基本信息
胡松年  男  博导  中国科学院微生物研究所
电子邮件: husn@im.ac.cn
通信地址: 北京市朝阳区北辰西路1号院3号
邮政编码: 100101

招生信息

   
招生专业
0710J3-生物信息学
071007-遗传学
招生方向
微生物资源生物信息挖掘与利用

教育背景

1991-09--1996-07   中国农业大学   生物化学专业 获理学博士学位
1987-09--1991-07   天津商学院   食品工程专业 获理学学士学位

工作经历

   
工作简历
2019-08~现在, 中国科学院微生物研究所, 研究员 博士生导师
2014-07~2019-07,中国科学院基因组信息与科学重点实验室, 主任
2013-07~2014-07,中国科学院基因组信息与科学重点实验室, 副主任
2003-11~2019-07,中国科学院北京基因组研究所, 研究员 博士生导师
2002-02~2008-09,浙江大学沃森基因组科学研究院, 教授 硕士生导师
1999-08~2003-11,中国科学院遗传与发育研究所人类基因组中心, 总工程师
1998-08~1999-07,美国西雅图华盛顿大学基因组中心, 访问学者
1996-09~1998-07,中国医学科学院基础医学研究所, 助理研究员
1991-09~1996-07,中国农业大学, 生物化学专业 获理学博士学位
1987-09~1991-07,天津商学院, 食品工程专业 获理学学士学位
社会兼职
2022-05-01-今,生物计量专业委员会, 委员
2016-01-01-今,中国康复技术转化及发展促进会高血压精准防治十万人队列计划, 首席基因组学 专家
2015-01-01-今,北京乳腺病防治学会转化医学专业委员会, 委员
2015-01-01-今,中国康复技术转化及发展促进会 精准医学与肿瘤康复专业委员会, 副主任委员
2014-12-31-今,中国科学院大学生命科学学院 教学督导委员会, 委员
2012-12-31-2024-12-31,中国遗传学会 基因组学专业委员会, 副主任委员
2011-02-01-今,Genomics, Proteomics & Bioinformatics 执行副主编,
2011-02-01-今,Nature Reviews Genetics (Chinese Edition) 编委,

教授课程

基因组信息系统与实践
基因组学分析技术与原理
文献阅读
文献阅读-2
文献阅读-4
文献阅读-6
文献阅读-8
文献阅读-10
文献阅读-12
文献阅读-14
文献阅读-1
文献阅读-3
文献阅读-5
文献阅读-7
文献阅读-9
文献阅读-11
文献阅读-13
基因组学技术与原理
基因组学
基因组学前沿
基因组学实用技术讲座

专利与奖励

   
奖励信息
(1) 河北省科学技术进步三等奖, 三等奖, 省级, 2015
(2) 唐山市科技进步二等奖, 二等奖, 市地级, 2015
(3) 国务院特殊津贴_, 国家级, 2014
(4) 中国科学院朱李月华优秀教师奖, , 院级, 2008
(5) 利用EST信息资源大规模克隆家蚕功能基因 浙江省科学技术一等奖, 一等奖, 省级, 2007
(6) 中国科学院优秀教师奖, , 院级, 2006
(7) 中国杂交水稻基因组计划 中国科学院杰出科技成就集体奖, , 院级, 2003
(8) 中国杂交水稻基因组计划 香港求是科技基金求是杰出科技成就集体奖, , 其他, 2002

出版信息

   
发表论文
(1) 3号染色体短臂末端两个大片段基因组区域的基因分布与GC含量分析, Comparing Gene Density and GC Content Between Two Large Genomic Blocks at Short Arm of Chromosome 3, 遗传学报, [[[2004]]], 
(2) 3号染色体短臂末端两个大片段基因组区域的基因分布与GC含量分析, Comparing Gene Density and GC Content Between Two Large Genomic Blocks at Short Arm of Chromosome 3, 遗传学报, [[[2004]]], 
(3) 丝瓜的三聚体G蛋白的初步研究, 中国生物化学与分子生物学报, [[[1999]]], 
(4) 肌动蛋白与真核生物的进化, 动物学报, [[[1999]]], 
(5) 丝瓜的三聚体G蛋白的初步研究, 中国生物化学与分子生物学报, [[[1999]]], 
(6) 肌动蛋白与真核生物的进化, 动物学报, [[[1999]]], 
(7) VarEPS: an evaluation and prewarning system of known and virtual variations of SARS-CoV-2 genomes, Nucleic Acids Research, 2021, 
(8) Genome of the Giant Panda Roundworm Illuminates Its Host Shift and Parasitic Adaptation, Genomics Proteomics Bioinformatics, 2021, 通讯作者
(9) Association of CYP3A5 Gene Polymorphisms and Amlodipine-Induced Peripheral Edema in Chinese Han Patients with Essential Hypertension, Pharmacogenomics and Personalized Medicine, 2021, 
(10) Association of CYP3A5 Gene Polymorphisms and Amlodipine-Induced Peripheral Edema in Chinese Han Patients with Essential Hypertension, PHARMACOGENOMICS & PERSONALIZED MEDICINE, 2021, 通讯作者
(11) Complete sequences of two new KPC-harbouring plasmids in Klebsiella pneumoniae ST11 strains in China, JOURNAL OF GLOBAL ANTIMICROBIAL RESISTANCE, 2021, 通讯作者
(12) 5-Hydroxymethylcytosine signatures in circulating cell-free DNA as diagnostic and predictive biomarkers for coronary artery disease, CLINICAL EPIGENETICS, 2020, 其他(合作组作者)
(13) 微生物组测序与分析专家共识, Expert consensus on microbiome sequencing and analysis, 生物工程学报, 2020, 第 10 作者
(14) Gene family expansion of pinewood nematode to detoxify its host defence chemicals, MOLECULAR ECOLOGY, 2020, 通讯作者
(15) The genome evolution and domestication of tropical fruit mango, GENOME BIOLOGY, 2020, 通讯作者
(16) IC4R-2.0:Rice Genome Reannotation Using Massive RNA-seq Data, IC4R-2.0: Rice Genome Reannotation Using Massive RNA-seq Data, GENOMICS PROTEOMICS & BIOINFORMATICS, 2020, 通讯作者
(17) Identification of a SCN4A mutation in a large Chinese family with atypical normokalemic periodic paralysis using whole-exome sequencing, JOURNAL OF INTERNATIONAL MEDICAL RESEARCH, 2020, 第 2 作者
(18) A Method for Estimating 24-Hour Urinary Sodium Excretion by Casual Urine Specimen in Chinese Hypertensive Patients, AMERICAN JOURNAL OF HYPERTENSION, 2020, 第 9 作者
