基本信息
邓晔  男  博导  中国科学院生态环境研究中心
电子邮件: yedeng@rcees.ac.cn
通信地址: 北京市海淀区双清路18号
邮政编码: 100085

招生信息

   
招生专业
071300-生态学
071005-微生物学
071021-生物信息学
招生方向
微生物生态学
环境微生物技术
生物统计学

教育背景

2007-08--2009-07   美国俄克拉荷马大学   博士后
2002-08--2007-06   浙江大学   博士
1998-09--2002-06   中南大学   学士

工作经历

   
工作简历
2009-09~2014-01,美国俄克拉荷马大学, 研究科学家
社会兼职
2017-01-01-今,BMC Microbiology杂志, 编辑
2016-01-01-今,国际微生物生态学会, 中国青年大使
2016-01-01-今,Frontiers in Microbiology杂志, 编辑
2014-08-01-今,中国生态学会微生物生态专业委员会, 委员

教授课程

现代环境生物技术
分子生物学在环境生物技术中的应用

专利与奖励

   
专利成果
[1] 邓晔, 杜雄峰, 厉舒祯. 一种用于评估土壤微生物多样性的方法. CN: CN111455032A, 2020-07-28.

[2] 邓晔, 刘洋荧, 厉舒祯. 一种利用碳基纳米材料提升真菌群落检测准确性的方法. CN: CN108517369A, 2018-09-11.

[3] 邓晔, 魏子艳. 一种构建抗生素抗性基因数据库的方法. CN: CN108491692A, 2018-09-04.

[4] 邓晔, 厉舒帧, 宋茂勇. 一种利用碳基纳米材料提升细菌群落多样性检测准确性的方法. CN: CN108060219A, 2018-05-22.

