070105-运筹学与控制论
1201Z1-管理运筹学
081203-计算机应用技术

运筹学及其应用
优化与决策
数据挖掘与生物信息学

1997-09--2002-07   中国科学院数学与系统科学研究院   博士
1993-09--1997-07   武汉大学数学系   本科

   

2015-03~现在, 中国科学院数学与系统科学研究院, 研究员
2007-04~2015-03,中国科学院数学与系统科学研究院, 副研究员
2005-06~2007-04,中国科学院数学与系统科学研究院, 助理研究员
2003-09~2005-06,中国科学院数学与系统科学研究院, 博士后
2002-08~2003-08,香港科技大学工业工程与工程管理系, 博士后

2020-10-18-今,中国运筹学会, 组织工作委员会副主任
2020-10-18-今,中国运筹学会, 常务副秘书长
2019-01-10-今,中国工业与应用数学学会, 副秘书长
2016-10-16-今,中国运筹学会, 常务理事
2016-10-15-2020-10-18,中国运筹学会, 青年工作委员会副主任
2012-10-18-今,中国运筹学会, 理事
2012-10-17-2020-10-18,中国运筹学会, 科普工作委员会副主任
2011-08-31-2020-09-19,中国运筹学会计算系统生物学分会, 副理事长
2010-10-01-今,运筹与管理, 编委

随机算法
本科生毕业设计（数学与应用数学）
生物信息学与计算系统生物学
生物信息学与系统生物学

   

