基本信息
赵文明  男  博导  中国科学院北京基因组研究所(国家生物信息中心)
电子邮件: zhaowm@big.ac.cn
通信地址: 北京市朝阳区北辰西路1号院
邮政编码: 100101

研究领域

生物信息大数据

生物信息数据库

高性能计算与云计算

招生信息

招收具有生物信息、数理或计算机背景的硕士及博士研究生。

招生专业
081203-计算机应用技术
081202-计算机软件与理论
071010-生物化学与分子生物学
招生方向
生物信息

教育背景

2004-02--2006-06   北京航空航天大学   硕士
1997-09--2001-07   西安工业学院   学士
学位
1997年9月-2001年7月 西安工业大学 计算机科学与技术专业 学士学位

2006年2月-2008年6月 北京航空航天大学 计算机应用技术专业 硕士学位

工作经历


工作简历
2018-05~现在, 北京基因组研究所, 正高级工程师
2011-12~2018-05,北京基因组研究所, 高级工程师
2008-04~2011-11,北京基因组研究所, 生物信息工程师
2001-07~2004-06,北京华大基因有限公司, 助理工程师
社会兼职
2022-12-15-今,中国档案学会科技档案与科学数据管理学术委员会委员,
2022-10-20-今,国家重点研发计划“生物与信息融合(BT与IT融合)”重点专项专家组成员,
2022-08-06-2027-08-06,中国医药教育协会医学基因组学与生物信息学专业委员会委员,
2022-06-01-今,云南省西南及跨境生物多样性数据信息重点实验室第一届学术委员会委员,

教授课程

生物信息大数据挖掘分析和实践
生物大数据挖掘、分析与实践技术

专利与奖励


奖励信息
(1) 中国科学院关键技术人才, 院级, 2015
专利成果
[1] 唐碧霞, 赵文明, 朱军伟, 王彦青. 面向生物组学大数据计算的云平台系统及方法. CN: CN106022007B, 2019-03-26.
[2] 孙玉彬, 赵文明. 生物信息学高性能计算作业调度及系统管理套件. CN: CN107273196A, 2017-10-20.