出版信息

   
发表论文
[1] Li, Shuzhen, Deng, Ye, Lian, Shengyang, Dai, Chunxiao, Ma, Qiao, Qu, Yuanyuan. Succession of diversity, functions, and interactions of the fungal community in activated sludge under aromatic hydrocarbon stress. ENVIRONMENTAL RESEARCH[J]. 2022, 204: [2] Wang, Shang, Hou, Weiguo, Jiang, Hongchen, Huang, Liuqin, Dong, Hailiang, Chen, Shu, Wang, Bin, Chen, Yongcan, Lin, Binliang, Deng, Ye. Microbial diversity accumulates in a downstream direction in the Three Gorges Reservoir. JOURNAL OF ENVIRONMENTAL SCIENCES[J]. 2021, 101: 156-167, http://lib.cqvip.com/Qikan/Article/Detail?id=7103979051.
[3] Wang, Yingcheng, Lu, Guangxin, Yu, Hao, Du, Xiongfeng, He, Qing, Yao, Shiting, Zhao, Lirong, Huang, Caixia, Wen, Xiaocheng, Deng, Ye. Meadow degradation increases spatial turnover rates of the fungal community through both niche selection and dispersal limitation. SCIENCE OF THE TOTAL ENVIRONMENT[J]. 2021, 798: http://dx.doi.org/10.1016/j.scitotenv.2021.149362.
[4] Du, Xiongfeng, Deng, Ye, Li, Shuzhen, Escalas, Arthur, Feng, Kai, He, Qing, Wang, Zhujun, Wu, Yueni, Wang, Danrui, Peng, Xi, Wang, Shang. Steeper spatial scaling patterns of subsoil microbiota are shaped by deterministic assembly process. MOLECULAR ECOLOGY[J]. 2021, 30(4): 1072-1085, http://dx.doi.org/10.1111/mec.15777.
[5] Rueger, Lioba, Feng, Kai, Dumack, Kenneth, Freudenthal, Jule, Chen, Yan, Sun, Ruibo, Wilson, Monica, Yu, Peng, Sun, Bo, Deng, Ye, Hochholdinger, Frank, Vetterlein, Doris, Bonkowski, Michael. Assembly Patterns of the Rhizosphere Microbiome Along the Longitudinal Root Axis of Maize (Zea mays L.). FRONTIERS IN MICROBIOLOGY[J]. 2021, 12: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7906986/.
[6] Wang, Pei, Kong, Xiao, Chen, Hongsong, Xiao, Youlun, Liu, Huijun, Li, Xiaojuan, Zhang, Zhuo, Tan, Xinqiu, Wang, Diandong, Jin, Decai, Deng, Ye, Cernava, Tomislav. Exploration of Intrinsic Microbial Community Modulators in the Rice Endosphere Indicates a Key Role of Distinct Bacterial Taxa Across Different Cultivars. FRONTIERS IN MICROBIOLOGY[J]. 2021, 12: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7920960/.
[7] Ye Deng. Warming-driven migration of core microbiota projects soil property changes at continental scale. Science Bulletin. 2021, [8] 姚世庭, 芦光新, 邓晔, 范月君, 周华坤, 党宁, 王英成, 张海娟, 颜珲璘. 模拟增温对高寒草地土壤原核生物群落组成及多样性影响. 草地学报. 2021, 29(S01): 27-34, [9] Wei, Ziyan, Feng, Kai, Wang, Zhujun, Zhang, Yu, Yang, Min, Zhu, YongGuan, Virta, Marko P J, Deng, Ye. High-Throughput Single-Cell Technology Reveals the Contribution of Horizontal Gene Transfer to Typical Antibiotic Resistance Gene Dissemination in Wastewater Treatment Plants. ENVIRONMENTAL SCIENCE & TECHNOLOGY[J]. 2021, 55(17): 11824-11834, [10] Zhou, Yuqi, Sun, Baoyu, Xie, Baohua, Feng, Kai, Zhang, Zhaojing, Zhang, Zheng, Li, Shuzhen, Du, Xiongfeng, Zhang, Qi, Gu, Songsong, Song, Wen, Wang, Linlin, Xia, Jianyang, Han, Guangxuan, Deng, Ye. Warming reshaped the microbial hierarchical interactions. GLOBAL CHANGE BIOLOGY[J]. 2021, 27(24): 6331-6347, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000700272200001.