[1] Briefings in Bioinformatics. 2024,   通讯作者  
[2] Yu, Jiating, Leng, Jiacheng, Yuan, Fan, Sun, Duanchen, Wu, LingYun. Reverse network diffusion to remove indirect noise for better inference of gene regulatory networks. BIOINFORMATICS[J]. 2024, 第 5 作者  通讯作者  40(7): http://dx.doi.org/10.1093/bioinformatics/btae435.
[3] 李珍萍, 施莹, 吴凌云. 多约束混流线平衡与排序优化问题研究. 系统仿真学报[J]. 2023, 第 3 作者35(01期): 27-40, VIP_JournalArticle.
[4] 侯智超, 冷嘉承, 于嘉汀, Zheng Xia, 吴凌云. PathExpSurv: pathway expansion for explainable survival analysis and disease gene discovery. BMC Bioinformatics[J]. 2023, 第 5 作者  通讯作者  
[5] Jiating Yu, Jiacheng Leng, Duanchen Sun, LingYun Wu. Network Refinement: Denoising complex networks for better community detection. PHYSICA A: STATISTICAL MECHANICS AND ITS APPLICATIONS[J]. 2023, 第 4 作者  通讯作者  617: http://dx.doi.org/10.1016/j.physa.2023.128681.
[6] Ren, Tao, Chen, Canping, Danilov, Alexey V, Liu, Susan, Guan, Xiangnan, Du, Shunyi, Wu, Xiwei, Sherman, Mara H, Spellman, Paul T, Coussens, Lisa M, Adey, Andrew C, Mills, Gordon B, Wu, LingYun, Xia, Zheng. Supervised learning of high-confidence phenotypic subpopulations from single-cell data (vol 5, pg 528, 2023). NATURE MACHINE INTELLIGENCE[J]. 2023, 第 13 作者  通讯作者  5(6): 676-676, http://dx.doi.org/10.1038/s42256-023-00681-x.
[7] Leng, Jiacheng, Wu, LingYun. Importance-Penalized Joint Graphical Lasso (IPJGL): differential network inference via GGMs. BIOINFORMATICS[J]. 2022, 第 2 作者  通讯作者  38(3): 770-777, http://dx.doi.org/10.1093/bioinformatics/btab751.
[8] 于嘉汀, 吴凌云. Multiple Order Local Information model for link prediction in complex networks. PHYSICAASTATISTICALMECHANICSANDITSAPPLICATIONS[J]. 2022, 第 2 作者  通讯作者  600: 
[9] Wang, Xu, Wu, LingYun. Operations Research in the Blockchain Technology. JOURNAL OF THE OPERATIONS RESEARCH SOCIETY OF CHINA[J]. 2022, 第 2 作者  通讯作者  10: 401-422, 
[10] 李珍萍, 贾顺顺, 卜晓奇, 吴凌云, 张国维. 无人仓系统储位分配问题的优化模型与算法. 中国管理科学[J]. 2022, 第 4 作者  通讯作者  30(1): 124-135, http://lib.cqvip.com/Qikan/Article/Detail?id=7106740087.
[11] Leng, Jiacheng, Wu, LingYun. Interaction-based transcriptome analysis via differential network inference. BRIEFINGS IN BIOINFORMATICS[J]. 2022, 第 2 作者  通讯作者  23(6): http://dx.doi.org/10.1093/bib/bbac466.
[12] Sun, Duanchen, Guan, Xiangnan, Moran, Amy E, Wu, LingYun, Qian, David Z, Schedin, Pepper, Dai, MuShui, Danilov, Alexey, V, Alumkal, Joshi J, Adey, Andrew C, Spellman, Paul T, Xia, Zheng. Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data. NATURE BIOTECHNOLOGY[J]. 2022, 第 4 作者40(4): 527-+, http://dx.doi.org/10.1038/s41587-021-01091-3.
[13] 张国维, 吴凌云. 考虑商品数量和商品拣选成本的AGV智能仓库订单分批问题研究. 运筹与管理[J]. 2022, 第 2 作者31(12): 9-15, http://lib.cqvip.com/Qikan/Article/Detail?id=7108802435.
[14] 吴凌云. 考虑商品数量和商品拣选成本的AGV智能仓库订单分批问题研究. 运筹与管理. 2021, 第 1 作者  通讯作者  
[15] Gao, Bo, Zhao, Yue, Gao, Yonghang, Li, Guojun, Wu, LingYun. Identification of Common Driver Gene Modules and Associations between Cancers through Integrated Network Analysis. GLOBAL CHALLENGES[J]. 2021, 第 5 作者  通讯作者  5(9): https://doaj.org/article/a9d6156106dc46a78bbf5241aead2fc5.
[16] 李珍萍, 田宇璇, 卜晓奇, 吴凌云. 无人仓系统订单分批问题及K-max聚类算法. 计算机集成制造系统[J]. 2021, 第 4 作者27(5): 1506-1517, http://lib.cqvip.com/Qikan/Article/Detail?id=7104713719.