(19) Structural and Functional Annotation of Transposable Elements Revealed a Potential Regulation of Genes Involved in Rubber Biosynthesis by TE-Derived siRNA Interference in Hevea brasiliensis, INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2020, 第 6 作者
(20) Post-transcriptional regulation of several biological processes involved in latex production in Hevea brasiliensis, PEERJ, 2020, 其他(合作组作者)
(21) A Reference Genome of Bursaphelenchus mucronatus Provides New Resources for Revealing Its Displacement by Pinewood Nematode, GENES, 2020, 第 10 作者
(22) Genome Assembly and Pathway Analysis of Edible Mushroom Agrocybe cylindracea, Genome Assembly and Pathway Analysis of Edible Mushroom Agrocybe cylindracea, GENOMICS PROTEOMICS & BIOINFORMATICS, 2020, 通讯作者
(23) Abundant Taxa and Favorable Pathways in the Microbiome of Soda-Saline Lakes in Inner Mongolia, FRONTIERS IN MICROBIOLOGY, 2020, 第 10 作者
(24) Semi-rational mutagenesis of an industrial Streptomyces fungicidicus strain for improved enduracidin productivity, APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2020, 其他(合作组作者)
(25) Editome Disease Knowledgebase (EDK): a curated knowledgebase of editome-disease associations in human, NUCLEIC ACIDS RESEARCH, 2019, 其他(合作组作者)
(26) Genome structure and evolution of Antirrhinum majus L, NATURE PLANTS, 2019, 第 31 作者
(27) The HuangZaoSi Maize Genome Provides Insights into Genomic Variation and Improvement History of Maize, The HuangZaoSi Maize Genome Provides Insights into Genomic Variation and Improvement History of Maize, 分子植物:英文版, 2019, 通讯作者
(28) The HuangZaoSi Maize Genome Provides Insights into Genomic Variation and Improvement History of Maize, MOLECULAR PLANT, 2019, 通讯作者
(29) Evolview v3: a webserver for visualization, annotation, and management of phylogenetic trees, NUCLEIC ACIDS RESEARCH, 2019, 通讯作者
(30) Transcriptomic profiling reveals MEP pathway contributing to ginsenoside biosynthesis in Panax ginseng, BMC GENOMICS, 2019, 通讯作者
(31) Plant editosome database: a curated database of RNA editosome in plants, NUCLEIC ACIDS RESEARCH, 2019, 第 10 作者
(32) REDO: RNA Editing Detection in Plant Organelles Based on Variant Calling Results, JOURNAL OF COMPUTATIONAL BIOLOGY, 2018, 通讯作者
(33) ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization, NUCLEIC ACIDS RESEARCH, 2018, 第 18 作者
(34) Analysis of gut microbiota diversity and auxiliary diagnosis as a biomarker in patients with schizophrenia: A cross-sectional study, SCHIZOPHRENIA RESEARCH, 2018, 通讯作者
(35) Tung Tree (Vernicia fordii, Hemsl.) Genome and Transcriptome Sequencing Reveals Co-Ordinate Up-Regulation of Fatty Acid β-Oxidation and Triacylglycerol Biosynthesis Pathways During Eleostearic Acid Accumulation in Seeds., Plant Cell Physiol., 2018, 通讯作者
(36) Tung Tree (Vernicia fordii, Hemsl.) Genome and Transcriptome Sequencing Reveals Co-Ordinate Up-Regulation of Fatty Acid beta-Oxidation and Triacylglycerol Biosynthesis Pathways During Eleostearic Acid Accumulation in Seeds, PLANT AND CELL PHYSIOLOGY, 2018, 通讯作者
(37) 复杂基因组测序技术研究进展, Advances of sequencing and assembling technologies for complex genomes, 遗传, 2018, 第 7 作者
(38) Identification of a G2-like transcription factor, OsPHL3, functions as a negative regulator of flowering in rice by co-expression and reverse genetic analysis, BMC PLANT BIOLOGY, 2018, 通讯作者
(39) Rice Genomics: over the Past Two Decades and into the Future, GENOMICS PROTEOMICS & BIOINFORMATICS, 2018, 第 4 作者
(40) RGAAT: A Reference-based Genome Assembly and Annotation Tool for New Genomes and Upgrade of Known Genomes, GENOMICS PROTEOMICS & BIOINFORMATICS, 2018, 通讯作者
(41) MVP: a microbe-phage interaction database, NUCLEIC ACIDS RESEARCH, 2018, 第 4 作者