[11] 杨兴盛, 王尚, 何晴, 王朱珺, 张照婧, 姜成英, 马黎萍, 刘贤伟, 胡宝兰, 李咏梅, 邓晔. 典型有机固废厌氧消化微生物研究现状与发展方向. 生物工程学报. 2021, 37(10): 3425-3438, [12] Li, Enze, Deng, Tongchu, Yan, Lei, Zhou, Jizhong, He, Zhili, Deng, Ye, Xu, Meiying. Elevated nitrate simplifies microbial community compositions and interactions in sulfide-rich river sediments. SCIENCE OF THE TOTAL ENVIRONMENT[J]. 2021, 750: http://dx.doi.org/10.1016/j.scitotenv.2020.141513.
[13] 周煜琦, 张照婧, 位光山, 张政, 邓晔. 全球变化下海岸带微生物生态研究进展. 微生物学报. 2021, 61(6): 1743-1760, [14] 姚世庭, 芦光新, 邓晔, 党宁, 王英成, 张海娟, 颜珲璘. 模拟增温对土壤真菌群落组成及多样性的影响. 生态环境学报. 2021, 30(7): 1404-1411, [15] 王英成, 芦光新, 赵丽蓉, 邓晔, 王军邦. 高寒草甸退化对土壤电导率变化影响的研究. 干旱区研究. 2021, 104-113, http://www.chinaxiv.org/abs/202103.00056.
[16] 邓晔. 土壤中塑料与微生物的相互作用及其生态效应. 中国环境科学. 2021, [17] Hao Yu, Ye Deng, Zhili He, Elise Pendall, Yolima Carrillo, Shang Wang, Decai Jin, Liyou Wu, Aijie Wang, Ying Xu, Baoyong Liu, Xin Tai, Jizhong Zhou. Stimulation of soil microbial functioning by elevated CO2 may surpass effects mediated by irrigation in a semiarid grassland. Geoderma. 2021, 401: [18] Li, Hui, Yang, Shan, Semenov, Mikhail V, Yao, Fei, Ye, Ji, Bu, Rencang, Ma, Ruiao, Lin, Junjie, Kurganova, Irina, Wang, Xugao, Deng, Ye, Kravchenko, Irina, Jiang, Yong, Kuzyakov, Yakov. Temperature sensitivity of SOM decomposition is linked with a K-selected microbial community. GLOBAL CHANGE BIOLOGY[J]. 2021, 27(12): 2763-2779, http://dx.doi.org/10.1111/gcb.15593.
[19] Kang, Luyao, Chen, Leiyi, Zhang, Dianye, Peng, Yunfeng, Song, Yutong, Kou, Dan, Deng, Ye, Yang, Yuanhe. Stochastic processes regulate belowground community assembly in alpine grasslands on the Tibetan Plateau. ENVIRONMENTAL MICROBIOLOGY. 2021, [20] Li, Shuzhen, Deng, Ye, Du, Xiongfeng, Feng, Kai, Wu, Yueni, He, Qing, Wang, Zhujun, Liu, Yangying, Wang, Danrui, Peng, Xi, Zhang, Zhaojing, Escalas, Arthur, Qu, Yuanyuan. Sampling cores and sequencing depths affected the measurement of microbial diversity in soil quadrats. SCIENCE OF THE TOTAL ENVIRONMENT[J]. 2021, 767: http://dx.doi.org/10.1016/j.scitotenv.2021.144966.
[21] Dong, Yuzhu, Wu, Shanghua, Deng, Ye, Wang, Shijie, Fan, Haonan, Li, Xianglong, Bai, Zhihui, Zhuang, Xuliang. Distinct Functions and Assembly Mechanisms of Soil Abundant and Rare Bacterial Taxa Under Increasing Pyrene Stresses. FRONTIERS IN MICROBIOLOGY[J]. 2021, 12: http://dx.doi.org/10.3389/fmicb.2021.689762.
[22] Wang, Shang, Hou, Weiguo, Jiang, Hongchen, Dong, Hailiang, Huang, Liuqin, Chen, Shu, Wang, Bin, Chen, Yongcan, Lin, Binliang, Deng, Ye. The Lifestyle-Dependent Microbial Interactions Vary Between Upstream and Downstream of the Three Gorges Dam. FRONTIERS IN ECOLOGY AND EVOLUTION[J]. 2021, 9: https://doaj.org/article/4d26c9fc849446c4833aad73e1aaf1f3.
[23] Tan, Lin, Zeng, WeiAi, Xiao, Yansong, Li, Pengfei, Gu, Songsong, Wu, Shaolong, Zhai, Zhengguang, Feng, Kai, Deng, Ye, Hu, Qiulong. Fungi-Bacteria Associations in Wilt Diseased Rhizosphere and Endosphere by Interdomain Ecological Network Analysis. FRONTIERS IN MICROBIOLOGY[J]. 2021, 12: http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000698660200001.