[17] 李珍萍, 范欣然, 吴凌云. 基于“货到人”拣选模式的储位分配问题研究. 运筹与管理[J]. 2020, 第 3 作者29(2): 1-11, http://lib.cqvip.com/Qikan/Article/Detail?id=7101276861.
[18] 李珍萍, 付红叶, 卜晓奇, 张国维, 吴凌云. 基于AGV的智能仓库系统订单分批问题研究. 运筹与管理[J]. 2020, 第 5 作者29(9): 1-9, http://lib.cqvip.com/Qikan/Article/Detail?id=7102928496.
[19] Wang, Xu, Gan, Guohua, Wu, LingYun. Framework and algorithms for identifying honest blocks in blockchain. PLOS ONE[J]. 2020, 第 3 作者  通讯作者  15(1): https://doaj.org/article/d0ba4d1951db4c10bd806d6c2c747925.
[20] 王旭, 甘国华, 吴凌云. 区块链性能的量化分析研究. 计算机工程与应用[J]. 2020, 第 3 作者56(3): 55-60, http://lib.cqvip.com/Qikan/Article/Detail?id=7100842119.
[21] 冷嘉承, 吴凌云. 基于机器学习的RNA编辑位点预测方法综述. 生物信息学[J]. 2019, 第 2 作者17(1): 1-8, http://lib.cqvip.com/Qikan/Article/Detail?id=7001395613.
[22] 李珍萍, 陈星艺, 卜晓奇, 吴凌云. 基于AGV的智能仓库系统储位分配问题研究. 数学的实践与认识[J]. 2019, 第 4 作者296-305, http://lib.cqvip.com/Qikan/Article/Detail?id=83837483504849574954485151.
[23] Sun, Duanchen, Ren, Xianwen, Ari, Eszter, Korcsmaros, Tamas, Csermely, Peter, Wu, LingYun. Discovering cooperative biomarkers for heterogeneous complex disease diagnoses. BRIEFINGS IN BIOINFORMATICS[J]. 2019, 第 6 作者  通讯作者  20(1): 89-101, http://dx.doi.org/10.1093/bib/bbx090.
[24] Sun, Duanchen, Liu, Yinliang, Zhang, XiangSun, Wu, LingYun. CEA: Combination-based gene set functional enrichment analysis. SCIENTIFIC REPORTS[J]. 2018, 第 4 作者  通讯作者  8(1): https://doaj.org/article/b29ee997d8fb405b96744d0d5603f13e.
[25] 李珍萍, 胡娩霞, 吴凌云. 基于遗传算法的成品油二次配送车辆路径问题研究. 数学的实践与认识. 2018, 第 3 作者48(9): 189-198, https://d.wanfangdata.com.cn/periodical/sxdsjyrs201809020.
[26] Xu, Yan, Li, Li, Ding, Jun, Wu, LingYun, Mai, Guoqin, Zhou, Fengfeng. Gly-PseAAC: Identifying protein lysine glycation through sequences. GENE[J]. 2017, 第 4 作者602: 1-7, http://dx.doi.org/10.1016/j.gene.2016.11.021.
[27] Liu, ZhiPing, Liu, Shutang, Chen, Ruitang, Huang, Xiaopeng, Wu, LingYun. Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces. BMC BIOINFORMATICS[J]. 2017, 第 5 作者  通讯作者  18(1): http://dx.doi.org/10.1186/s12859-016-1410-1.
[28] Sun, Duanchen, Liu, Yinliang, Zhang, XiangSun, Wu, LingYun. NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis. BMC SYSTEMS BIOLOGY[J]. 2017, 第 4 作者  通讯作者  11(Suppl 4): http://dx.doi.org/10.1186/s12918-017-0456-7.
[29] Xu, Yan, Ding, YaXin, Ding, Jun, Wu, LingYun, Xue, Yu. Mal-Lys: prediction of lysine malonylation sites in proteins integrated sequence-based features with mRMR feature selection. SCIENTIFIC REPORTS[J]. 2016, 第 4 作者6: http://dx.doi.org/10.1038/srep38318.
[30] Xu, Yan, Ding, Jun, Wu, LingYun. iSulf-Cys: Prediction of S-sulfenylation Sites in Proteins with Physicochemical Properties of Amino Acids. PLOS ONE[J]. 2016, 第 3 作者11(4): http://dx.doi.org/10.1371/journal.pone.0154237.
[31] Xu, Yan, Ding, YaXin, Ding, Jun, Lei, YaHui, Wu, LingYun, Deng, NaiYang. iSuc-PseAAC: predicting lysine succinylation in proteins by incorporating peptide position-specific propensity. SCIENTIFIC REPORTS[J]. 2015, 第 5 作者5: http://dx.doi.org/10.1038/srep10184.
[32] Ling-Yun Wu. Enrichment set cover problem. The Proceedings of 12th International Symposium on Operations Research and Its Applications. 2015, 第 1 作者  通讯作者  