(42) Rice Genomics: over the Past Two Decades and into the Future, Rice Genomics: over the Past Two Decades and into the Future, 基因组蛋白质组与生物信息学报:英文版, 2018, 第 4 作者
(43) A meta-analysis of the association of CKM gene rs8111989 polymorphism with sport performance, BIOLOGY OF SPORT, 2017, 通讯作者
(44) Genetic Alterations in Esophageal Tissues From Squamous Dysplasia to Carcinoma, GASTROENTEROLOGY, 2017, 第 29 作者
(45) CYP2A6 Polymorphisms Associate with Outcomes of S-1 Plus Oxaliplatin Chemotherapy in Chinese Gastric Cancer Patients, GENOMICS PROTEOMICS & BIOINFORMATICS, 2017, 通讯作者
(46) ISVASE: identification of sequence variant associated with splicing event using RNA-seq data, BMC BIOINFORMATICS, 2017, 通讯作者
(47) Rice Expression Database (RED): An integrated RNA-Seq-derived gene expression database for rice, JOURNAL OF GENETICS AND GENOMICS, 2017, 第 8 作者
(48) DRDB: An Online Date Palm Genomic Resource Database, FRONTIERS IN PLANT SCIENCE, 2017, 通讯作者
(49) Comparative genome analysis of programmed DNA elimination in nematodes, GENOME RESEARCH, 2017, 其他(合作组作者)
(50) Identification and analysis of mouse non-coding RNA using transcriptome data, SCIENCE CHINA-LIFE SCIENCES, 2016, 通讯作者
(51) 从精准医学看结直肠癌诊断与治疗的未来, Future diagnosis and treatment of colorectai cancer from the view of precision medicine, 中华胃肠外科杂志, 2016, 第 3 作者
(52) The rubber tree genome reveals new insights into rubber production and species adaptation, NATURE PLANTS, 2016, 
(53) Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees, NUCLEIC ACIDS RESEARCH, 2016, 通讯作者
(54) Information Commons for Rice (IC4R), NUCLEIC ACIDS RESEARCH, 2016, 
(55) Identification and analysis of house-keeping and tissue-specific genes based on RNA-seq data sets across 15 mouse tissues, GENE, 2016, 通讯作者
(56) Conserved Intramolecular Interactions Maintain Myosin Interacting-Heads Motifs Explaining Tarantula Muscle Super-Relaxed State Structural Basis, JOURNAL OF MOLECULAR BIOLOGY, 2016, 第 8 作者
(57) De novo Transcriptome Analysis Reveals Distinct Defense Mechanisms by Young and Mature Leaves of Hevea brasiliensis (Para Rubber Tree), SCIENTIFIC REPORTS, 2016, 通讯作者
(58) De Novo Sequencing and Transcriptome Analysis of Pleurotus eryngii subsp. tuoliensis (Bailinggu) Mycelia in Response to Cold Stimulation, MOLECULES, 2016, 通讯作者
(59) Comparative genomics reveals adaptive evolution of Asian tapeworm in switching to a new intermediate host (vol 7, 12485, 2016), NATURE COMMUNICATIONS, 2016, 
(60) De novo transcriptome analysis of Medicago falcata reveals novel insights about the mechanisms underlying abiotic stress-responsive pathway, BMC GENOMICS, 2015, 通讯作者
(61) Transcriptomic study of the red palm weevil Rhynchophorus ferrugineus embryogenesis, INSECT SCIENCE, 2015, 通讯作者
(62) Genome-wide mapping of 5-hydroxymethylcytosine in three rice cultivars reveals its preferential localization in transcriptionally silent transposable element genes, JOURNAL OF EXPERIMENTAL BOTANY, 2015, 第 14 作者
(63) Evaluation of the optimal dosage of S-1 in adjuvant SOX chemotherapy for gastric cancer, ONCOLOGY LETTERS, 2015, 第 9 作者
(64) Profiling microRNA expression during multi-staged date palm (Phoenix dactylifera L.) fruit development, GENOMICS, 2015, 其他(合作组作者)
(65) Integrated analysis of gene expression and microRNA regulation in three leukemia-related lymphoblastic cell lines, GENE, 2015, 第 8 作者
(66) An integrated RNA-Seq and network study reveals a complex regulation process of rice embryo during seed germination, BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2015, 第 7 作者
(67) 利用转录组数据鉴定和分析小鼠非编码RNA, 中国科学. 生命科学, 2015, 第 7 作者
(68) Metatranscriptomic Analyses of Plant Cell Wall Polysaccharide Degradation by Microorganisms in the Cow Rumen, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2015, 通讯作者
