基本信息
刘仁义  男  博导  中国科学院分子植物科学卓越创新中心
电子邮件: ryliu@sibs.ac.cn
通信地址: 上海市松江区辰花路3888号三号门科研中心
邮政编码:
部门/实验室:逆境中心

招生信息

   
招生方向
生物信息学

教育背景

2001-09--2005-06   美国乔治亚大学   博士研究生
1997-09--2001-06   美国乔治亚大学   硕士研究生
1994-09--1997-06   中国科学院研究生院   硕士研究生
1987-09--1991-06   武汉大学   本科

工作经历

   
工作简历
2012-07~现在, 中国科学院上海生命科学研究院植物逆境生物学研究中心, 研究员
2007-09~2014-06,美国加利福尼亚大学河滨分校, 助理教授
2006-01~2007-08,美国亚利桑那大学, 博士后
2001-09~2005-06,美国乔治亚大学, 博士研究生
1997-09~2001-06,美国乔治亚大学, 硕士研究生
1994-09~1997-06,中国科学院研究生院, 硕士研究生
1987-09~1991-06,武汉大学, 本科

专利与奖励

   

出版信息

   
发表论文
(1) Phloem transcriptome signatures underpin the physiological differentiation of the pedicel, stalk and fruit of cucumber (Cucumis sativus L.), Plant and Cell Physiology, 2016, 第 11 作者
(2) Coupling of histone methylation and RNA processing by the nuclear mRNA cap-binding complex, Nature Plants, 2016, 第 4 作者
(3) Integration of Hormonal and Nutritional Cues Orchestrates Progressive Corolla Opening, Plant Physiology, 2016, 第 11 作者
(4) Genome-Wide Identification and Characterization of microRNAs in Developing Grains of Zea mays L., Plos ONE, 2016, 第 4 作者
(5) ITIS, a bioinformatics tool for accurate identification of transposon insertion sites using next-generation sequencing data, BMC Bioinformatics, 2015, 第 11 作者
(6) Comparative physiological, metabolomic, and transcriptomic analyses reveal mechanisms of improved abiotic stress resistance in bermudagrass [Cynodon dactylon (L). Pers.] by exogenous melatonin, Journal of Experimental Botany, 2015, 第 11 作者
(7) Asymmetric transcriptomic signatures between the cob and florets in the maize ear under optimal- and low-nitrogen conditions at silking, and functional characterization of amino acid transporters ZmAAP4 and ZmVAAT3, Journal of Experimental Botany, 2015, 第 11 作者
(8) Transcriptomic analysis reveals the roles of microtubule-related genes and transcription factors in fruit length regulation in cucumber (Cucumis sativus L.), Scientific Reports, 2015, 第 4 作者
(9) Genome-wide analysis of tomato long non-coding RNAs and identification as endogenous target mimic for microRNA in response to TYLCV infection, Scientific Reports, 2015, 第 4 作者
(10) Non-coding RNAs as potent tools for crop improvement, National Science Review, 2014, 第 1 作者
(11) Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.), Journal of Experimental Botany, 2014, 第 11 作者
(12) Roles of small RNAs in soybean defense against Phytophthora sojae infection, The Plant Journal, 2014, 第 4 作者
(13) Regulation of active DNA demethylation by an α-crystallin domain protein in Arabidopsis, Molecular Cell, 2014, 第 4 作者
(14) Arabidopsis EDM2 promotes IBM1 distal polyadenylation and regulates genome DNA methylation patterns, PNAS, 2014, 第 4 作者
(15) A glimpse of Escherichia coli O157:H7 survival in soils from eastern China, Science of the Total Environment, 2014, 第 4 作者
(16) Phylogenetic analysis reveals dynamic evolution of the poly(A)-binding protein gene family in plants, BMC Evolutionary Biology, 2014, 第 2 作者
(17) Comparative expression profiling reveals gene functions in female meiosis and gametophyte development in Arabidopsis, The Plant Journal, 2014, 第 4 作者
(18) STA1, an Arabidopsis pre-mRNA processing factor 6 homolog, is a new player involved in miRNA biogenesis, Nucleic Acids Research, 2013, 第 1 作者
(19) Mechanisms of small RNA generation from cis-NATs in response to environmental and developmental cues, Molecular Plant, 2013, 第 11 作者
(20) Abiotic stress-associated microRNAs in plants: discovery, expression analysis, and evolution, Front Biology, 2013, 第 11 作者
(21) Transcriptome analysis of medicinal plant Salvia miltiorrhiza and identification of genes related to tanshinone biosynthesis, PLoS One, 2013, 第 4 作者
(22) Transcription repressor HANABA TARANU controls flower development by integrating the actions of multiple hormones, floral organ specification genes, and GATA3 family genes in Arabidopsis, The Plant Cell, 2013, 第 4 作者
(23) The unique evolution of the programmed cell death 4 protein in plants, BMC Evolutionary Biology, 2013, 第 2 作者
(24) The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis, The EMBO Journal, 2013, 第 4 作者
(25) The expression analysis of silk gland-enriched intermediate-size non-coding RNAs in silkworm Bombyxmori, Insect Science, 2013, 第 4 作者
(26) Maize LAZY1 mediates shoot gravitropism and inflorescence development through regulating auxin transport, auxin signaling, and light response, Plant Physiology, 2013, 第 4 作者
(27) DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV, PNAS, 2013, 第 4 作者
(28) A Pre-mRNA-splicing factor is required for RNA-directed DNA methylation in Arabidopsis, PLoS Genetics, 2013, 第 4 作者
(29) A DEAD box RNA helicase is critical for pre-mRNA splicing, cold-responsive gene regulation, and cold tolerance in Arabidopsis, The Plant Cell, 2013, 第 4 作者

科研活动

   
科研项目
( 1 ) Deciphering regulatory networks of Legume seed storage metabolism, 参与, 国家级, 2015-01--2018-12
( 2 ) 中科院****, 主持, 部委级, 2015-01--2017-12
参与会议
(1)ITIS, a bioinformatics tool for accurate identification of transposon insertion sites using next-generation sequencing data   第三届全国计算生物学与生物信息学学术会议   2016-04-15

合作情况