出版信息

   
发表论文
[1] Enhui Jin, Dongli Zhao, Gangao Wu, Junwei Zhu, Zhonghuang Wang, Zhiyao Wei, Sisi Zhang, Anke Wang, Bixia Tang, Xu Chen, Yanling Sun, Zhe Zhang, Wenming Zhao, Yuanguang Meng. OBIA: An Open Biomedical Imaging Archive. GENOMICS, PROTEOMICS & BIOINFORMATICS[J]. 2024, 第 13 作者  通讯作者  http://dx.doi.org/10.1016/j.gpb.2023.09.003.
[2] Sun, Yanling, Zheng, Xinchang, Wang, Guoliang, Wang, Yibo, Chen, Xiaoning, Sun, Jiani, Xiong, Zhuang, Zhang, Sisi, Wang, Tianyi, Fan, Zhuojing, Bu, Congfan, Bao, Yiming, Zhao, Wenming. MACdb: A Curated Knowledgebase for Metabolic Associations across Human Cancers. MOLECULAR CANCER RESEARCH[J]. 2023, 第 13 作者  通讯作者  21(7): 691-697, http://dx.doi.org/10.1158/1541-7786.MCR-22-0909.
[3] Yibo Wang, Yihao Lin, Sicheng Wu, Bixia Tang, Wenming Zhao. BioKA: a curated and integrated biomarker knowledgebase for animals. Nucleic Acids Research[J]. 2023, 第 5 作者  通讯作者  https://doi.org/10.1093/nar/gkad873.
[4] Duan, Guangya, Wu, Gangao, Chen, Xiaoning, Tian, Dongmei, Li, Zhaohua, Sun, Yanling, Du, Zhenglin, Hao, Lili, Song, Shuhui, Gao, Yuan, Xiao, Jingfa, Zhang, Zhang, Bao, Yiming, Tang, Bixia, Zhao, Wenming. HGD: an integrated homologous gene database across multiple species. NUCLEIC ACIDS RESEARCH[J]. 2023, 第 15 作者  通讯作者  51(D1): D994-D1002, http://dx.doi.org/10.1093/nar/gkac970.
[5] 薛勇彪. Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2023. Nucleic Acids Research[J]. 2022, 
[6] 李茹姣, 张欣, 宋述慧, 王彦青, 邹东, 肖景发, 赵文明, 章张, 鲍一明. 基因组科学数据的安全管理与应用. 大数据[J]. 2022, 第 7 作者8(1): 37-45, http://lib.cqvip.com/Qikan/Article/Detail?id=7106421730.
[7] Zhao, Dongli, Zhang, Zhe, Wang, Zhonghuang, Du, Zhenglin, Wu, Meng, Zhang, Tingting, Zhou, Jialu, Zhao, Wenming, Meng, Yuanguang. Diagnosis and Prediction of Endometrial Carcinoma Using Machine Learning and Artificial Neural Networks Based on Public Databases. GENES[J]. 2022, 第 8 作者  通讯作者  13(6): https://doaj.org/article/a8988489da0b42c999887aefca31b038.
[8] Yu, Dalang, Zhu, Junwei, Yang, Jianing, Pan, YiHsuan, Mu, Hailong, Cao, Ruifang, Tang, Bixia, Duan, Guangya, Hao, ZiQian, Dai, Long, Zhao, GuoPing, Zhang, YaPing, Zhao, Wenming, Zhang, Guoqing, Li, Haipeng. Global cold-chain related SARS-CoV-2 transmission identified by pandemic-scale phylogenomics. ZOOLOGICAL RESEARCH[J]. 2022, 第 13 作者  通讯作者  43(5): 871-874, http://dx.doi.org/10.24272/j.issn.2095-8137.2022.238.
[9] Yu, Dalang, Yang, Xiao, Tang, Bixia, Pan, YiHsuan, Yang, Jianing, Duan, Guangya, Zhu, Junwei, Hao, ZiQian, Mu, Hailong, Dai, Long, Hu, Wangjie, Zhang, Mochen, Cui, Ying, Jin, Tong, Li, CuiPing, Ma, Lina, Su, Xiao, Zhang, Guoqing, Zhao, Wenming, Li, Haipeng, Language Translation Team. Coronavirus GenBrowser for monitoring the transmission and evolution of SARS-CoV-2. BRIEFINGS IN BIOINFORMATICS[J]. 2022, 第 11 作者23(2): http://dx.doi.org/10.1093/bib/bbab583.
[10] Chen, Tingting, Chen, Xu, Zhang, Sisi, Zhu, Junwei, Tang, Bixia, Wang, Anke, Dong, Lili, Zhang, Zhewen, Yu, Caixia, Sun, Yanling, Chi, Lianjiang, Chen, Huanxin, Zhai, Shuang, Sun, Yubin, Lan, Li, Zhang, Xin, Xiao, Jingfa, Bao, Yiming, Wang, Yanqing, Zhang, Zhang, Zhao, Wenming. The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types. GENOMICS PROTEOMICS & BIOINFORMATICS[J]. 2021, 第 21 作者  通讯作者  19(4): 578-583, http://dx.doi.org/10.1016/j.gpb.2021.08.001.
[11] Li, Cuiping, Tian, Dongmei, Tang, Bixia, Liu, Xiaonan, Teng, Xufei, Zhao, Wenming, Zhang, Zhang, Song, Shuhui. Genome Variation Map: a worldwide collection of genome variations across multiple species. NUCLEIC ACIDS RESEARCH[J]. 2021, 第 6 作者49(D1): D1186-D1191, http://dx.doi.org/10.1093/nar/gkaa1005.
[12] 李茹姣, 张欣, 宋述慧, 王彦青, 邹东, 肖景发, 赵文明, 章张, 鲍一明. 基因组科学数据的安全管理与应用. 大数据[J]. 2021, 第 7 作者8(1): 37-45, http://lib.cqvip.com/Qikan/Article/Detail?id=7106421730.
[13] Chen, Meili, Ma, Yingke, Wu, Song, Zheng, Xinchang, Kang, Hongen, Sang, Jian, Xu, Xingjian, Hao, Lili, Li, Zhaohua, Gong, Zheng, Xiao, Jingfa, Zhang, Zhang, Zhao, Wenming, Bao, Yiming. Genome Warehouse: A Public Repository Housing Genome-scale Data. GENOMICS PROTEOMICS & BIOINFORMATICS[J]. 2021, 第 13 作者19(4): 584-589, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=7184425&detailType=1.