(69) Transcriptional profiling of biomass degradation-related genes during Trichoderma reesei growth on different carbon sources, JOURNAL OF BIOTECHNOLOGY, 2014, 第 7 作者
(70) 瘤胃细菌GH48家族糖苷水解酶基因多样性, Gene diversity of the bacterial 48 family glycoside hydrolase(GH48) in rumen environment, 微生物学报, 2014, 第 5 作者
(71) XELIRI compared with FOLFIRI as a second-line treatment in patients with metastatic colorectal cancer, ONCOLOGY LETTERS, 2014, 第 9 作者
(72) Whole transcriptome RNA-seq analysis: tumorigenesis and metastasis of melanoma, GENE, 2014, 通讯作者
(73) Transcriptomic analysis reveals key regulators of mammogenesis and the pregnancy-lactation cycle, SCIENCE CHINA-LIFE SCIENCES, 2014, 第 9 作者
(74) 小鼠精子发生早期microRNA的表达谱和调控模式——miRNA在小鼠精子发生中的作用, 中国科学. 生命科学, 2014, 第 10 作者
(75) Correction: De Novo Characterization of the Spleen Transcriptome of the Large Yellow Croaker ( Pseudosciaena crocea ) and Analysis of the Immune Relevant Genes and Pathways Involved in the Antiviral Response, PLoS ONE, 2014, 
(76) 小鼠精子发生早期microRNA的表达谱和调控模式——miRNA在小鼠精子发生中的作用, 中国科学. 生命科学, 2014, 第 10 作者
(77) Correction: De Novo Characterization of the Spleen Transcriptome of the Large Yellow Croaker ( Pseudosciaena crocea ) and Analysis of the Immune Relevant Genes and Pathways Involved in the Antiviral Response, PLoS ONE, 2014, 
(78) 中国先天性副肌强直一家系致病基因初步研究, Preliminary study of causative gene for a Chinese family paramyotonia congenital, 中国实用医药, 2013, 第 7 作者
(79) Digital Gene Expression Tag Profiling Analysis of the Gene Expression Patterns Regulating the Early Stage of Mouse Spermatogenesis, PLOS ONE, 2013, 通讯作者
(80) The Complete Mitochondrial Genome of Gossypium hirsutum and Evolutionary Analysis of Higher Plant Mitochondrial Genomes, PLOS ONE, 2013, 通讯作者
(81) Insight into the specific virulence related genes and toxin-antitoxin virulent pathogenicity islands in swine streptococcosis pathogen Streptococcus equi ssp. zooepidemicus strain ATCC35246, BMC GENOMICS, 2013, 
(82) Dynamic transcriptomes of human myeloid leukemia cells, GENOMICS, 2013, 通讯作者
(83) A large-scale gene discovery for the red palm weevil Rhynchophorus ferrugineus (Coleoptera: Curculionidae), INSECT SCIENCE, 2013, 其他(合作组作者)
(84) Genome sequence of the date palm Phoenix dactylifera L, NATURE COMMUNICATIONS, 2013, 第 2 作者
(85) Transgenic rice plants overexpressing BBTI4 confer partial but broad-spectrum bacterial blight resistance, JOURNAL OF PLANT BIOLOGY, 2013, 第 13 作者
(86) 基于新一代测序方法的小鼠睾丸出生后发育的转录组研究, 中国科学. 生命科学, 2013, 第 8 作者
(87) 中国先天性副肌强直一家系致病基因初步研究, Preliminary study of causative gene for a Chinese family paramyotonia congenital, 中国实用医药, 2013, 第 7 作者
(88) Digital Gene Expression Tag Profiling Analysis of the Gene Expression Patterns Regulating the Early Stage of Mouse Spermatogenesis, PLOS ONE, 2013, 通讯作者
(89) The Complete Mitochondrial Genome of Gossypium hirsutum and Evolutionary Analysis of Higher Plant Mitochondrial Genomes, PLOS ONE, 2013, 通讯作者
(90) Insight into the specific virulence related genes and toxin-antitoxin virulent pathogenicity islands in swine streptococcosis pathogen Streptococcus equi ssp. zooepidemicus strain ATCC35246, BMC GENOMICS, 2013, 
(91) Dynamic transcriptomes of human myeloid leukemia cells, GENOMICS, 2013, 通讯作者
(92) A large-scale gene discovery for the red palm weevil Rhynchophorus ferrugineus (Coleoptera: Curculionidae), INSECT SCIENCE, 2013, 其他(合作组作者)
(93) Genome sequence of the date palm Phoenix dactylifera L, NATURE COMMUNICATIONS, 2013, 第 2 作者
(94) Transgenic rice plants overexpressing BBTI4 confer partial but broad-spectrum bacterial blight resistance, JOURNAL OF PLANT BIOLOGY, 2013, 第 13 作者
(95) 基于新一代测序方法的小鼠睾丸出生后发育的转录组研究, 中国科学. 生命科学, 2013, 第 8 作者
(96) Replication-Associated Mutational Pressure (RMP) Governs Strand-Biased Compositional Asymmetry (SCA) and Gene Organization in Animal Mitochondrial Genomes, CURRENT GENOMICS, 2012, 通讯作者