[33] Xu, Yan, Ding, YaXin, Ding, Jun, Wu, LingYun, Deng, NaiYang. Phogly-PseAAC: Prediction of lysine phosphoglycerylation in proteins incorporating with position-specific propensity. JOURNAL OF THEORETICAL BIOLOGY[J]. 2015, 第 4 作者379: 10-15, http://dx.doi.org/10.1016/j.jtbi.2015.04.016.
[34] Csermely, Peter, Hodsagi, Janos, Korcsmaros, Tamas, Modos, Dezso, PerezLopez, Aron R, Szalay, Kristof, Veres, Daniel V, Lenti, Katalin, Wu, LingYun, Zhang, XiangSun. Cancer stem cells display extremely large evolvability: alternating plastic and rigid networks as a potential Mechanism Network models, novel therapeutic target strategies, and the contributions of hypoxia, inflammation and cellular senescence. SEMINARS IN CANCER BIOLOGY. 2015, 第 9 作者30: 42-51, http://dx.doi.org/10.1016/j.semcancer.2013.12.004.
[35] Zhang, Junhua, Wu, LingYun, Zhang, XiangSun, Zhang, Shihua. Discovery of co-occurring driver pathways in cancer. BMC BIOINFORMATICS[J]. 2014, 第 2 作者15(1): http://dx.doi.org/10.1186/1471-2105-15-271.
[36] Xu, Yan, Wang, Xiaobo, Wang, Yongcui, Tian, Yingjie, Shao, Xiaojian, Wu, LingYun, Deng, Naiyang. Prediction of posttranslational modification sites from amino acid sequences with kernel methods. JOURNAL OF THEORETICAL BIOLOGY[J]. 2014, 第 6 作者344: 78-87, http://dx.doi.org/10.1016/j.jtbi.2013.11.012.
[37] Xu, Yan, Wen, Xin, Wen, LiShu, Wu, LingYun, Deng, NaiYang, Chou, KuoChen. iNitro-Tyr: Prediction of Nitrotyrosine Sites in Proteins with General Pseudo Amino Acid Composition. PLOS ONE[J]. 2014, 第 4 作者9(8): https://www.webofscience.com/wos/woscc/full-record/WOS:000341017000088.
[38] Huang, Qiang, Wu, LingYun, Wang, Yong, Zhang, XiangSun. GOMA: functional enrichment analysis tool bases on GO modules. CHINESE JOURNAL OF CANCER[J]. 2013, 第 2 作者  通讯作者  32(4): 195-204, https://www.webofscience.com/wos/woscc/full-record/WOS:000339648500006.
[39] Huang Qiang, Wu Lingyun, Wang Yong, Zhang Xiangsun. gomafunctionalenrichmentanalysistoolbasedongomodules. CHINESEJOURNALOFCANCER[J]. 2013, 第 2 作者32(4): 195, http://ir.amss.ac.cn/handle/2S8OKBNM/49423, http://www.irgrid.ac.cn/handle/1471x/6869689, http://ir.amss.ac.cn/handle/2S8OKBNM/49424.
[40] Yan Xu, Jun Ding, LingYun Wu, KuoChen Chou. iSNO-PseAAC: Predict Cysteine S-Nitrosylation Sites in Proteins by Incorporating Position Specific Amino Acid Propensity into Pseudo Amino Acid Composition. PLOS ONE[J]. 2013, 第 3 作者8(2): https://doaj.org/article/5befbbfbeb4f43929192a4d1685c0f33.
[41] Xu, Yan, Shao, XiaoJian, Wu, LingYun, Deng, NaiYang, Chou, KuoChen. iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteine S-nitrosylation sites in proteins. PEERJ[J]. 2013, 第 3 作者1: https://doaj.org/article/4b790059c54c455a9619d2b5c55d5116.
[42] Huang, Qiang, Wu, LingYun, Zhang, XiangSun. Corbi: a new R package for biological network alignment and querying. BMC SYSTEMS BIOLOGY[J]. 2013, 第 2 作者  通讯作者  7(Suppl 2): S6-S6, http://dx.doi.org/10.1186/1752-0509-7-S2-S6.
[43] Ling-Yun Wu. CNetA: Network alignment by combining biological and topological features. Proceedings of the 6th IEEE International Conference on Systems Biology (ISB). 2012, 第 1 作者  通讯作者  