[14] Liu, Yuanming, Wang, Zhonghuang, Wu, Xiaoyuan, Zhu, Junwei, Luo, Hong, Tian, Dongmei, Li, Cuiping, Luo, Jingchu, Zhao, Wenming, Hao, Huaiqing, Jing, HaiChun. SorGSD: updating and expanding the sorghum genome science database with new contents and tools. BIOTECHNOLOGY FOR BIOFUELS[J]. 2021, 第 9 作者  通讯作者  14(1): http://dx.doi.org/10.1186/s13068-021-02016-7.
[15] Wang, ZhongHuang, Zhu, QiangHui, Li, Xin, Zhu, JunWei, Tian, DongMei, Zhang, SiSi, Kang, HaiLong, Li, CuiPing, Dong, LiLi, Zhao, WenMing, Li, MengHua. iSheep: an Integrated Resource for Sheep Genome, Variant and Phenotype. FRONTIERS IN GENETICS[J]. 2021, 第 10 作者  通讯作者  12: http://dx.doi.org/10.3389/fgene.2021.714852.
[16] Zhang, Yuansheng, Zou, Dong, Zhu, Tongtong, Xu, Tianyi, Chen, Ming, Niu, Guangyi, Zong, Wenting, Pan, Rong, Jing, Wei, Sang, Jian, Liu, Chang, Xiong, Yujia, Sun, Yubin, Zhai, Shuang, Chen, Huanxin, Zhao, Wenming, Xiao, Jingfa, Bao, Yiming, Hao, Lili, Zhang, Zhang. Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels. NUCLEIC ACIDS RESEARCH[J]. 2021, 第 16 作者50(D1): D1016-D1024, http://dx.doi.org/10.1093/nar/gkab878.
[17] 张思思, 陈旭, 陈婷婷, 朱军伟, 唐碧霞, 王安可, 董丽莉, 张哲文, 孙艳玲, 俞彩霞, 翟爽, 孙玉彬, 陈焕新, 杜政霖, 肖景发, 章张, 鲍一明, 王彦青, 赵文明. GSA-Human:人类遗传资源数据管理的公共系统. 遗传[J]. 2021, 第 19 作者43(10): 988-993, http://lib.cqvip.com/Qikan/Article/Detail?id=7105842040.
[18] Wang, Kun, Wang, Jun, Zhu, Chenglong, Yang, Liandong, Ren, Yandong, Ruan, Jue, Fan, Guangyi, Hu, Jiang, Xu, Wenjie, Bi, Xupeng, Zhu, Youan, Song, Yue, Chen, Huatao, Ma, Tiantian, Zhao, Ruoping, Jiang, Haifeng, Zhang, Bin, Feng, Chenguang, Yuan, Yuan, Gan, Xiaoni, Li, Yongxin, Zeng, Honghui, Liu, Qun, Zhang, Yaolei, Shao, Feng, Hao, Shijie, Zhang, He, Xu, Xun, Liu, Xin, Wang, Depeng, Zhu, Min, Zhang, Guojie, Zhao, Wenming, Qiu, Qiang, He, Shunping, Wang, Wen. African lungfish genome sheds light on the vertebrate water-to-land transition. CELL[J]. 2021, 第 33 作者  通讯作者  184(5): 1362-1376, http://dx.doi.org/10.1016/j.cell.2021.01.047.
[19] Xue, Yongbiao, Bao, Yiming, Zhang, Zhang, Zhao, Wenming, Xiao, Jingfa, He, Shunmin, Zhang, Guoqing, Li, Yixue, Zhao, Guoping, Chen, Runsheng, Song, Shuhui, Ma, Lina, Zou, Dong, Tian, Dongmei, Li, Cuiping, Zhu, Junwei, Gong, Zheng, Chen, Meili, Wang, Anke, Ma, Yingke, Li, Mengwei, Teng, Xufei, Cui, Ying, Duan, Guangya, Zhang, Mochen, Jin, Tong, Shi, Chengmin, Du, Zhenglin, Zhang, Yadong, Liu, Chuandong, Li, Rujiao, Zeng, Jingyao, Hao, Lili, Jiang, Shuai, Chen, Hua, Han, Dali, Yongbiao, Xue, Zhang, Tao, Kang, Wang, Qu, Jing, Zhang, Weiqi, Liu, GuangHui, Liu, Lin, Zhang, Yang, Niu, Guangyi, Zhu, Tongtong, Feng, Changrui, Liu, Xiaonan, Zhang, Yuansheng, Li, Zhao, Chen, Ruru, Li, Qianpeng, Hua, Zhongyi, Jiang, Chao, Chen, Ziyuan, He, Fangshu, Zhao, Yuyang, Jin, Yan, Huang, Luqi, Yuan, Yuan, Zhou, Chenfen, Xu, Qingwei, He, Sheng, Ye, Wei, Cao, Ruifang, Wang, Pengyu, Ling, Yunchao, Yan, Xing, Wang, Qingzhong, Du, Qiang, Zong, Wenting, Kang, Hongen, Xiong, Zhuang, Huan, Wendi, Zhang, Sirui, Xia, Qiguang, Fan, Xiaojuan, Wang, Zefeng, Chen, Xu, Chen, Tingting, Zhang, Sisi, Tang, Bixia, Dong, Lili, Zhang, Zhewen, Wang, Zhonghuang, Kang, Hailong, Wang, Yanqing, Wu, Song, Wang, Honggen, Chen, Ming, Liu, Chang, Xiong, Yujia, Shao, Xueying, Li, Yanyan, Zhou, Honghong, Chen, Xiaomin, Zheng, Yu, Kang, Quan, Hao, Di, Zhang, Lili, Luo, Huaxia, Hao, Yajing, Zhang, Peng, Nie, Zhi, Yu, Shuhuan, Yang, Fei, Sang, Jian, Li, Zhaohua, Zhang, Xiangquan, Zhou, Qing, Zhai, Shuang, Zhang, Yaping, Wang, Guodong, Zhu, Qianghui, Li, Xin, Li, Menghua, Yan, Jun, Li, Chen, Wang, Zhennan, Wang, Xiangfeng, Liu, Yuanming, Luo, Hong, Wu, Xiaoyuan, Jing, HaiChun, Song, Tinrui, Zhao, Yi, Mehmood, Furrukh, Ali, Shahid, Ali, Amjad, Saleem, Shoaib, Hussain, Irfan, Abbasi, Amir A, Zuo, Zhixiang, Ren, Jian, Zhang, Xinxin, Xiao, Yun, Li, Xia, Tu, Yiran, Xue, Yu, Wu, Wanying, Ji, Peifeng, Zhao, Fangqing, Meng, Xianwen, Peng, Di, Luo, Hao, Gao, Feng, Ning, Wanshan, Lin, Shaofeng, Liu, Teng, Guo, AnYuan, Yuan, Hao, Zhang, Yong E, Tan, Xiaodan, Zhang, Weizhi, Xie, Yubin, Wang, Chenwei, Liu, ChunJie, Yang, DeChang, Tian, Feng, Gao, Ge, Tang, Dachao, Yao, Lan, Cui, Qinghua, An, Ni A, Li, ChuanYun, Luo, XiaoTong. Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. NUCLEIC ACIDS RESEARCH[J]. 2021, 第 4 作者  通讯作者  49(D1): D18-D28, http://dx.doi.org/10.1093/nar/gkaa1022.
