Microbiology

Fishes disease

   

​（1） Gut microbiota modulation and immunity response induced by Citrobacter freundii strain GC01 in grass carp (Ctenopharyngodon idellus), Aquaculture, 2020, 通讯作者
（2） 副地衣芽孢杆菌FA6全基因组测序及比较基因组学分析, 水生生物学报, 2020, 通讯作者
（3） Gut segments outweigh the diet in shaping the intestinal microbiota composition in grass carp Ctenopharyngodon idellus, AMB Express, 2019, 第 5 作者
（4） Growth performance, immunity and intestinal microbiota of swamp eel (Monopterus albus) fed a diet supplemented with house fly larvae (Musca domestica), Aquaculture Nutrition, 2019, 通讯作者
（5） Transcriptome analysis of grass carp provides insights into disease-related genes and novel regulation pattern of bile acid feedback in response to lithocholic acid, Aquaculture, 2019, 通讯作者
（6） Adhesion and colonization properties of potentially probiotic Bacillus paralicheniformis strain FA6 isolated from grass carp intestine, Fisheries Science, 2019, 通讯作者
（7） 草鱼肠道微生物抗生素抗性基因研究, 水生态学杂志, 2019, 第 3 作者
（8） Transcriptome analysis of grass carp provides insights into disease-related genes and novel regulation pattern of bile acid feedback in response to lithocholic acid, Aquaculture, 2018, 第 2 作者
（9） Dietary bile salt types influence the composition of biliary bile acids and gut microbiota in grass carp, Frontiers in Microbiology, 2018, 第 2 作者
（10） Altered gut microbiota associated with intestinal disease in grass carp (Ctenopharyngodon idellus), World Journal of Microbiology and Biotechnology, 2018, 通讯作者
（11） 草鱼肠道黏膜厌氧细菌的分离与鉴定, 水生生物学报, 2018, 通讯作者
（12） Starvation influences the microbiota assembly and expression of immunity-related genes in the intestine of grass carp (Ctenopharyngodon idellus), Aquaculture, 2018, 通讯作者
（13） Two biomass preparation methods provide insights into studying microbial communities of intestinal mucosa in grass carp (Ctenopharyngodon idellus), Aquaculture Research,, 2017, 第 5 作者
（14） 草鱼肠道酸碱度的研究, 水生生物 学报, 2017, 第 2 作者
（15） 草鱼不同组织胆汁酸组成分析, 水生生物学报, 2017, 通讯作者
（16） The influence of diet on the grass carp intestinal microbiota and bile acids, Aquaculture Research, 2017, 通讯作者
（17） Metatranscriptomic discovery of plant biomass-degrading capacity from grass carp intestinal microbiomes, FEMS microbiology ecology, 2015, 第 1 作者
（18） 草鱼肠道微生物对食物改变适应性变化的研究, Study on the adaptation changes of intestinal microbiota in Ctenopharyngodon idellus fed on different diets, 淡水渔业, 2015, 通讯作者
（19） Diversity and activity of cellulolytic bacteria, isolated from the gut contents of grass carp (Ctenopharyngodon idellus) (Valenciennes) fed on Sudan grass (Sorghum sudanense) or artificial feedstuffs, Aquaculture Research, 2014, 第 2 作者
（20） Diversity of autochthonous bacterial communities in the intestinal mucosa of grass carp (Ctenopharyngodon idellus) (Valenciennes) determined by culture-dependent and culture-independent techniques , Aquaculture Research, 2014, 通讯作者
（21） 草鱼肠道纤维素降解细菌的分离与鉴定, 水生生物学报, 2014, 通讯作者
（22） 禁食条件下草鱼肠粘膜可培养纤维素降解菌的分离与鉴定, 淡水渔业, 2014, 第 4 作者
（23） Characterization of the bacterial community associated with early developmental stages of grass carp (Ctenopharyngodon idella), Aquaculture Research, 2014, 第 2 作者
（24） Intestinal microbiota of gibel carp (Carassius auratus gibelio) and its origin as revealed by 454 pyrosequencing, World Journal of Microbiology and Biotechnology, 2013, 第 1 作者
（25） Characterization of bacterial community in the stomach of yellow catfish (Pelteobagrus fulvidraco), World Journal of Microbiology and Biotechnology, 2012, 第 1 作者
（26） Composition, diversity, and origin of the bacterial community in grass carp intestine, PLoS ONE, 2012, 第 1 作者
（27） 主养草鱼池塘底泥微生物群落多样性研究, 淡水渔业, 2011, 通讯作者
（28） Microbial diversity of intestinal contents and mucus in yellow catfish (Pelteobagrus fulvidraco), Aquaculture, 2010, 第 1 作者

Our research interests aim to elucidate the basic principles that govern interactions within the intestinal microbiota and between the commensal  microbes and the host. With grass carp (Ctenopharyngodon idellus) as the model organism, we apply systemic approaches and genetic tools to explore the effects of perturbations in the intestinal environment, such as changes in diet, microbial community composition, pathogen exposure, host genotype, and microbiota-targeted small molecules.

Specifically, our research focuses on the following aspects:

1. Relationships between intestinal microbiota and the host

a) Understanding the impact of intestinal microbiota on host's immune responses

b) Relationship between microbial communities in aquatic ecosystems and disease occurrence in aquatic animals

c) Roles of intestinal microbiome in host's nutrient metabolism

2. Mechanisms of beneficial microbes in regulating the aquaculture environment 

已指导学生

张晶  硕士研究生  071004-水生生物学  

丰文雯  硕士研究生  085238-生物工程  

赵帝  硕士研究生  071004-水生生物学  

秦路  硕士研究生  085238-生物工程  

向金花  硕士研究生  071004-水生生物学  

范腾霸  硕士研究生  085238-生物工程  

现指导学生

陈思佳  硕士研究生  071004-水生生物学  

昝子叶  硕士研究生  071004-水生生物学  

张昊睿  硕士研究生  071004-水生生物学