanYing, Koziol, Magdalena J, Zhao, YongLiang, Li, Pilong, Liu, Feng, Yang, YunGui. Phase separation of Ddx3xb helicase regulates maternal-to-zygotic transition in zebrafish. Cell Research[J]. 2022, 第 4 作者32(8): 715-728, http://dx.doi.org/10.1038/s41422-022-00655-5.
[8] Gao, ChunChun, Li, Man, Deng, Wei, Ma, ChunHui, Chen, YuSheng, Sun, YongQiao, Du, Tingfu, Liu, QianLan, Li, WenJie, Zhang, Bing, Sun, Lihong, Liu, SiMeng, Li, Fengli, Qi, Feifei, Qu, Yajin, Ge, Xinyang, Liu, Jiangning, Wang, Peng, Niu, Yamei, Liang, Zhiyong, Zhao, YongLiang, Huang, Bo, Peng, XiaoZhong, Yang, Ying, Qin, Chuan, Tong, WeiMin, Yang, YunGui. Differential transcriptomic landscapes of multiple organs from SARS-CoV-2 early infected rhesus macaques. Protein & Cell[J]. 2022, 第 24 作者  通讯作者  13(12): 920-939, http://lib.cqvip.com/Qikan/Article/Detail?id=7108920222.
[9] Xu, Yangfan, He, Xiaoyu, Wang, Shanzheng, Sun, Baofa, Jia, Ruobing, Chai, Peiwei, Li, Fang, Yang, Ying, Ge, Shengfang, Jia, Renbing, Yang, YunGui, Fan, Xianqun. The m(6)A reading protein YTHDF3 potentiates tumorigenicity of cancer stem-like cells in ocular melanoma through facilitating CTNNB1 translation. Oncogene[J]. 2022, 第 8 作者41(9): 1281-1297, http://dx.doi.org/10.1038/s41388-021-02146-0.
[10] Li, Bochuan, Zhang, Ting, Liu, Mengxia, Cui, Zhen, Zhang, Yanhong, Liu, Mingming, Liu, Yanan, Sun, Yongqiao, Li, Mengqi, Tian, Yikui, Yang, Ying, Jiang, Hongfeng, Liang, Degang. RNA N-6-methyladenosine modulates endothelial atherogenic responses to disturbed flow in mice. ELIFE[J]. 2022, 第 11 作者  通讯作者  11: http://dx.doi.org/10.7554/eLife.69906.
[11] Xiao Han, Jia Guo, Mengke Wang, Nan Zhang, Jie Ren, Ying Yang, Xu Chi, Yusheng Chen, Huan Yao, YongLiang Zhao, YunGui Yang, Yingpu Sun, Jiawei Xu. Dynamic DNA 5-hydroxylmethylcytosine and RNA 5-methycytosine Reprogramming During Early Human Development. Genomics, Proteomics & Bioinformatics[J]. 2022, 第 6 作者http://dx.doi.org/10.1016/j.gpb.2022.05.005.
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[13] Yingpeng Yao, Ying Yang, Wenhui Guo, Lifan Xu, Menghao You, YiChang Zhang, Zhen Sun, Xiao Cui, Guotao Yu, Zhihong Qi, Jingjing Liu, Fang Wang, Juanjuan Liu, Tianyan Zhao, Lilin Ye, YunGui Yang, Shuyang Yu. METTL3-dependent m(6)A modification programs T follicular helper cell differentiation. NATURE COMMUNICATIONS[J]. 2021, 第 2 作者12(1): https://www.webofscience.com/wos/woscc/full-record/WOS:000624979400009.
[14] Wu, Gongwei, Suo, Caixia, Yang, Ying, Shen, Shengqi, Sun, Linchong, Li, ShiTing, Zhou, Yingli, Yang, Dongdong, Wang, Yan, Cai, Yongping, Wang, Nana, Zhang, Huafeng, Yang, YunGui, Cao, Jie, Gao, Ping. MYC promotes cancer progression by modulating m(6)A modifications to suppress target gene translation. EMBO reports[J]. 2021, 第 3 作者22(3): https://www.webofscience.com/wos/woscc/full-record/WOS:000606482600001.
[15] Han, Xiao, Wang, Mengke, Zhao, YongLiang, Yang, Ying, Yang, YunGui. RNA methylations in human cancers. SEMINARS IN CANCER BIOLOGY[J]. 2021, 第 4 作者  通讯作者  75: 97-115, http://dx.doi.org/10.1016/j.semcancer.2020.11.007.
[16] Weinan Qiu, Qingyang Zhang, Rui Zhang, Yangxu Lu, Xin Wang, Huabin Tian, Ying Yang, Zijuan Gu, Yanan Gao, Xin Yang, Guanshen Cui, Baofa Sun, Yanan Peng, Hongyu Deng, Hua Peng, Angang Yang, YunGui Yang, Pengyuan Yang. N-6-methyladenosine RNA modification suppresses antiviral innate sensing pathways via reshaping double-stranded RNA. NATURECOMMUNICATIONS[J]. 2021, 第 7 作者12(1): https://doaj.org/article/e3ca47ef6654412d86d5ab34d1d96bcf.
[17] Zhang, Ting, Yang, Ying, Xiang, Zichun, Gao, ChunChun, Wang, Wenjing, Wang, Conghui, Xiao, Xia, Wang, Xing, Qiu, WeiNan, Li, WenJie, Ren, Lili, Li, Mingkun, Zhao, YongLiang, Chen, YuSheng, Wang, Jianwei, Yang, YunGui. N-6-methyladenosine regulates RNA abundance of SARS-CoV-2. Cell Discovery[J]. 2021, 第 2 作者7(1): https://doaj.org/article/ff9505871ecf4f7284bcec184d22b832.