[20] Gong, Zheng, Zhu, JunWei, Li, CuiPing, Jiang, Shuai, Ma, LiNa, Tang, BiXia, Zou, Dong, Chen, MeiLi, Sun, YuBin, Song, ShuHui, Zhang, Zhang, Xiao, JingFa, Xue, YongBiao, Bao, YiMing, Du, ZhengLin, Zhao, WenMing. An online coronavirus analysis platform from the National Genomics Data Center. ZOOLOGICAL RESEARCH[J]. 2020, 第 16 作者  通讯作者  41(6): 705-708, http://lib.cqvip.com/Qikan/Article/Detail?id=7103487080.
[21] Qi Liu, Shilei Zhao, ChengMin Shi, Shuhui Song, Sihui Zhu, Yankai Su, Wenming Zhao, Mingkun Li, Yiming Bao, Yongbiao Xue, Hua Chen, 陈华. Population Genetics of SARS-CoV-2: Disentangling Effects of Sampling Bias and Infection Clusters. GENOMICS, PROTEOMICS & BIOINFORMATICS[J]. 2020, 第 7 作者
[22] 赵文明, 宋述慧, 陈梅丽, 邹东, 马利娜, 马英克, 李茹姣, 郝丽丽, 李翠萍, 田东梅, 唐碧霞, 王彦青, 朱军伟, 陈焕新, 章张, 薛勇彪, 鲍一明. 2019新型冠状病毒信息库. 遗传[J]. 2020, 第 1 作者42(2): 212-221, https://kns.cnki.net/KCMS/detail/detail.aspx?dbcode=CJFQ&dbname=CJFDLAST2020&filename=YCZZ202002009&v=MjI0MDZZUzdEaDFUM3FUcldNMUZyQ1VSN3FlWitkcUZDam5XN3pPUEM3UmRMRzRITkhNclk5RmJZUjhlWDFMdXg=.
[23] Zhang, Zhang, Song, Shuhui, Yu, Jun, Zhao, Wenming, Xiao, Jingfa, Bao, Yiming. The Elements of Data Sharing. GENOMICS PROTEOMICS & BIOINFORMATICS[J]. 2020, 第 4 作者18(1): 1-4, http://lib.cqvip.com/Qikan/Article/Detail?id=00002HUHLL7G7JP0MPDO8JP1MNR.
[24] Zhang, Zhang, Zhao, Wenming, Xiao, Jingfa, Bao, Yiming, He, Shunmin, Zhang, Guoqing, Li, Yixue, Zhao, Guoping, Chen, Runsheng, Gao, Yang, Zhang, Chao, Yuan, Liyun, Xu, Shuhua, Ning, Zhilin, Lu, Yan, Zeng, Jingyao, Yuan, Na, Zhu, Junwei, Pan, Mengyu, Zhang, Hao, Wang, Qi, Shi, Shuo, Jiang, Meiye, Lu, Mingming, Qian, Qiheng, Gao, Qianwen, Shang, Yunfei, Wang, Jinyue, Du, Zhenglin, Tian, Dongmei, Wang, Pei, Tang, Bixia, Li, Cuiping, Teng, Xufei, Liu, Xiaonan, Zou, Dong, Song, Shuhui, Xiong, Zhuang, Li, Mengwei, Yang, Fei, Ma, Yingke, Sang, Jian, Li, Zhaohua, Li, Rujiao, Wang, Zhonghuang, Zhu, Qianghui, Li, Xin, Zhang, Sisi, Kang, Hailong, Dong, Lili, Ying, Cui, Duan, Guangya, Li, Menghua, Zhi, Xiaoyang, Ling, Yunchao, Cao, Ruifang, Jiang, Zhao, Zhou, Haokui, Lv, Daqing, Liu, Wan, Klenk, HansPeter, Zhang, Yadong, Zhang, Zhewen, Chen, Tingting, Chen, Xu, Wang, Yanqing, Wu, Song, Gong, Zheng, Chen, Meili, Fang, Shuangsang, Zhang, Lili, Guo, Jincheng, Niu, Yiwei, Wu, Yang, Li, Hui, Zhao, Lianhe, Li, Xiyuan, Teng, Xueyi, Sun, Xianhui, Sun, Liang, Zhao, Yi, Wang, Jiajia, Zhang, Peng, Li, Yanyan, Zheng, Yu, Chen, Xiaomin, Xue, Hua, Teng, Yiheng, Kang, Quan, Hao, Yajing, Cao, Jiabao, Liu, Lin, Li, Zhao, Li, Qianpeng, Du, Qiang, Abbasi, Amir A, Shireen, Huma, Pervaiz, Nashaiman, Batool, Fatima, Raza, Rabail Z, Ma, Lina, Niu, Guangyi, Zhang, Yuansheng, Zhu, Tongtong, Hao, Lili, Wang, Guoliang, Yan, Jun, Li, Chen, Wang, Zhennan, Wang, Xiangfeng, Li, Zhonghai, Zhang, Yang, Wang, Houling, Zhang, Yi, Xia, Xinli, Guo, Hongwei, Zhu, Junwen, Zhou, Qing, Kang, Hongen, Lan, Li, Zhang, Xin, Xue, Yongbiao, Sun, Yubin, Zhai, Shuang, Yu, Lei, Sun, Mingyuan, Chen, Huanxin, Hu, Hui, Guo, AnYuan, Lin, Shaofeng, Xue, Yu, Wang, Chenwei, Ning, Wanshan, Zhang, Xinxin, Xiao, Yun, Li, Xia, Tu, Yiran, Wu, Wanying, Ji, Peifeng, Zhao, Fangqing, Luo, Hao, Gao, Feng, Guo, Yaping, Yuan, Hao, Zhang, Yong E, Zhang, Qiong, Zhou, Jiaqi, Huang, Zhou, Cui, Qinghua, Miao, YaRu, Ruan, Chen, Yuan, Chunhui, Chen, Ming, Jin, JinPu, Tian, Feng, Gao, Ge, Shi, Ying, Yao, Lan, Li, Xiangshang, Li, ChuanYun, Tang, Qing, Peng, Di. Database Resources of the National Genomics Data Center in 2020. NUCLEIC ACIDS RESEARCH[J]. 2020, 第 2 作者  通讯作者  48(D1): D24-D33, https://www.webofscience.com/wos/woscc/full-record/WOS:000525956700004.
[25] Song, Shuhui, Ma, Lina, Zou, Dong, Tian, Dongmei, Li, Cuiping, Zhu, Junwei, Chen, Meili, Wang, Anke, Ma, Yingke, Li, Mengwei, Teng, Xufei, Cui, Ying, Duan, Guangya, Zhang, Mochen, Jin, Tong, Shi, Chengmin, Du, Zhenglin, Zhang, Yadong, Liu, Chuandong, Li, Rujiao, Zeng, Jingyao, Hao, Lili, Jiang, Shuai, Chen, Hua, Han, Dali, Xiao, Jingfa, Zhang, Zhang, Zhao, Wenming, Xue, Yongbiao, Bao, Yiming. The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR. GENOMICS PROTEOMICS & BIOINFORMATICS[J]. 2020, 第 28 作者  通讯作者  18(6): 749-759, http://dx.doi.org/10.1016/j.gpb.2020.09.001.