[44] Li, HuiJia, Wang, Yong, Wu, LingYun, Liu, ZhiPing, Chen, Luonan, Zhang, XiangSun. Community structure detection based on Potts model and network's spectral characterization. EPL[J]. 2012, 第 3 作者97(4): http://dx.doi.org/10.1209/0295-5075/97/48005.
[45] Zhao, Junfei, Zhang, Shihua, Wu, LingYun, Zhang, XiangSun. Efficient methods for identifying mutated driver pathways in cancer. BIOINFORMATICS[J]. 2012, 第 3 作者28(22): 2940-2947, https://www.webofscience.com/wos/woscc/full-record/WOS:000311303500011.
[46] Wang, Yong, Wu, QiaoFeng, Chen, Chen, Wu, LingYun, Yan, XianZhong, Yu, ShuGuang, Zhang, XiangSun, Liang, FanRong. Revealing metabolite biomarkers for acupuncture treatment by linear programming based feature selection. BMC SYSTEMS BIOLOGY[J]. 2012, 第 4 作者6(Suppl 1): S15-S15, http://dx.doi.org/10.1186/1752-0509-6-S1-S15.
[47] Li, HuiJia, Wang, Yong, Wu, LingYun, Zhang, Junhua, Zhang, XiangSun. Potts model based on a Markov process computation solves the community structure problem effectively. PHYSICAL REVIEW E[J]. 2012, 第 3 作者86(1): http://dx.doi.org/10.1103/PhysRevE.86.016109.
[48] Ling-Yun Wu. Analyzing time-course gene expression data using profile-state hidden Markov model. Proceedings of the 5th IEEE International Conference on Systems Biology (ISB). 2011, 第 1 作者  通讯作者  
[49] Huang, Qiang, Wu, LingYun, Zhang, XiangSun. An efficient network querying method based on conditional random fields. BIOINFORMATICS[J]. 2011, 第 2 作者  通讯作者  27(22): 3173-3178, https://www.webofscience.com/wos/woscc/full-record/WOS:000296637500014.
[50] Wang, Jiguang, Huang, Qiang, Liu, ZhiPing, Wang, Yong, Wu, LingYun, Chen, Luonan, Zhang, XiangSun. NOA: a novel Network Ontology Analysis method. NUCLEIC ACIDS RESEARCH[J]. 2011, 第 5 作者39(13): https://www.webofscience.com/wos/woscc/full-record/WOS:000293020000004.
[51] Ling-Yun Wu. Detecting coherent local patterns from time series gene expression data by a temporal biclustering method. Proceedings of the 5th IEEE International Conference on Systems Biology (ISB). 2011, 第 1 作者
[52] Wang, Lin, Wu, LingYun, Wang, Yong, Zhang, XiangSun, Chen, Luonan. SANA: an algorithm for sequential and non-sequential protein structure alignment. AMINO ACIDS[J]. 2010, 第 2 作者39(2): 417-425, https://www.webofscience.com/wos/woscc/full-record/WOS:000279190400011.
[53] Xu, Yan, Wang, XiaoBo, Ding, Jun, Wu, LingYun, Deng, NaiYang. Lysine acetylation sites prediction using an ensemble of support vector machine classifiers. JOURNAL OF THEORETICAL BIOLOGY[J]. 2010, 第 4 作者264(1): 130-135, http://dx.doi.org/10.1016/j.jtbi.2010.01.013.
[54] 谢昱姝, 宋冰雪, 代宝乾, 吴凌云, 汪彤. 基于DEA和AHP的安全生产形势评价方法研究. 2010, 第 4 作者http://kns.cnki.net/KCMS/detail/detail.aspx?QueryID=0&CurRec=1711&recid=&FileName=ZNXX201010012030&DbName=IPFD9914&DbCode=IPFD&yx=&pr=&URLID=&bsm=.
[55] Liu, ZhiPing, Wu, LingYun, Wang, Yong, Zhang, XiangSun, Chen, Luonan. Prediction of protein-RNA binding sites by a random forest method with combined features. BIOINFORMATICS[J]. 2010, 第 2 作者26(13): 1616-1622, http://dx.doi.org/10.1093/bioinformatics/btq253.
[56] Ren, Xianwen, Zhou, Xiaobo, Wu, LingYun, Zhang, XiangSun. An information-flow-based model with dissipation, saturation and direction for active pathway inference. BMC SYSTEMS BIOLOGY[J]. 2010, 第 3 作者4(1): http://dx.doi.org/10.1186/1752-0509-4-72.