(97) EvolView, an online tool for visualizing, annotating and managing phylogenetic trees, NUCLEIC ACIDS RESEARCH, 2012, 通讯作者
(98) 中国地鼠线粒体基因组的序列分析与分子进化, Sequence analysis of the complete mitochondrial genome and molecular evolution of Cricetulus griseus, 中国实验动物学报, 2012, 第 5 作者
(99) EVOLUTIONAL AND FUNCTIONAL ANALYSIS OF A SERINE PROTEASE IN Spodoptera litura, ARCHIVES OF INSECT BIOCHEMISTRY AND PHYSIOLOGY, 2012, 第 5 作者
(100) Comparative Analysis of the Genomes of Two Field Isolates of the Rice Blast Fungus Magnaporthe oryzae, PLOS GENETICS, 2012, 第 4 作者
(101) Transcriptome comparison between honey bee queen- and worker-destined larvae, INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY, 2012, 第 8 作者
(102) A complete sequence and transcriptomic analysis of date palm (Phoenix dactylifera L.) mitochondrial genome, PLoS One, 2012, 通讯作者
(103) High-throughput sequencing-based gene profiling on multi-staged fruit development of date palm ( Phoenix dactylifera, L.), PLANT MOLECULAR BIOLOGY, 2012, 第 9 作者
(104) Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza sativa L.), 2012, 通讯作者
(105) Molecular identification of Diphyllobothrium latum and a brief review of diphyllobothriosis in China, ACTA PARASITOLOGICA, 2012, 第 7 作者
(106) Complete Genome Sequence of the Metabolically Versatile Halophilic Archaeon Haloferax mediterranei , a Poly(3-Hydroxybutyrate- co -3-Hydroxyvalerate) Producer, JOURNAL OF BACTERIOLOGY, 2012, 通讯作者
(107) 茶薪菇国内外研究进展及展望, Research Progresses and Prospect of Agrocybe aegerita, 中国食用菌, 2012, 第 6 作者
(108) Pyrosequencing the Bemisia tabaci Transcriptome Reveals a Highly Diverse Bacterial Community and a Robust System for Insecticide Resistance, PLOS ONE, 2012, 第 13 作者
(109) Large-scale collection and annotation of gene models for date palm ( Phoenix dactylifera , L.), PLANT MOLECULAR BIOLOGY, 2012, 第 13 作者
(110) Replication-Associated Mutational Pressure (RMP) Governs Strand-Biased Compositional Asymmetry (SCA) and Gene Organization in Animal Mitochondrial Genomes, CURRENT GENOMICS, 2012, 通讯作者
(111) EvolView, an online tool for visualizing, annotating and managing phylogenetic trees, NUCLEIC ACIDS RESEARCH, 2012, 通讯作者
(112) 中国地鼠线粒体基因组的序列分析与分子进化, Sequence analysis of the complete mitochondrial genome and molecular evolution of Cricetulus griseus, 中国实验动物学报, 2012, 第 5 作者
(113) EVOLUTIONAL AND FUNCTIONAL ANALYSIS OF A SERINE PROTEASE IN Spodoptera litura, ARCHIVES OF INSECT BIOCHEMISTRY AND PHYSIOLOGY, 2012, 第 5 作者
(114) Comparative Analysis of the Genomes of Two Field Isolates of the Rice Blast Fungus Magnaporthe oryzae, PLOS GENETICS, 2012, 第 4 作者
(115) Transcriptome comparison between honey bee queen- and worker-destined larvae, INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY, 2012, 第 8 作者
(116) A complete sequence and transcriptomic analysis of date palm (Phoenix dactylifera L.) mitochondrial genome, PLoS One, 2012, 通讯作者
(117) High-throughput sequencing-based gene profiling on multi-staged fruit development of date palm ( Phoenix dactylifera, L.), PLANT MOLECULAR BIOLOGY, 2012, 第 9 作者
(118) Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza sativa L.), 2012, 通讯作者
(119) Molecular identification of Diphyllobothrium latum and a brief review of diphyllobothriosis in China, ACTA PARASITOLOGICA, 2012, 第 7 作者
(120) Complete Genome Sequence of the Metabolically Versatile Halophilic Archaeon Haloferax mediterranei , a Poly(3-Hydroxybutyrate- co -3-Hydroxyvalerate) Producer, JOURNAL OF BACTERIOLOGY, 2012, 通讯作者
(121) 茶薪菇国内外研究进展及展望, Research Progresses and Prospect of Agrocybe aegerita, 中国食用菌, 2012, 第 6 作者
(122) Pyrosequencing the Bemisia tabaci Transcriptome Reveals a Highly Diverse Bacterial Community and a Robust System for Insecticide Resistance, PLOS ONE, 2012, 第 13 作者