[18] Haiyuan Mu, Ting Zhang, Ying Yang, Danru Zhang, Jie Gao, Junhong Li, Liang Yue, Dengfeng Gao, Bingbo Shi, Yue Han, Liang Zhong, Xinze Chen, ZhenBo Wang, Zhen Lin, MingHan Tong, QingYuan Sun, YunGui Yang, Jianyong Han. METTL3-mediated mRNA N 6-methyladenosine is required for oocyte and follicle development in mice. CELL DEATH AND DISEASE[J]. 2021, 第 3 作者12(11): 1-13, https://doaj.org/article/2535e8444c6345388c146a0e242a53bf.
[19] Zhong Kang. OsNSUN2-mediated 5-methylcytidine mRNA modification enhances rice adaptation to high-temperature.. Developmental Cell. 2020, 
[20] Li, Yuhuan, Zhang, Qingyang, Cui, Guanshen, Zhao, Fang, Tian, Xin, Sun, BaoFa, Yang, Ying, Li, Wei. m(6)A Regulates Liver Metabolic Disorders and Hepatogenous Diabetes. GENOMICS PROTEOMICS & BIOINFORMATICS[J]. 2020, 第 7 作者  通讯作者  18(4): 371-383, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=6985669&detailType=1.
[21] Yang Ying. RNA structural dynamics regulates early embryogenesis through controlling transcriptome fate and function. Genome Biology. 2020, 第 1 作者
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[23] Yang Ying. 5-methylcytosine analysis by RNA-BisSeq. Methods in Molecular Biology (Clifton, N.J.). 2019, 第 1 作者
[24] Malbec, Lionel, Zhang, Ting, Chen, YuSheng, Zhang, Ying, Sun, BaoFa, Shi, BoYang, Zhao, YongLiang, Yang, Ying, Yang, YunGui. Dynamic methylome of internal mRNA N-7-methylguanosine and its regulatory role in translation. Cell Research[J]. 2019, 第 8 作者  通讯作者  29(11): 927-941, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6889513/.
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[26] Shi, Zhan, Zhang, Qingyang, Yan, Huige, Yang, Ying, Wang, Pingzhang, Zhang, Yixiao, Deng, Zhenling, Yu, Meng, Zhou, Wenjing, Wang, Qianqian, Yang, Xi, Mo, Xiaoning, Zhang, Chi, Huang, Jing, Dai, Hui, Sun, Baofa, Zhao, Yongliang, Zhang, Liang, Yang, YunGui, Qiu, Xiaoyan. More than one antibody of individual B cells revealed by single-cell immune profiling. CELL DISCOVERY[J]. 2019, 第 4 作者5(1): https://doaj.org/article/9e0c212bd51c47128bde3c3c917dc7eb.
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[32] Yang, Ying, Wang, Lu, Han, Xiao, Yang, WenLan, Zhang, Mengmeng, Ma, HaiLi, Sun, BaoFa, Li, Ang, Xia, Jun, Chen, Jing, Heng, Jian, Wu, Baixing, Chen, YuSheng, Xu, JiaWei, Yang, Xin, Yao, Huan, Sun, Jiawei, Lyu, Cong, Wang, HaiLin, Huang, Ying, Sun, YingPu, Zhao, YongLiang, Meng, Anming, Ma, Jinbiao, Liu, Feng, Yang, YunGui. RNA 5-Methylcytosine Facilitates the Maternal-to-Zygotic Transition by Preventing Maternal mRNA Decay. MOLECULAR CELL[J]. 2019, 第 1 作者75(6): 1188-+, http://dx.doi.org/10.1016/j.molcel.2019.06.033.
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[50] Yang Ying. Methylated nuclear RNA is the main substrate of the obesity-associated FTO protein. Nature Chemical Biology. 2011, 第 1 作者
[51] Qingyang Zhang, Ying Yang, Guanshen Cui, Xin Yang, Baofa Sun, YunGui Yang, Zijuan Gu, Yangxu Lu, Yanan Peng, Xin Wang, Hua Peng, Hongyu Deng, Huabin Tian, Weinan Qiu, Yanan Gao, Pengyuan Yang, Rui Zhang, Angang Yang. N6-methyladenosine RNA modification suppresses antiviral innate sensing pathways via reshaping double-stranded RNA. SPRINGER. 第 2 作者http://oa.las.ac.cn/oainone/service/browseall/read1?ptype=JA&workid=JA202107029255192ZK.
[52] Ying Lv, Fei Han, Mengxia Liu, Ting Zhang, Guanshen Cui, Jiaojiao Wang, Ying Yang, YunGui Yang, Wenqiang Yang. Characteristics of N6-methyladenosine Modification During Sexual Reproduction of Chlamydomonas reinhardtii. GENOMICS, PROTEOMICS & BIOINFORMATICS. 第 7 作者
[53] Ying Yang, YiChang Zhang, YunGui Yang, Lifan Xu, Lilin Ye, Wenhui Guo, Jingjing Liu, Zhen Sun, Tianyan Zhao, Guotao Yu, Juanjuan Liu, Xiao Cui, Zhihong Qi, Fang Wang, Menghao You, Yingpeng Yao, Shuyang Yu. METTL3-dependent m6A modification programs T follicular helper cell differentiation. SPRINGER. 第 1 作者http://oa.las.ac.cn/oainone/service/browseall/read1?ptype=JA&workid=JA202106293328549ZK.
参编著作
(1) 《精准医学基础系列》(第11章. RNA修饰与疾病的精准医疗), 上海交通大学出版社有限公司, 2018-03, 第 其他 作者
(2) RNA甲基化表观转录组学, 浙江大学出版社, 2021-02, 第 其他 作者
(3) 表观遗传学, 科学出版社, 2022-11, 第 其他 作者