[57] XiangSun Zhang, LingYun Wu, Xiaobo Zhou, Xianwen Ren. An information-flow-based model with dissipation, saturation and direction for active pathway inference. 2010, 第 2 作者http://oa.las.ac.cn/oainone/service/browseall/read1?ptype=JA&workid=JA201706299276578ZK.
[58] Xia, Zheng, Wu, LingYun, Zhou, Xiaobo, Wong, Stephen T C. Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces. BMC SYSTEMS BIOLOGY[J]. 2010, 第 2 作者4(Suppl 2): S6-S6, http://dx.doi.org/10.1186/1752-0509-4-S2-S6.
[59] 吴凌云. DEA with weight constraints for evaluation of work safety supervision. Lecture Notes in Operations Research. 2010, 第 1 作者
[60] 陈兴, 王勇, 吴凌云, 闫桂英, 朱伟. 多阶段多目标多部门应急决策模型. 系统工程理论与实践[J]. 2010, 第 3 作者1977, http://lib.cqvip.com/Qikan/Article/Detail?id=35990344.
[61] Shao, Xiaojian, Tian, Yingjie, Wu, Lingyun, Wang, Yong, Jing, Ling, Deng, Naiyang. Predicting DNA- and RNA-binding proteins from sequences with kernel methods. JOURNAL OF THEORETICAL BIOLOGY[J]. 2009, 第 3 作者258(2): 289-293, http://dx.doi.org/10.1016/j.jtbi.2009.01.024.
[62] Wang, Yong, Wu, LingYun, Zhang, JiHong, Zhan, ZhongWei, Zhang, XiangSun, Chen, Luonan. Evaluating Protein Similarity from Coarse Structures. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS[J]. 2009, 第 2 作者6(4): 583-593, http://dx.doi.org/10.1109/TCBB.2007.70250.
[63] Wang, XiaoBo, Wu, LingYun, Wang, YongCui, Deng, NaiYang. Prediction of palmitoylation sites using the composition of k-spaced amino acid pairs. PROTEIN ENGINEERING DESIGN & SELECTION[J]. 2009, 第 2 作者22(11): 707-712, https://www.webofscience.com/wos/woscc/full-record/WOS:000271109800008.
[64] Wu, LingYun, Li, Zhenping, Wang, RuiSheng, Zhang, XiangSun, Chen, Luonan. Self-organizing map approaches for the haplotype assembly problem. MATHEMATICS AND COMPUTERS IN SIMULATION[J]. 2009, 第 1 作者79(10): 3026-3037, http://dx.doi.org/10.1016/j.matcom.2009.01.021.
[65] Huang, WanTing, Yang, Xiaorong, Zhou, Xiaobo, Monzon, Federico A, Wen, Jianguo, Hagenkord, Jill M, Wu, LingYun, KeeverTaylor, Carolyn, NovoaTakara, Louis, Wong, Stephen T C, Young, Kenneth, Chang, ChungChe. Multiple distinct clones may co-exist in different lineages in myelodysplastic syndromes. LEUKEMIA RESEARCH[J]. 2009, 第 7 作者33(6): 847-853, http://dx.doi.org/10.1016/j.leukres.2008.10.008.
[66] Yang, Xiaorong, Zhou, Xiaobo, Huang, WanTing, Wu, Lingyun, Monzon, Federico A, Chang, ChungChe, Wong, Stephen T C. Pattern-Selection Based Power Analysis and Discrimination of Low- and High-Grade Myelodysplastic Syndromes Study Using SNP Arrays. PLOS ONE[J]. 2009, 第 4 作者4(4): http://dx.doi.org/10.1371/journal.pone.0005054.
[67] Wu, LingYun, Zhou, Xiaobo, Li, Fuhai, Yang, Xiaorong, Chang, ChungChe, Wong, Stephen T C. Conditional random pattern algorithm for LOH inference and segmentation. BIOINFORMATICS[J]. 2009, 第 1 作者25(1): 61-67, https://www.webofscience.com/wos/woscc/full-record/WOS:000261996400010.
[68] Liu, ZhiPing, Wu, LingYun, Wang, Yong, Zhang, XiangSun, Chen, Luonan. Analysis of protein surface patterns by pocket similarity network. PROTEIN AND PEPTIDE LETTERS[J]. 2008, 第 2 作者  通讯作者  15(5): 448-455, http://www.corc.org.cn/handle/1471x/2348992.