(123) Large-scale collection and annotation of gene models for date palm ( Phoenix dactylifera , L.), PLANT MOLECULAR BIOLOGY, 2012, 第 13 作者
(124) 条斑紫菜低覆盖度基因组草图分析, The analysis of the low coverage Porphyra yezoensis draft gehome, 海洋科学, 2011, 第 6 作者
(125) 基于第二代测序技术的细菌基因组与转录组研究策略简介, The brief introduction of research strategies for bacterial genome and transcriptome based on the next-generation sequencing technologies, 微生物学通报, 2011, 第 6 作者
(126) wapRNA: a web-based application for the processing of RNA sequences, BIOINFORMATICS, 2011, 通讯作者
(127) The Bryopsis hypnoides Plastid Genome: Multimeric Forms and Complete Nucleotide Sequence, PLOS ONE, 2011, 第 7 作者
(128) Genomic Analysis of the Multidrug-Resistant Acinetobacter baumannii Strain MDR-ZJ06 Widely Spread in China ▿, ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2011, 第 7 作者
(129) Thousands of Novel Transcripts Identified in Mouse Cerebrum, Testis, and ES Cells Based on ribo-minus RNA Sequencing, Frontiers in Genetics, 2011, 
(130) 中国地鼠基因组微卫星富集文库的构建与分析, Construction and identification of DNA libraries enriched for microsatellite repeat sequences of Chinese hamster, 中国实验动物学报, 2011, 第 6 作者
(131) 条斑紫菜低覆盖度基因组草图分析, The analysis of the low coverage Porphyra yezoensis draft gehome, 海洋科学, 2011, 第 6 作者
(132) 基于第二代测序技术的细菌基因组与转录组研究策略简介, The brief introduction of research strategies for bacterial genome and transcriptome based on the next-generation sequencing technologies, 微生物学通报, 2011, 第 6 作者
(133) wapRNA: a web-based application for the processing of RNA sequences, BIOINFORMATICS, 2011, 通讯作者
(134) The Bryopsis hypnoides Plastid Genome: Multimeric Forms and Complete Nucleotide Sequence, PLOS ONE, 2011, 第 7 作者
(135) Genomic Analysis of the Multidrug-Resistant Acinetobacter baumannii Strain MDR-ZJ06 Widely Spread in China ▿, ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2011, 第 7 作者
(136) Thousands of Novel Transcripts Identified in Mouse Cerebrum, Testis, and ES Cells Based on ribo-minus RNA Sequencing, Frontiers in Genetics, 2011, 
(137) 中国地鼠基因组微卫星富集文库的构建与分析, Construction and identification of DNA libraries enriched for microsatellite repeat sequences of Chinese hamster, 中国实验动物学报, 2011, 第 6 作者
(138) Transcriptome and expression profiling analysis revealed changes of multiple signaling pathways involved in immunity in the large yellow croaker during Aeromonas hydrophila infection, BMC GENOMICS, 2010, 通讯作者
(139) Hydroxyurea-induced global transcriptional suppression in mouse ES cells, CARCINOGENESIS, 2010, 通讯作者
(140) 寒冷诱导产热时大鼠棕色脂肪能量代谢相关蛋白谱的变化, The Alterations of Energy Metabolism-related Protein Patterns in Brown Adipose Tissue of Rats During Cold-induced Thermogenesis, 生物化学与生物物理进展, 2010, 第 5 作者
(141) A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing, GENOMICS, 2010, 通讯作者
(142) Transcriptome and expression profiling analysis revealed changes of multiple signaling pathways involved in immunity in the large yellow croaker during Aeromonas hydrophila infection, BMC GENOMICS, 2010, 通讯作者
(143) Hydroxyurea-induced global transcriptional suppression in mouse ES cells, CARCINOGENESIS, 2010, 通讯作者
(144) 寒冷诱导产热时大鼠棕色脂肪能量代谢相关蛋白谱的变化, The Alterations of Energy Metabolism-related Protein Patterns in Brown Adipose Tissue of Rats During Cold-induced Thermogenesis, 生物化学与生物物理进展, 2010, 第 5 作者
(145) A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing, GENOMICS, 2010, 通讯作者
(146) 羊轮状病毒NT株VP1基因的测序和分子进化分析, Sequence and evolutionary analysis of VP1 gene of Ovine rotavirus NT, 微生物学报, 2009, 第 5 作者
(147) 极端嗜盐古菌中CRISPR结构的生物信息学分析, Comparative analysis of Clustered Regularly Interspaced Short Palindromic Repeats(CRISPRs) loci in the genomes of halophilic archaea, 微生物学报, 2009, 第 4 作者
(148) 甲型H1N1流感病毒流行株基因组进化分析, 科学通报, 2009, 第 2 作者