[26] Zhao, Yongbing, Wang, Jinyue, Liang, Fang, Liu, Yanxia, Wang, Qi, Zhang, Hao, Jiang, Meiye, Zhang, Zhewen, Zhao, Wenming, Bao, Yiming, Zhang, Zhang, Wu, Jiayan, Asmann, Yan W, Li, Rujiao, Xiao, Jingfa. NucMap: a database of genome-wide nucleosome positioning map across species. NUCLEIC ACIDS RESEARCH[J]. 2019, 第 9 作者47(D1): D163-D169, 
[27] Tang, Bixia, Zhou, Qing, Dong, Lili, Li, Wulue, Zhang, Xiangquan, Lan, Li, Zhai, Shuang, Xiao, Jingfa, Zhang, Zhang, Bao, Yiming, Zhang, YaPing, Wang, GuoDong, Zhao, Wenming. iDog: an integrated resource for domestic dogs and wild canids. NUCLEIC ACIDS RESEARCH[J]. 2019, 第 13 作者  通讯作者  47(D1): D793-D800, http://dx.doi.org/10.1093/nar/gky1041.
[28] Dalang Yu, Lili Dong, Fangqi Yan, Hailong Mu, Bixia Tang, Xiao Yang, Tao Zeng, Qing Zhou, Feng Gao, Zhonghuang Wang, Ziqian Hao, Hongen Kang, Yi Zheng, Hongwei Huang, Yuzhang Wei, Wei Pan, Yaochen Xu, Junwei Zhu, Shilei Zhao, Ciran Wang, Pengyu Wang, Long Dai, Mushan Li, Li Lan, Yiwei Wang, Hua Chen, YiXue Li, YunXin Fu, Zhen Shao, Yiming Bao, Fangqing Zhao, LuoNan Chen, GuoQing Zhang, Wenming Zhao, Haipeng Li. eGPS 1.0:comprehensive software for multi-omic and evolutionary analyses. 国家科学评论:英文版[J]. 2019, 第 34 作者6(5): 867-869, http://lib.cqvip.com/Qikan/Article/Detail?id=7101064935.
[29] Zhao Wenming. Database Resources of the BIG Data Center in 2018.. Nucleic Acids Res. 2019, 第 1 作者  通讯作者  
[30] Zhang, Zhang, Zhao, Wenming, Xiao, Jingfa, Bao, Yiming, Wang, Fan, Hao, Lili, Zhu, Junwei, Chen, Tingting, Zhang, Sisi, Chen, Xu, Tang, Bixia, Zhou, Qing, Wang, Zhonghuang, Dong, Lili, Wang, Yanqing, Ma, Yingke, Zhang, Zhewen, Wang, Zhonghuang, Chen, Meili, Tian, Dongmei, Li, Cuiping, Teng, Xufei, Du, Zhenglin, Yuan, Na, Zeng, Jingyao, Wang, Jinyue, Shi, Shuo, Zhang, Yadong, Wang, Qi, Pan, Mengyu, Qian, Qiheng, Song, Shuhui, Niu, Guangyi, Li, Man, Xia, Lin, Zou, Dong, Zhang, Yuansheng, Sang, Jian, Li, Mengwei, Zhang, Yang, Wang, Pei, Gao, Qianwen, Liang, Fang, Li, Rujiao, Liu, Lin, Cao, Jiabao, abbasi, Amir A, Shireen, Huma, Li, Zhao, Xiong, Zhuang, Jiang, Meiye, Guo, Tongkun, Li, Zhaohua, Zhang, Hao, Ma, Lina, Gao, Ran, Zhang, Tao, Li, Wulue, Zhang, Xiangquan, Lan, Li, Zhai, Shuang, Zhang, Yaping, Wang, Guodong, Wang, Zhennan, Xue, Yongbiao, Sun, Yubin, Yu, Lei, Sun, Mingyuan, Chen, Huanxin, Hu, Hui, Guo, AnYuan, Lin, Shaofeng, Xue, Yu, Wang, Chenwei, Ning, Wanshan, Zhang, Ying, Luo, Hao, Gao, Feng, Guo, Yaping, Zhang, Qiong, Zhou, Jiaqi, Huang, Zhou, Cui, Qinghua, Miao, YaRu, Ruan, Chen, Yuan, Chunhui, Chen, Ming, Jinpu, Jin, Gao, Ge, Xu, Haodong, Li, Yumei, Li, ChuanYun, Tang, Qing, Peng, Di, Deng, Wankun, Big Data Ctr Members. Database Resources of the BIG Data Center in 2019. NUCLEIC ACIDS RESEARCH[J]. 2019, 第 2 作者  通讯作者  47(D1): D8-D14, http://dx.doi.org/10.1093/nar/gky993.
[31] Sang, Jian, Wang, Zhennan, Li, Man, Cao, Jiabao, Niu, Guangyi, Xia, Lin, Zou, Dong, Wang, Fan, Xu, Xingjian, Han, Xiaojiao, Fan, Jinqi, Yang, Ye, Zuo, Wanzhu, Zhang, Yang, Zhao, Wenming, Bao, Yiming, Xiao, Jingfa, Hu, Songnian, Hao, Lili, Zhang, Zhang. ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization. NUCLEIC ACIDS RESEARCH[J]. 2018, 第 15 作者46(D1): D121-D126, https://www.webofscience.com/wos/woscc/full-record/WOS:000419550700019.
[32] Zhao Wenming. Database Resources of the BIG Data Center in 2017. Nucleic Acids Res. 2018, 第 1 作者  通讯作者  
[33] Li, Rujiao, Liang, Fang, Li, Mengwei, Zou, Dong, Sun, Shixiang, Zhao, Yongbing, Zhao, Wenming, Bao, Yiming, Xiao, Jingfa, Zhang, Zhang. MethBank 3.0: a database of DNA methylomes across a variety of species. NUCLEIC ACIDS RESEARCH[J]. 2018, 第 7 作者46(D1): D288-D295, https://www.webofscience.com/wos/woscc/full-record/WOS:000419550700044.
[34] GuoDong Wang, XiuJuan Shao, Bing Bai, Junlong Wang, Xiaobo Wang, Xue Cao, YanHu Liu, Xuan Wang, TingTing Yin, ShaoJie Zhang, Yan Lu, Zechong Wang, Lu Wang, Wenming Zhao, Bing Zhang, Jue Ruan, YaPing Zhang. Structural variation during dog domestication: insights from gray wolf and dhole genomes. NATIONAL SCIENCE REVIEW. 2018, 第 14 作者6(1): 110-122, 