[24] Qing He, Shang Wang, Weiguo Hou, Kai Feng, Fangru Li, Wanming Hai, Yidi Zhang, Yuxuan Sun, Ye Deng. Temperature and microbial interactions drive the deterministic assembly processes in sediments of hot springs. Science of the Total Environment. 2021, 772: [25] 王丹蕊, 沈文丽, 魏子艳, 王尚, 邓晔. 单细胞测序技术在微生物生态领域中的应用. 生物技术通报[J]. 2020, 36(10): 237-246, http://lib.cqvip.com/Qikan/Article/Detail?id=7103088615.
[26] 周文君. Exploring the accuracy of amplicon-based internal transcribed spacer (ITS) markers for fungal community. Molecular Ecology Resources. 2020, [27] 段云峰, 王升跃, 陈禹保, 杨瑞馥, 李后开, 朱怀球, 童贻刚, 杜文斌, 付钰, 胡松年, 王军, 辛玉华, 赵方庆, 鲍一明, 张雯, 李娟, 曾明, 牛海涛, 周欣, 李岩, 崔生辉, 袁静, 李俊桦, 王加义, 刘东来, 倪铭, 孙青, 邓晔, 朱宝利. 微生物组测序与分析专家共识. 生物工程学报[J]. 2020, 36(12): 2516-2524, http://lib.cqvip.com/Qikan/Article/Detail?id=7103610501.
[28] Hu, Qiulong, Tan, Lin, Gu, Songsong, Xiao, Yansong, Xiong, Xingyao, Zeng, Weiai, Feng, Kai, Wei, Zhong, Deng, Ye. Network analysis infers the wilt pathogen invasion associated with non-detrimental bacteria. NPJ BIOFILMS AND MICROBIOMES[J]. 2020, 6(1): https://doaj.org/article/ff3f926f23a944a6af50859e8b2773c4.
[29] 杜雄峰, 厉舒祯, 冯凯, 何晴, 王朱珺, 吴悦妮, 王丹蕊, 彭玺, 王尚, 邓晔. 农牧交错带草地土壤剖面微生物总量、多样性和互作网络的垂直分布特征. 微生物学通报[J]. 2020, 47(9): 2789-2806, http://lib.cqvip.com/Qikan/Article/Detail?id=7103088372.
[30] Zhao, Mengxin, Cong, Jing, Cheng, Jingmin, Qi, Qi, Sheng, Yuyu, Ning, Daliang, Lu, Hui, Wyckoff, Kristen N, Deng, Ye, Li, Diqiang, Zhou, Jizhong, Zhang, Yuguang. Soil Microbial Community Assembly and Interactions Are Constrained by Nitrogen and Phosphorus in Broadleaf Forests of Southern China. FORESTS[J]. 2020, 11(3): https://doaj.org/article/fd04d70a07b44885a48199f01991a2eb.
[31] 吴悦妮, 冯凯, 厉舒祯, 王朱珺, 张照婧, 邓晔. 16S/18S/ITS扩增子高通量测序引物的生物信息学评估和改进. 微生物学通报[J]. 2020, 47(9): 2897-2912, http://lib.cqvip.com/Qikan/Article/Detail?id=7103088381.
[32] Feng, Kai, Wang, Shang, Wei, Ziyan, Wang, Zhujun, Zhang, Zhaojing, Wu, Yueni, Zhang, Yuguang, Deng, Ye. Niche width of above- and below-ground organisms varied in predicting biodiversity profiling along a latitudinal gradient. MOLECULAR ECOLOGY[J]. 2020, 29(10): 1890-1902, https://www.webofscience.com/wos/woscc/full-record/WOS:000530849200001.
[33] Tu, Qichao, Yan, Qingyun, Deng, Ye, Michaletz, Sean T, Buzzard, Vanessa, Weiser, Michael D, Waide, Robert, Ning, Daliang, Wu, Liyou, He, Zhili, Zhou, Jizhong. Biogeographic patterns of microbial co-occurrence ecological networks in six American forests. SOIL BIOLOGY & BIOCHEMISTRY[J]. 2020, 148: http://dx.doi.org/10.1016/j.soilbio.2020.107897.
[34] Wu, Yueni, Feng, Kai, Wei, Ziyan, Wang, Zhujun, Deng, Ye. ARDEP, a Rapid Degenerate Primer Design Pipeline Based onk-mers for Amplicon Microbiome Studies. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH[J]. 2020, 17(16): https://www.webofscience.com/wos/woscc/full-record/WOS:000565150300001.