(149) 鳜肌肉组织cDNA文库构建及其ESTs分析, Construction of muscle cDNA library and analysis of some expressed sequence tag sequences of Siniperca chutasi, 淡水渔业, 2009, 第 6 作者
(150) 鸡法氏囊三肽囊素阳性细胞cDNA酵母展示文库的筛选, Screening of cDNA Yeast Expression Library to Bursin Positive Cells of Bursa of Fabricius in Chicken, 江西农业大学学报, 2009, 第 5 作者
(151) 羊轮状病毒NT株VP1基因的测序和分子进化分析, Sequence and evolutionary analysis of VP1 gene of Ovine rotavirus NT, 微生物学报, 2009, 第 5 作者
(152) 极端嗜盐古菌中CRISPR结构的生物信息学分析, Comparative analysis of Clustered Regularly Interspaced Short Palindromic Repeats(CRISPRs) loci in the genomes of halophilic archaea, 微生物学报, 2009, 第 4 作者
(153) 甲型H1N1流感病毒流行株基因组进化分析, 科学通报, 2009, 第 2 作者
(154) 鳜肌肉组织cDNA文库构建及其ESTs分析, Construction of muscle cDNA library and analysis of some expressed sequence tag sequences of Siniperca chutasi, 淡水渔业, 2009, 第 6 作者
(155) 鸡法氏囊三肽囊素阳性细胞cDNA酵母展示文库的筛选, Screening of cDNA Yeast Expression Library to Bursin Positive Cells of Bursa of Fabricius in Chicken, 江西农业大学学报, 2009, 第 5 作者
(156) Construction of the physical map of the gpa7 locus reveals that a large segment was deleted during rice domestication, PLANT CELL REPORTS, 2008, 第 6 作者
(157) 西洋参cDNA文库构建及表达序列标签(EST)分析, Analysis of expressed sequence tags (EST) from Panax quinquefolium root, 药学学报, 2008, 第 6 作者
(158) 西洋参cDNA文库构建及表达序列标签(EST)分析, Analysis of expressed sequence tags (EST) from Panax quinquefolium root, 中国学术期刊文摘, 2008, 第 6 作者
(159) Construction of the physical map of the gpa7 locus reveals that a large segment was deleted during rice domestication, PLANT CELL REPORTS, 2008, 第 6 作者
(160) 西洋参cDNA文库构建及表达序列标签(EST)分析, Analysis of expressed sequence tags (EST) from Panax quinquefolium root, 药学学报, 2008, 第 6 作者
(161) 西洋参cDNA文库构建及表达序列标签(EST)分析, Analysis of expressed sequence tags (EST) from Panax quinquefolium root, 中国学术期刊文摘, 2008, 第 6 作者
(162) 中国华北地区汉族人群HLA两基因座的PCR-SBT分型, 中国法医学杂志, 2006, 第 3 作者
(163) 尖吻蝮毒腺cDNA文库的构建、金属蛋白酶基因克隆和序列分析, Construction of a cDNA library from Agkistrodon acutus venom gland and identification of Agkihagin, a novel transcript for metalloproteinase, 中国药理学与毒理学杂志, 2006, 第 2 作者
(164) 北京地区人群HLA-A、B、DRB1的聚合酶链反应-直接测序分型研究, HLA-A, B, DRB1 gene polymorphism of Beijing population was studied by high-resolution polymerase chain reaction sequence-based typing, 中华医学遗传学杂志, 2006, 第 4 作者
(165) 相邻碱基组分与产生SNP的转换或颠换在植物基因组中的研究, 中国科学C辑:生命科学, 2006, 第 5 作者
(166) 中国华北地区汉族人群HLA两基因座的PCR-SBT分型, 中国法医学杂志, 2006, 第 3 作者
(167) 尖吻蝮毒腺cDNA文库的构建、金属蛋白酶基因克隆和序列分析, Construction of a cDNA library from Agkistrodon acutus venom gland and identification of Agkihagin, a novel transcript for metalloproteinase, 中国药理学与毒理学杂志, 2006, 第 2 作者
(168) 北京地区人群HLA-A、B、DRB1的聚合酶链反应-直接测序分型研究, HLA-A, B, DRB1 gene polymorphism of Beijing population was studied by high-resolution polymerase chain reaction sequence-based typing, 中华医学遗传学杂志, 2006, 第 4 作者
(169) 相邻碱基组分与产生SNP的转换或颠换在植物基因组中的研究, 中国科学C辑:生命科学, 2006, 第 5 作者
(170) 猪的主要组织相容性复合体表达谱分析, 科学通报, 2005, 第 5 作者
(171) 泌乳前后家猪乳腺基因表达谱的构建以及不同猪种和不同发育时期差异表达基因的确定, 中国科学:C辑, 2005, 第 7 作者
(172) 北京、武汉、福建原发性骨质疏松症VDRⅠ、VDRⅡ-1、VDRⅡ-2基因单核苷酸多态性研究, 中国骨质疏松杂志, 2005, 第 2 作者
(173) 坛紫菜(Porphyra haitanensis)丝状孢子体EST的获取及其生物信息学分析, ACQUIREMENT AND ANALYSIS OF EXPRESSED SEQUENCE TAGS OF FILAMENTOUS SPOROPHYTE OF PORPHYRA HAITANENSIS, 海洋与湖沼, 2005, 第 3 作者
(174) 猪的主要组织相容性复合体表达谱分析, 科学通报, 2005, 第 5 作者
(175) 泌乳前后家猪乳腺基因表达谱的构建以及不同猪种和不同发育时期差异表达基因的确定, 中国科学:C辑, 2005, 第 7 作者
(176) 北京、武汉、福建原发性骨质疏松症VDRⅠ、VDRⅡ-1、VDRⅡ-2基因单核苷酸多态性研究, 中国骨质疏松杂志, 2005, 第 2 作者
(177) 坛紫菜(Porphyra haitanensis)丝状孢子体EST的获取及其生物信息学分析, ACQUIREMENT AND ANALYSIS OF EXPRESSED SEQUENCE TAGS OF FILAMENTOUS SPOROPHYTE OF PORPHYRA HAITANENSIS, 海洋与湖沼, 2005, 第 3 作者
(178) 人类基因组3pter-p26区域的序列比较分析, 中国科学:C辑, 2004, 第 10 作者
(179) 猪脂肪组织表达序列标签(ESTs)大规模测序及分析, Sequencing and Analyzing of Expressed Sequence Tags (EST) of Pig Fat Tissue, 遗传学报, 2004, 第 4 作者
(180) 人类基因组3pter-p26区域的序列比较分析, 中国科学:C辑, 2004, 第 10 作者