[35] Tang, Bixia, Li, Feifei, Li, Jing, Zhao, Wenming, Zhang, Zhihua. Delta: a new web-based 3D genome visualization and analysis platform. BIOINFORMATICS[J]. 2018, 第 4 作者  通讯作者  34(8): 1409-1410, https://www.webofscience.com/wos/woscc/full-record/WOS:000430175000021.
[36] Song, Shuhui, Tian, Dongmei, Li, Cuiping, Tang, Bixia, Dong, Lili, Xiao, Jingfa, Bao, Yiming, Zhao, Wenming, He, Hang, Zhang, Zhang. Genome Variation Map: a data repository of genome variations in BIG Data Center. NUCLEIC ACIDS RESEARCH[J]. 2018, 第 8 作者46(D1): D944-D949, http://dx.doi.org/10.1093/nar/gkx986.
[37] Xu, Xingjian, Hao, Lili, Zhu, Junwei, Zhou, Qing, Song, Fuhai, Chen, Tingting, Zhang, Sisi, Dong, Lili, Lan, Li, Wang, Yanqing, Liang, Fang, Cao, Jiabao, Liu, Fang, Liu, Lin, Wang, Fan, Ma, Yingke, Zhang, Lijuan, Chen, Meili, Tian, Dongmei, Li, Cuiping, Du, Zhenglin, Yuan, Na, Zeng, Jingyao, Zhang, Zhewen, Wang, Jinyue, Shi, Shuo, Zhang, Yadong, Pan, Mengyu, Tang, Bixia, Zou, Dong, Song, Shuhui, Sang, Jian, Xia, Lin, Wang, Zhennan, Li, Man, Niu, Guangyi, Zhang, Yang, Sheng, Xin, Lu, Mingming, Wang, Qi, Liang, Fang, Li, Mengwei, Sun, Shixiang, Li, Rujiao, Yu, Chunlei, Wang, Guangyu, Li, Man, Yin, Hongyan, Ma, Lina, Chen, Huanxin, Sun, Yubin, Yu, Lei, Zhai, Shuang, Sun, Mingyuan, Zhang, Zhang, Zhao, Wenming, Xiao, Jingfa, Bao, Yiming, Song, Shuhui, Miao, YaRu, Guo, AnYuan, Lin, Shaofeng, Xue, Yu, Luo, Hao, Gao, Feng, Ma, Wei, Cui, Qinghua, Xu, Haodong, BIG Data Ctr, BioCode Team, BioProject BioSample GSA Team, GWH Team, GVM Team, GEN Team, MethBank Team, Science Wikis Team, Hardware System Administration, Writing Grp, AnimalTFDB lncRNASNP Team, dbPAF Team, DEG DoriC Team, LncRNADis Team, PLMD Team. Database Resources of the BIG Data Center in 2018. NUCLEIC ACIDS RESEARCH[J]. 2018, 第 56 作者  通讯作者  46(D1): D14-D20, http://dx.doi.org/10.1093/nar/gkx897.
[38] 张思思, 陈婷婷, 朱军伟, 周晴, 陈旭, 王彦青, 赵文明. GSA:组学原始数据归档库. 遗传[J]. 2018, 第 7 作者40(11): 1044-1047, http://lib.cqvip.com/Qikan/Article/Detail?id=7000931365.
[39] Zhang, Zhang, Zhao, Wenming, Xiao, Jingfa, Song, Shuhui, Hao, Lili, Li, Rujiao, Ma, Lina, Sheng, Xin, Sang, Jian, Wang, Yanqing, Tang, Bixia, Zhang, Zhewen, BIG Data Ctr Members. The BIG Data Center: from deposition to integration to translation. NUCLEIC ACIDS RESEARCH[J]. 2017, 第 2 作者  通讯作者  45(D1): D18-D24, http://dx.doi.org/10.1093/nar/gkw1060.
[40] Wang, Yanqing, Song, Fuhai, Zhu, Junwei, Zhang, Sisi, Yang, Yadong, Chen, Tingting, Tang, Bixia, Dong, Lili, Ding, Nan, Zhang, Qian, Bai, Zhouxian, Dong, Xunong, Chen, Huanxin, Sun, Mingyuan, Zhai, Shuang, Sun, Yubin, Yu, Lei, Lan, Li, Xiao, Jingfa, Fang, Xiangdong, Lei, Hongxing, Zhang, Zhang, Zhao, Wenming. GSA: Genome Sequence Archive. GENOMICS PROTEOMICS & BIOINFORMATICS[J]. 2017, 第 23 作者  通讯作者  15(1): 14-18, http://lib.cqvip.com/Qikan/Article/Detail?id=671499521.
[41] Yanqing Wang, Fuhai Song, Junwei Zhu, Sisi Zhang, Yadong Yang, Tingting Chen, Bixia Tang, Lili Dong, Nan Ding, Qian Zhang, Zhouxian Bai, Xunong Dong, Huanxin Chen, Mingyuan Sun, Shuang Zhai, Yubin Sun, Lei Yu, Li Lan, Jingfa Xiao, Xiangdong Fang, Hongxing Lei, Zhang Zhang, Wenming Zhao. GSA: Genome Sequence Archive. 基因组蛋白质组与生物信息学报:英文版[J]. 2017, 第 23 作者15(1): 14-18, http://lib.cqvip.com/Qikan/Article/Detail?id=671499521.
[42] []. Correction for Ling et al., Extremely high genetic diversity in a single tumor points to prevalence of non-Darwinian cell evolution. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2016, 113(5): E663-E663, 
[43] Luo, Hong, Zhao, Wenming, Wang, Yanqing, Xia, Yan, Wu, Xiaoyuan, Zhang, Limin, Tang, Bixia, Zhu, Junwei, Fang, Lu, Du, Zhenglin, Bekele, Wubishet A, Tai, Shuaishuai, Jordan, David R, Godwin, Ian D, Snowdon, Rod J, Mace, Emma S, Jing, HaiChun, Luo, Jingchu. SorGSD: a sorghum genome SNP database. BIOTECHNOLOGY FOR BIOFUELS[J]. 2016, 第 2 作者9: http://ir.ibcas.ac.cn/handle/2S10CLM1/15401.
[44] Zhang, Zhang, Hu, Songnian, He, Hang, Zhang, Huiyong, Chen, Fei, Zhao, Wenming, Xiao, Jingfa, Chen, LingLing, Xue, Yu, Wang, Xiangfeng, Xia, Lin, Wang, Xin, Luo, Yingfeng, He, Zilong, Wu, Shuangyang, Hao, Lili, Zou, Dong, Yang, Li, Huang, Dawei, Xu, Xingjian, Yan, Wei, Li, Qian, Zhong, Jun, Zou, Dong, Xu, Xingjian, Yuan, Fangfang, Zhang, Ye, Sang, Jian, Ma, Lina, Liu, Siqi, Zou, Dong, Cheng, Han, Wang, Yongbo, Deng, Wankun, Ji, Zhaohua, IC4R Project Consortium. Information Commons for Rice (IC4R). NUCLEIC ACIDS RESEARCH[J]. 2016, 第 6 作者44(D1): D1172-D1180, https://www.webofscience.com/wos/woscc/full-record/WOS:000371261700166.