[35] Lian, Shengyang, Qu, Yuanyuan, Li, Shuzhen, Zhang, Zhaojing, Zhang, Henglin, Dai, Chunxiao, Deng, Ye. Interaction of graphene-family nanomaterials with microbial communities in sequential batch reactors revealed by high-throughput sequencing. ENVIRONMENTAL RESEARCH[J]. 2020, 184: http://dx.doi.org/10.1016/j.envres.2020.109392.
[36] Li, Shuzhen, Wang, Zhujun, Wang, Yuanyuan, Song, Maoyong, Lu, Guangxin, Dang, Ning, Yin, Huaqun, Qu, Yuanyuan, Deng, Ye. Effects of graphene oxide on PCR amplification for microbial community survey. BMC MICROBIOLOGY[J]. 2020, 20(1): http://dx.doi.org/10.1186/s12866-020-01965-7.
[37] Zhang, Zhaojing, Qu, Yuanyuan, Li, Shuzhen, Feng, Kai, Cai, Weiwei, Yin, Huaqun, Wang, Shang, Liu, Wenzong, Wang, Aijie, Deng, Ye. Florfenicol restructured the microbial interaction network for wastewater treatment by microbial electrolysis cells. ENVIRONMENTAL RESEARCH[J]. 2020, 183: http://dx.doi.org/10.1016/j.envres.2020.109145.
[38] Tai, Xin, Li, Rui, Zhang, Bao, Yu, Hao, Kong, Xiao, Bai, Zhihui, Deng, Ye, Jia, Lan, Jin, Decai. Pollution Gradients Altered the Bacterial Community Composition and Stochastic Process of Rural Polluted Ponds. MICROORGANISMS[J]. 2020, 8(2): https://doaj.org/article/5a753f7a9abe41789d50412cbb08131f.
[39] He, Zhili, Deng, Ye, Xu, Meiying, Li, Juan, Liang, Junyi, Xiong, Jinbo, Yu, Hao, Wu, Bo, Wu, Liyou, Xue, Kai, Shi, Shengjing, Carrillo, Yolima, Van Nostrand, Joy D, Hobbie, Sarah E, Reich, Peter B, Schadt, Christopher W, Kent, Angela D, Pendall, Elise, Wallenstein, Matthew, Luo, Yiqi, Yan, Qingyun, Zhou, Jizhong. Microbial functional genes commonly respond to elevated carbon dioxide. ENVIRONMENT INTERNATIONAL[J]. 2020, 144: http://dx.doi.org/10.1016/j.envint.2020.106068.
[40] Li, Shuzhen, Deng, Ye, Wang, Zhujun, Zhang, Zhaojing, Kong, Xiao, Zhou, Wenjun, Yi, Yanyun, Qu, Yuanyuan. Exploring the accuracy of amplicon-based internal transcribed spacer markers for a fungal community. MOLECULAR ECOLOGY RESOURCES[J]. 2020, 20(1): 170-184, https://www.webofscience.com/wos/woscc/full-record/WOS:000494520400001.
[41] 厉舒祯, 邓晔, 张照婧, 曲媛媛. 生物降解芳香族化合物的分子检测技术研究进展. 中国环境科学[J]. 2019, 39(6): 2577-2587, http://lib.cqvip.com/Qikan/Article/Detail?id=7002213609.
[42] Qin, Huayu, Wang, Shang, Feng, Kai, He, Zhili, Virta, Marko P J, Hou, Weiguo, Dong, Hailiang, Deng, Ye. Unraveling the diversity of sedimentary sulfate-reducing prokaryotes (SRP) across Tibetan saline lakes using epicPCR. MICROBIOME[J]. 2019, 7(1): https://doaj.org/article/98a85da2510846ba9312afc83927abb2.
[43] Feng, Kai, Zhang, Yuguang, He, Zhili, Ning, Daliang, Deng, Ye. Interdomain ecological networks between plants and microbes. MOLECULAR ECOLOGY RESOURCES[J]. 2019, 19(6): 1565-1577, https://www.webofscience.com/wos/woscc/full-record/WOS:000487516000001.
[44] Zhu, Tingting, Cai, Weiwei, Wang, Bo, Liu, Wenzong, Feng, Kai, Deng, Ye, Wang, Aijie. Enhanced nitrate removal in an Fe-0-driven autotrophic denitrification system using hydrogen-rich water. ENVIRONMENTAL SCIENCE-WATER RESEARCH & TECHNOLOGY[J]. 2019, 5(8): 1380-1388, https://www.webofscience.com/wos/woscc/full-record/WOS:000477038200002.
[45] Yang, Yuzhan, Gao, Yangchun, Huang, Xuena, Ni, Ping, Wu, Yueni, Deng, