基本信息
刘仁义  男  博导  中国科学院分子植物科学卓越创新中心
电子邮件: ryliu@sibs.ac.cn
通信地址: 上海市松江区辰花路3888号三号门科研中心
邮政编码:

招生信息

   
招生方向
生物信息学

教育背景

2001-09--2005-06   美国乔治亚大学   博士研究生
1997-09--2001-06   美国乔治亚大学   硕士研究生
1994-09--1997-06   中国科学院研究生院   硕士研究生
1987-09--1991-06   武汉大学   本科

工作经历

   
工作简历
2012-07~现在, 中国科学院上海生命科学研究院植物逆境生物学研究中心, 研究员
2007-09~2014-06,美国加利福尼亚大学河滨分校, 助理教授
2006-01~2007-08,美国亚利桑那大学, 博士后
2001-09~2005-06,美国乔治亚大学, 博士研究生
1997-09~2001-06,美国乔治亚大学, 硕士研究生
1994-09~1997-06,中国科学院研究生院, 硕士研究生
1987-09~1991-06,武汉大学, 本科

出版信息

   
发表论文
(1) Phloem transcriptome signatures underpin the physiological differentiation of the pedicel, stalk and fruit of cucumber (Cucumis sativus L.), Plant and Cell Physiology, 2016, 通讯作者
(2) Coupling of histone methylation and RNA processing by the nuclear mRNA cap-binding complex, Nature Plants, 2016, 第 4 作者
(3) Integration of Hormonal and Nutritional Cues Orchestrates Progressive Corolla Opening, Plant Physiology, 2016, 通讯作者
(4) Genome-Wide Identification and Characterization of microRNAs in Developing Grains of Zea mays L., Plos ONE, 2016, 第 4 作者
(5) ITIS, a bioinformatics tool for accurate identification of transposon insertion sites using next-generation sequencing data, BMC Bioinformatics, 2015, 通讯作者
(6) Comparative physiological, metabolomic, and transcriptomic analyses reveal mechanisms of improved abiotic stress resistance in bermudagrass [Cynodon dactylon (L). Pers.] by exogenous melatonin, Journal of Experimental Botany, 2015, 通讯作者
(7) Asymmetric transcriptomic signatures between the cob and florets in the maize ear under optimal- and low-nitrogen conditions at silking, and functional characterization of amino acid transporters ZmAAP4 and ZmVAAT3, Journal of Experimental Botany, 2015, 通讯作者
(8) Transcriptomic analysis reveals the roles of microtubule-related genes and transcription factors in fruit length regulation in cucumber (Cucumis sativus L.), Scientific Reports, 2015, 第 4 作者
(9) Genome-wide analysis of tomato long non-coding RNAs and identification as endogenous target mimic for microRNA in response to TYLCV infection, Scientific Reports, 2015, 第 4 作者
(10) Non-coding RNAs as potent tools for crop improvement, National Science Review, 2014, 第 1 作者
(11) Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.), Journal of Experimental Botany, 2014, 通讯作者
(12) Roles of small RNAs in soybean defense against Phytophthora sojae infection, The Plant Journal, 2014, 第 4 作者
(13) Regulation of active DNA demethylation by an α-crystallin domain protein in Arabidopsis, Molecular Cell, 2014, 第 4 作者
(14) Arabidopsis EDM2 promotes IBM1 distal polyadenylation and regulates genome DNA methylation patterns, PNAS, 2014, 第 4 作者
(15) A glimpse of Escherichia coli O157:H7 survival in soils from eastern China, Science of the Total Environment, 2014, 第 4 作者
(16) Phylogenetic analysis reveals dynamic evolution of the poly(A)-binding protein gene family in plants, BMC Evolutionary Biology, 2014, 第 2 作者
(17) Comparative expression profiling reveals gene functions in female meiosis and gametophyte development in Arabidopsis, The Plant Journal, 2014, 第 4 作者
(18) STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis, Nucleic Acids Research, 2013, 第 1 作者
(19) Mechanisms of small RNA generation from cis-NATs in response to environmental and developmental cues, Molecular Plant, 2013, 通讯作者
(20) Abiotic stress-associated microRNAs in plants: discovery, expression analysis, and evolution, Front Biology, 2013, 通讯作者
(21) Transcriptome analysis of medicinal plant Salvia miltiorrhiza and identification of genes related to tanshinone biosynthesis, PLoS One, 2013, 第 4 作者
(22) Transcription repressor HANABA TARANU controls flower development by integrating the actions of multiple hormones, floral organ specification genes, and GATA3 family genes in Arabidopsis, The Plant Cell, 2013, 第 4 作者
(23) The unique evolution of the programmed cell death 4 protein in plants, BMC Evolutionary Biology, 2013, 第 2 作者
(24) The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis, The EMBO Journal, 2013, 第 4 作者
(25) The expression analysis of silk gland-enriched intermediate-size non-coding RNAs in silkworm Bombyxmori, Insect Science, 2013, 第 4 作者
(26) Maize LAZY1 mediates shoot gravitropism and inflorescence development through regulating auxin transport, auxin signaling, and light response, Plant Physiology, 2013, 第 4 作者
(27) DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV, PNAS, 2013, 第 4 作者
(28) A Pre-mRNA-splicing factor is required for RNA-directed DNA methylation in Arabidopsis, PLoS Genetics, 2013, 第 4 作者
(29) A DEAD box RNA helicase is critical for pre-mRNA splicing, cold-responsive gene regulation, and cold tolerance in Arabidopsis, The Plant Cell, 2013, 第 4 作者

科研活动

   
科研项目
( 1 ) Deciphering regulatory networks of Legume seed storage metabolism, 参与, 国家级, 2015-01--2018-12
( 2 ) 中科院****, 主持, 部委级, 2015-01--2017-12
参与会议
(1)ITIS, a bioinformatics tool for accurate identification of transposon insertion sites using next-generation sequencing data   第三届全国计算生物学与生物信息学学术会议   2016-04-15