[45] 赵文明. 面向国际的生命组学大数据管理体系建设. BIG Data Research. 2016, 第 1 作者
[46] Luo, Hong, Zhao, Wenming, Wang, Yanqing, Xia, Yan, Wu, Xiaoyuan, Zhang, Limin, Tang, Bixia, Zhu, Junwei, Fang, Lu, Du, Zhenglin, Bekele, Wubishet A, Tai, Shuaishuai, Jordan, David R, Godwin, Ian D, Snowdon, Rod J, Mace, Emma S, Luo, Jingchu, Jing, HaiChun. SorGSD: a sorghum genome SNP database (vol 9, 6, 2016). BIOTECHNOLOGY FOR BIOFUELS. 2016, 第 2 作者9: https://www.webofscience.com/wos/woscc/full-record/WOS:000460481700001.
[47] Bai, Bing, Zhao, WenMing, Tang, BiXia, Wang, YanQing, Wang, Lu, Zhang, Zhang, Yang, HeChuan, Liu, YanHu, Zhu, JunWei, Irwin, David M, Wang, GuoDong, Zhang, YaPing. DoGSD: the dog and wolf genome SNP database. NUCLEIC ACIDS RESEARCH[J]. 2015, 第 2 作者43(D1): D777-D783, http://dx.doi.org/10.1093/nar/gku1174.
[48] Tang, Bixia, Wang, Yanqing, Zhu, Junwei, Zhao, Wenming. Web Resources for Model Organism Studies. GENOMICS PROTEOMICS & BIOINFORMATICS[J]. 2015, 第 4 作者  通讯作者  13(1): 64-68, http://lib.cqvip.com/Qikan/Article/Detail?id=664451422.
[49] Bixia Tang, Yanqing Wang, Junwei Zhu, Wenming Zhao. Web Resources for Model Organism Studies. 基因组蛋白质组与生物信息学报:英文版[J]. 2015, 第 4 作者13(1): 64-68, http://lib.cqvip.com/Qikan/Article/Detail?id=664451422.
[50] Ding, Jun, Zhao, Le, Chang, Yaqing, Zhao, Wenming, Du, Zhenlin, Hao, Zhenlin. Transcriptome Sequencing and Characterization of Japanese Scallop Patinopecten yessoensis from Different Shell Color Lines. PLOS ONE[J]. 2015, 第 4 作者10(2): http://dx.doi.org/10.1371/journal.pone.0116406.
[51] Li, Boqiang, Zong, Yuanyuan, Du, Zhenglin, Chen, Yong, Zhang, Zhanquan, Qin, Guozheng, Zhao, Wenming, Tian, Shiping. Genomic Characterization Reveals Insights Into Patulin Biosynthesis and Pathogenicity in Penicillium Species. MOLECULAR PLANT-MICROBE INTERACTIONS[J]. 2015, 第 7 作者28(6): 635-647, http://ir.ibcas.ac.cn/handle/2S10CLM1/12387.
[52] Liang, Fang, Tang, Bixia, Wang, Yanqing, Wang, Jianfeng, Yu, Caixia, Chen, Xu, Zhu, Junwei, Yan, Jiangwei, Zhao, Wenming, Li, Rujiao. WBSA: Web Service for Bisulfite Sequencing Data Analysis. PLOS ONE[J]. 2014, 第 9 作者  通讯作者  9(1): https://doaj.org/article/b1d7e27399294408af67d57351829219.
[53] Di, Ran, He, Jianning, Song, Shuhui, Tian, Dongmei, Liu, Qiuyue, Liang, Xiaojun, Ma, Qing, Sun, Min, Wang, Jiandong, Zhao, Wenming, Cao, Guiling, Wang, Jinxin, Yang, Zhimin, Ge, Ying, Chu, Mingxing. Characterization and comparative profiling of ovarian microRNAs during ovine anestrus and the breeding season. BMC GENOMICS[J]. 2014, 第 10 作者15(1): http://dx.doi.org/10.1186/1471-2164-15-899.
[54] Ying Ge, Mingxing Chu, Zhimin Yang, Min Sun, Qiuyue Liu, Dongmei Tian, Jiandong Wang, Wenming Zhao, Qing Ma, Jianning He, Ran Di, Jinxin Wang, Xiaojun Liang, Shuhui Song, Guiling Cao. Characterization and comparative profiling of ovarian microRNAs during ovine anestrus and the breeding season. BMC GENOMICS,15,1(2014-10-15). 2014, 第 8 作者
[55] Wang, Guodong, Zhai, Weiwei, Yang, Hechuan, Fan, Ruoxi, Cao, Xue, Zhong, Li, Wang, Lu, Liu, Fei, Wu, Hong, Cheng, Luguang, Poyarkov, Andrei D, Poyarkov, Nikolai A, Jr, Tang, Shusheng, Zhao, Wenming, Gao, Yun, Lv, Xuemei, Irwin, David M, Savolainen, Peter, Wu, ChungI, Zhang, Yaping. The genomics of selection in dogs and the parallel evolution between dogs and humans. NATURE COMMUNICATIONS[J]. 2013, 第 14 作者4(X): http://dx.doi.org/10.1038/ncomms2814.
[56] Zheng, GuanQun, Dahl, John Arne, Niu, YaMei, Fedorcsak, Peter, Huang, ChunMin, Li, Charles J, Vagbo, Cathrine B, Shi, Yue, Wang, WenLing, Song, ShuHui, Lu, ZhiKe, Bosmans, Ralph P G, Dai, Qing, Hao, YaJuan, Yang, Xin, Zhao, WenMing, Tong, WeiMin, Wang, XiuJie, Bogdan, Florian, Furu, Kari, Fu, Ye, Jia, Guifang, Zhao, Xu, Liu, Jun, Krokan, Hans E, Klungland, Arne, Yang, YunGui, He, Chuan. ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility. MOLECULAR CELL[J]. 2013, 第 16 作者49(1): 18-29, http://dx.doi.org/10.1016/j.molcel.2012.10.015.