科研活动

   
科研项目
( 1 ) RNA甲基化修饰调控血液血管发育机制研究, 参与, 国家任务, 2019-09--2024-08
( 2 ) 中国科学院青年创新促进会优秀会员, 负责人, 中国科学院计划, 2023-01--2025-12
( 3 ) 基因组修饰多维组学分析技术与标准化研究, 参与, 中国科学院计划, 2020-01--2024-12
( 4 ) 单细胞RNA甲基化测序技术开发与应用, 负责人, 地方任务, 2020-09--2023-08
( 5 ) 单细胞RNA m5C测序技术研发, 负责人, 国家任务, 2021-01--2023-12
( 6 ) 新型核酸修饰的检测鉴定、功能调控与化学干预, 参与, 国家任务, 2022-01--2024-12
( 7 ) 日本三角涡虫再生RNA表观遗传学研究, 负责人, 国家任务, 2018-01--2021-12
( 8 ) RNA新型修饰调控多能性干细胞初始态和始发态转变机制研究, 参与, 国家任务, 2018-07--2022-12
学术会议
(1)scm6A-seq reveals single-cell landscape of the dynamic m6A during oocyte maturation and early embryonic development   第四届全国核糖核酸(RNA)青年学术会议   2023-04-20
(2)RNA甲基化修饰调控发育和疾病机制   万方医学助力颠覆性前沿技术应用发展系列论坛   2023-03-07
(3)RNA甲基化修饰调控再生和T细胞免疫   中国抗癌协会肿瘤病理专业委员会肿瘤分子病理协作组第四届年会   2022-09-18
(4)WTAP-mediated cell-cell communication controls planarian regeneration   中国生物化学与分子生物学会2021年全国学术大会   2021-11-24
(5)m6A-mediated cell-cell communication controls planarian regeneration   第十一届全国核糖核酸(RNA)会议   2021-07-04
(6)RNA methylation regulates regeneration of the planarian Schmidtea mediterranea   中科院青促会第三届青年生命科学论坛   2021-06-06
(7)Mettl3-mediated N6-methylcytosine regulates RNA abundance of SARS-CoV-2   2020-12-19
(8)RNA 5-methylcytosine facilitates maternal-to-zygotic transition through preventing maternal RNA decay   第一届全国核糖核酸(RNA)青年学术会议   2019-05-11
(9)RNA m5C修饰影响斑马鱼胚胎发育的分子机制   首届群英汇智青年学者论坛   2019-05-10
(10)RNA m5C修饰的分布及功能研究   中国细胞生物学学会2018年全国学术大会   2018-04-10

学生培养

已指导学生

郭静云  硕士研究生  085238-生物工程  

梁承志  硕士研究生  071010-生物化学与分子生物学  

陈静  硕士研究生  085238-生物工程  

普俊铭  硕士研究生  071007-遗传学  

现指导学生

夏双燕  硕士研究生  0710J3-生物信息学  

古烨  硕士研究生  071010-生物化学与分子生物学  

钟帅  硕士研究生  0710Z1-基因组学