[69] Zhang, JiHong, Wu, LingYun, Chen, Jian, Zhang, XiangSun. A fast haplotype inference method for large population genotype data. COMPUTATIONAL STATISTICS & DATA ANALYSIS[J]. 2008, 第 2 作者  通讯作者  52(11): 4891-4902, http://dx.doi.org/10.1016/j.csda.2008.04.004.
[70] Liu, ZhiPing, Wu, LingYun, Wang, Yong, Zhang, XiangSun, Chen, Luonan. Bridging protein local structures and protein functions. AMINO ACIDS[J]. 2008, 第 2 作者35(3): 627-650, http://www.corc.org.cn/handle/1471x/2349308.
[71] Liu ZhiPing, Wu LingYun, Wang Yong, Zhang XiangSun, Chen Luonan, Zhang XS, Chen LN, Wu LY, Wang Y. An approach for clustering protein pockets into similar groups. OPTIMIZATION AND SYSTEMS BIOLOGY. 2007, 第 2 作者  通讯作者  7: 204-+, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000250141900024.
[72] Liu ZhiPing, Wu LingYun, Wang Yong, Zhang XiangSun, Chen Luonan, Zhang XS, Chen LN, Wu LY, Wang Y. An approach for clustering protein pockets into similar groups. OPTIMIZATION AND SYSTEMS BIOLOGY. 2007, 第 2 作者  通讯作者  7: 204-+, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000250141900024.
[73] Zhang, XiangSun, Wang, RuiSheng, Wu, LingYun, Zhang, ShiHua, Cben, Luonan, Kim, SI, Suh, TS. Inferring Protein-Protein Interactions by Combinatorial Models. WORLD CONGRESS ON MEDICAL PHYSICS AND BIOMEDICAL ENGINEERING 2006, VOL 14, PTS 1-6. 2007, 第 3 作者14: 183-+, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000260855900044.
[74] Zhang, JiHong, Wu, LingYun, Zhao, YuYing, Zhang, XiangSun. An optimization approach to the reconstruction of positional DNA sequencing by hybridization with errors. EUROPEAN JOURNAL OF OPERATIONAL RESEARCH[J]. 2007, 第 2 作者182(1): 413-427, http://dx.doi.org/10.1016/j.ejor.2006.08.031.
[75] Wang Yong, Wu LingYun, Zhang XiangSun, Chen Luonan. Protein comparison based on both structure and sequence data. 10th world congress on medical physics and biomedical engineering, wc 2006. 2007, 第 2 作者174-177, http://www.corc.org.cn/handle/1471x/2383912.
[76] Wang, Yong, Wu, LingYun, Zhang, XiangSun, Chen, Luonan, Kim, SI, Suh, TS. Protein Comparison Based on Both Structure and Sequence Data. WORLD CONGRESS ON MEDICAL PHYSICS AND BIOMEDICAL ENGINEERING 2006, VOL 14, PTS 1-6. 2007, 第 2 作者14: 174-+, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000260855900042.
[77] Wang, RuiSheng, Wang, Yong, Wu, LingYun, Zhang, XiangSun, Chen, Luonan. Analysis on multi-domain cooperation for predicting protein-protein interactions. BMC BIOINFORMATICS[J]. 2007, 第 3 作者8(1): http://oa.las.ac.cn/oainone/service/browseall/read1?ptype=JA&workid=JA201706281692991ZK.
[78] Zhang XiangSun, Wang RuiSheng, Wu LingYun, Zhang ShiHua, Cben Luonan, Kim SI, Suh TS. Inferring Protein-Protein Interactions by Combinatorial Models. WORLD CONGRESS ON MEDICAL PHYSICS AND BIOMEDICAL ENGINEERING 2006, VOL 14, PTS 1-6. 2007, 第 3 作者14: 183-+, 
[79] Liu, ZhiPing, Wu, LingYun, Wang, Yong, Chen, Luonan, Zhang, XiangSun. Predicting gene ontology functions from protein's regional surface structures. BMC BIOINFORMATICS[J]. 2007, 第 2 作者  通讯作者  8(1): http://www.corc.org.cn/handle/1471x/2389114.