(181) 人类基因组3pter-p26区域的序列比较分析, 中国科学:C辑, 2004, 第 10 作者
(182) 猪脂肪组织表达序列标签(ESTs)大规模测序及分析, Sequencing and Analyzing of Expressed Sequence Tags (EST) of Pig Fat Tissue, 遗传学报, 2004, 第 4 作者
(183) 人类基因组3pter-p26区域的序列比较分析, 中国科学:C辑, 2004, 第 10 作者
(184) DNA序列测定分析仪器进展, 现代仪器, 2003, 第 1 作者
(185) DNA序列测定分析仪器进展, 现代仪器, 2003, 第 1 作者
(186) 中国广西壮族9个STR基因座遗传多态性研究, Genetic Polymorphism of 9 STR Loci in Zhuang National Minority of China, 遗传学报, 2002, 第 6 作者
(187) 中国东乡族9个STR基因座遗传多态性研究, Genetic Polymorphisms of 9 STR Loci in Dongxiang Ethic Group of China, 遗传, 2002, 第 7 作者
(188) 代谢型谷氨酸受体mGluR7的基因组结构及其家族蛋白胞外区的基因组结构比较, 科学通报, 2002, 第 10 作者
(189) 中国朝鲜族9个STR基因座遗传多态性研究, Genetic Polymorphism of 9 STR loci in Chaoxin National Minority of China, 遗传, 2002, 第 7 作者
(190) 人和鼠脑cDNA文库的建立以及全长cDNA的批量分离, 自然科学进展, 2002, 第 2 作者
(191) 中国广西壮族9个STR基因座遗传多态性研究, Genetic Polymorphism of 9 STR Loci in Zhuang National Minority of China, 遗传学报, 2002, 第 6 作者
(192) 中国东乡族9个STR基因座遗传多态性研究, Genetic Polymorphisms of 9 STR Loci in Dongxiang Ethic Group of China, 遗传, 2002, 第 7 作者
(193) 代谢型谷氨酸受体mGluR7的基因组结构及其家族蛋白胞外区的基因组结构比较, 科学通报, 2002, 第 10 作者
(194) 中国朝鲜族9个STR基因座遗传多态性研究, Genetic Polymorphism of 9 STR loci in Chaoxin National Minority of China, 遗传, 2002, 第 7 作者
(195) 人和鼠脑cDNA文库的建立以及全长cDNA的批量分离, 自然科学进展, 2002, 第 2 作者
(196) 籼稻(Oryza Sativa ssp.indica)全基因组框架序列, 科学通报, 2001, 第 16 作者
(197) 灿稻(Oryza Sativa ssp.indica)全基因组框架序列, 科学通报, 2001, 第 2 作者
(198) 籼稻(Oryza Sativa ssp.indica)全基因组框架序列, 科学通报, 2001, 第 16 作者
(199) 灿稻(Oryza Sativa ssp.indica)全基因组框架序列, 科学通报, 2001, 第 2 作者
(200) 科学发展离不开现实的环境——关于基因的对话, 中国科技月报, 2000, 第 2 作者
(201) 丁酸钠对人脑多型性胶质母细胞瘤细胞系BT—325的诱导分化, 中国医学科学院学报, 2000, 第 2 作者
(202) 人脑胶质细胞瘤分化相关基因GDR1全长cDNA的克隆和鉴定, 科学通报, 2000, 第 2 作者
(203) 科学发展离不开现实的环境——关于基因的对话, 中国科技月报, 2000, 第 2 作者
(204) 丁酸钠对人脑多型性胶质母细胞瘤细胞系BT—325的诱导分化, 中国医学科学院学报, 2000, 第 2 作者
(205) 人脑胶质细胞瘤分化相关基因GDR1全长cDNA的克隆和鉴定, 科学通报, 2000, 第 2 作者
(206) 豌豆卷须肌动蛋白Ⅱ类异型体cDNA克隆的序列分析, 中国生物化学与分子生物学报, 1999, 第 2 作者
(207) PHF2全长cDNA及剪接异构体的克隆鉴定, 科学通报, 1999, 第 4 作者
(208) 豌豆卷须肌动蛋白Ⅱ类异型体cDNA克隆的序列分析, 中国生物化学与分子生物学报, 1999, 第 2 作者
(209) PHF2全长cDNA及剪接异构体的克隆鉴定, 科学通报, 1999, 第 4 作者
(210) REDO: RNA Editing Detection in Plant Organelles Based on Variant Calling Results, Mary Ann Liebert, Inc. Publishers, 
(211) Selection for Cheaper Amino Acids Drives Nucleotide Usage at the Start of Translation in Eukaryotic Genes, Genomics, Proteomics & Bioinformatics, 通讯作者
(212) IC4R-2.0: Rice Genome Reannotation Using Massive RNA-seq Data, Genomics, Proteomics & Bioinformatics, 通讯作者
(213) REDO: RNA Editing Detection in Plant Organelles Based on Variant Calling Results, Mary Ann Liebert, Inc. Publishers, 
(214) Selection for Cheaper Amino Acids Drives Nucleotide Usage at the Start of Translation in Eukaryotic Genes, Genomics, Proteomics & Bioinformatics, 通讯作者
(215) IC4R-2.0: Rice Genome Reannotation Using Massive RNA-seq Data, Genomics, Proteomics & Bioinformatics, 通讯作者
发表著作
( 1 ) 基因组数据分析手册, handbook of genomic data analysis, 浙江大学出版社, 2003-05, 第 1 作者
( 2 ) 基因表达序列标签(EST)数据, handbook of expressed sequence tag (est) data analysis, 浙江大学出版社, 2005-05, 第 1 作者
( 3 ) 基因组学概论(第二版), Introduction to Genomics (Second edition), 科学出版社, 2016-01, 第 2 作者
( 4 ) 转录组学与精准医学, Transcriptomics and Precision Medicine, 上海交通大学, 2017-12, 第 2 作者

科研活动

   
科研项目
( 1 ) 广东潮汕食管癌发病风险预测的分子基础研究, 参与, 地方任务, 2012-05--2015-12
( 2 ) 应用组学策略选育茶薪菇新品种与人工栽培技术研究, 负责人, 中国科学院计划, 2012-01--2015-12
( 3 ) 基于第二代测序技术及比较转录组学的人参皂苷合成途径及调控网络研究, 负责人, 国家任务, 2012-01--2016-08
( 4 ) 水稻粒型分子模块系统解析, 负责人, 中国科学院计划, 2013-08--2017-12
( 5 ) 2016YFC1202804, 负责人, 国家任务, 2016-07--2018-12
( 6 ) 精准医学大数据处理和利用的标准化技术体系建设, 参与, 国家任务, 2016-07--2019-12
( 7 ) 转录组纵深信息挖掘, 负责人, 国家任务, 2006-12--2011-08
( 8 ) 基于小鼠多组织和细胞链特异性RNA-seq数据的Antisense RNA 分析及数据库构建, 负责人, 国家任务, 2013-01--2016-12
( 9 ) 生物学重要基础数据资源整理及数据库构建, 负责人, 国家任务, 2020-01--2022-12
( 10 ) 特殊环境微生物底盘细胞的设计与构建, 参与, 国家任务, 2021-12--2026-11