[57] Tao, Yong, Ruan, Jue, Yeh, ShiouHwei, Lu, Xuemei, Wang, Yu, Zhai, Weiwei, Cai, Jun, Ling, Shaoping, Gong, Qiang, Chong, Zecheng, Qu, Zhengzhong, Li, Qianqian, Liu, Jiang, Yang, Jin, Zheng, Caihong, Zeng, Changqing, Wang, HurngYi, Zhang, Jing, Wang, ShengHan, Hao, Lingtong, Dong, Lili, Li, Wenjie, Sun, Min, Zou, Wei, Yu, Caixia, Li, Chaohua, Liu, Guojing, Jiang, Lan, Xu, Jin, Huang, Huanwei, Li, Chunyan, Mi, Shuangli, Zhang, Bing, Chen, Baoxian, Zhao, Wenming, Hu, Songnian, Zhuang, ShiMei, Shen, Yang, Shi, Suhua, Brown, Christopher, White, Kevin P, Chen, DingShinn, Chen, PeiJer, Wu, ChungI. Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2011, 第 35 作者108(29): 12042-12047, http://dx.doi.org/10.1073/pnas.1108715108.
[58] Zhou, Renchao, Ling, Shaoping, Zhao, Wenming, Osada, Naoki, Chen, Sufang, Zhang, Meng, He, Ziwen, Bao, Hua, Zhong, Cairong, Zhang, Bing, Lu, Xuemei, Turissini, David, Duke, Norman C, Lu, Jian, Shi, Suhua, Wu, ChungI. Population Genetics in Nonmodel Organisms: II. Natural Selection in Marginal Habitats Revealed by Deep Sequencing on Dual Platforms. MOLECULAR BIOLOGY AND EVOLUTION[J]. 2011, 第 3 作者28(10): 2833-2842, https://www.webofscience.com/wos/woscc/full-record/WOS:000295184200012.
[59] Zhao, Wenming, Liu, Wanfei, Tian, Dongmei, Tang, Bixia, Wang, Yanqing, Yu, Caixia, Li, Rujiao, Ling, Yunchao, Wu, Jiayan, Song, Shuhui, Hu, Songnian. wapRNA: a web-based application for the processing of RNA sequences. BIOINFORMATICS[J]. 2011, 第 1 作者27(21): 3076-3077, http://dx.doi.org/10.1093/bioinformatics/btr504.
[60] Zhou, Renchao, Ling, Shaoping, Zhao, Wenming, Osada, Naoki, Chen, Sufang, Zhang, Meng, He, Ziwen, Bao, Hua, Zhong, Cairong, Zhang, Bing, Lu, Xuemei, Turissini, David, Duke, Norman C, Lu, Jian, Shi, Suhua, Wu, ChungI. Population Genetics in Nonmodel Organisms: II. Natural Selection in Marginal Habitats Revealed by Deep Sequencing on Dual Platforms. MOLECULAR BIOLOGY AND EVOLUTION[J]. 2011, 第 3 作者28(10): 2833-2842, https://www.webofscience.com/wos/woscc/full-record/WOS:000295184200012.
[61] Zhao, WM, Wang, J, He, XM, Huang, XB, Jiao, YZ, Dai, MT, Wei, SL, Fu, J, Chen, Y, Ren, XY, Zhang, Y, Ni, PX, Zhang, JG, Lil, SG, Wang, J, Wong, GKS, Zhao, HY, Yu, J, Yang, HM, Wang, J. BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics. NUCLEIC ACIDS RESEARCH[J]. 2004, 32(Database issue): D377-D382, https://www.webofscience.com/wos/woscc/full-record/WOS:000188079000090.
[62] Wong, GKS, Liu, B, Wang, J, Zhang, Y, Yang, X, Zhang, ZJ, Meng, QS, Zhou, J, Li, DW, Zhang, JJ, Ni, PX, Li, SG, Ran, LH, Li, H, Zhang, JG, Li, RQ, Li, ST, Zheng, HK, Lin, W, Li, GY, Wang, XL, Zhao, WM, Li, J, Ye, C, Dai, MT, Ruan, J, Zhou, Y, Li, YZ, He, XM, Zhang, YZ, Wang, J, Huang, XG, Tong, W, Chen, J, Ye, J, Chen, C, Wei, N, Li, GQ, Dong, L, Lan, FD, Sun, YQ, Zhang, ZP, Yang, Z, Yu, YP, Huang, YQ, He, DD, Xi, Y, Wei, D, Qi, QH, Li, WJ, Shi, JP, Wang, MH, Xie, F, Wang, JJ, Zhang, XW, Wang, P, Zhao, YQ, Li, N, Yang, N, Dong, W, Hu, SN, Zeng, CQ, Zheng, WM, Hao, BL, Hillier, LW, Yang, SP, Warren, WC, Wilson, RK, Brandstrom, M, Ellegren, H, Crooijmans, RPMA, van der Poel, JJ, Bovenhuis, H, Groenen, MAM, Ovcharenko, I, Gordon, L, Stubbs, L, Lucas, S, Glavina, T, Aerts, A, Kaiser, P, Rothwell, L, Young, JR, Rogers, S, Walker, BA, van Hateren, A, Kaufman, J, Bumstead, N, Lamont, SJ, Zhou, HJ, Hocking, PM, Morrice, D, de Koning, DJ, Law, A, Bartley, N, Burt, DW, Hunt, H, Cheng, HH, Gunnarsson, U, Wahlberg, P, Andersson, L, Kindlund, E, Tammi, MT, Andersson, B, Webber, C, Ponting, CP, Overton, IM, Boardman, PE, Tang, HZ, Hubbard, SJ, Wilson, SA, Yu, J, Wang, J, Yang, HM, Int Chicken Polymorphism Map Conso. A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. NATURE[J]. 2004, 432(7018): 717-722, https://www.webofscience.com/wos/woscc/full-record/WOS:000225597200039.

指导学生

已指导学生

周晴  硕士研究生  085211-计算机技术  

王钟凰  硕士研究生  085211-计算机技术  

康海龙  硕士研究生  085238-生物工程  

张亚东  博士研究生  0710J3-生物信息学  

现指导学生

金恩慧  硕士研究生  0710Z1-基因组学  

吴港澳  硕士研究生  0710Z1-基因组学  

黄天昊  硕士研究生  0710J3-生物信息学  

王钟凰  博士研究生  0710J3-生物信息学  

陈潇宁  硕士研究生  0710J3-生物信息学  

王钇博  硕士研究生  0710J3-生物信息学  

康海龙  博士研究生  0710J3-生物信息学  

段光亚  博士研究生  0710J3-生物信息学  

林毅豪  硕士研究生  0710J3-生物信息学  

孙佳尼  硕士研究生  0710J3-生物信息学