[80] Chen, Luonan, Wu, LingYun, Wang, Yong, Zhang, Shihua, Zhang, XiangSun. Revealing divergent evolution, identifying circular permutations and detecting active-sites by protein structure comparison. BMC STRUCTURAL BIOLOGY[J]. 2006, 第 2 作者6(1): 18-18, http://www.corc.org.cn/handle/1471x/2393803.
[81] 张世华, 吴凌云, 金光旭, 章祥荪. 一种简单的蛋白质结构分类方法（英文）. 2006, 第 2 作者http://kns.cnki.net/KCMS/detail/detail.aspx?QueryID=0&CurRec=3603&recid=&FileName=EGYL200608001060&DbName=CPFD9908&DbCode=CPFD&yx=&pr=&URLID=&bsm=.
[82] 李珍萍, 吴凌云, 章祥荪. 一类新的逆DEA模型（英文）. 2006, 第 2 作者http://kns.cnki.net/KCMS/detail/detail.aspx?QueryID=0&CurRec=3607&recid=&FileName=EGYL200608001130&DbName=CPFD9908&DbCode=CPFD&yx=&pr=&URLID=&bsm=.
[83] Wang, Yong, Wu, LingYun, Zhang, XiangSun, Chen, Luonan, Cai, JY, Cooper, SB, Li, A. Automatic classification of protein structures based on convex hull representation by integrated neural network. THEORY AND APPLICATIONS OF MODELS OF COMPUTATION, PROCEEDINGS[J]. 2006, 第 2 作者3959: 505-514, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000238091800048.
[84] Zhang, XiangSun, Wang, RuiSheng, Wu, LingYun, Zhang, Wei. Minimum Conflict Individual Haplotyping from SNP Fragments and Related Genotype. EVOLUTIONARY BIOINFORMATICS[J]. 2006, 第 3 作者2: 261-270, https://doaj.org/article/8c60769e73c44b519927d780a2ededed.
[85] Zhang, XiangSun, Wang, RuiSheng, Wu, LingYun, Chen, Luonan. Models and algorithms for haplotyping problem. CURRENT BIOINFORMATICS[J]. 2006, 第 3 作者1(1): 105-114, https://www.webofscience.com/wos/woscc/full-record/WOS:000244372700011.
[86] 詹钟炜, 王勇, 吴凌云, 章祥荪. 政府网站评估DEA模型. 运筹与管理[J]. 2006, 第 3 作者15(4): 97-102, http://lib.cqvip.com/Qikan/Article/Detail?id=22645196.
[87] 张继红, 吴凌云, 章祥荪. 允许长度估计误差的SBH最优重构问题及其算法. 应用数学学报[J]. 2005, 第 2 作者28(3): 385, http://lib.cqvip.com/Qikan/Article/Detail?id=18067092.
[88] 王勇, 詹钟炜, 吴凌云, 章祥荪. 改进的自组织映射（SOM）蛋白质折叠算法和计算实现. 系统科学与数学[J]. 2005, 第 3 作者25(5): 562, http://lib.cqvip.com/Qikan/Article/Detail?id=20275640.
[89] Zhang, XiangSun, Zhan, ZhongWei, Wang, Yong, Wu, LingYun, Zhang, XS, Liu, DG, Wu, LY. An attempt to explore the similarity of two proteins by their surface shapes. OPERATIONS RESEARCH AND ITS APPLICATIONS. 2005, 第 4 作者5: 288-296, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000237322000023.
[90] 张继红, 吴凌云, 王勇, 李珍萍, 章祥荪. 由基因型SNP数据推断相应单体型的Markov链统计方法（英文）. 2004, 第 2 作者http://kns.cnki.net/KCMS/detail/detail.aspx?QueryID=0&CurRec=3554&recid=&FileName=EGYL200410003050&DbName=CPFD9908&DbCode=CPFD&yx=&pr=&URLID=&bsm=.
[91] 王瑞省, 吴凌云, 张继红, 章祥荪. 单体型装配问题及其算法. 高校应用数学学报：A辑[J]. 2004, 第 2 作者19(B12): 515-528, http://lib.cqvip.com/Qikan/Article/Detail?id=20123394.

（1） Proceedings of 12th International Symposium on Operations Research and Its Applications, IET, 2015-08, 第 3 作者

已指导学生

孙端辰  博士研究生  070105-运筹学与控制论  

赵越  博士研究生  070105-运筹学与控制论  

张国维  博士研究生  1201Z1-管理运筹学  

黄孝鹏  博士研究生  070105-运筹学与控制论  

李淼  硕士研究生  070105-运筹学与控制论  

叶心函  硕士研究生  070105-运筹学与控制论  

高永航  硕士研究生  070105-运筹学与控制论  

王旭  博士研究生  1201Z1-管理运筹学  

彭鑫  博士研究生  070105-运筹学与控制论  

现指导学生

冷嘉承  博士研究生  070105-运筹学与控制论  

侯智超  硕士研究生  070105-运筹学与控制论  

于嘉汀  博士研究生  070105-运筹学与控制论  

蔡仁杰  硕士研究生  070105-运筹学与控制论  

高永航  博士研究生  070105-运筹学与控制论  

任涛  博士研究生  070105-运筹学与控制论  

张瑞扬  硕士研究生  070105-运筹学与控制论  

季泉宇  硕士研究生  070105-运筹学与控制论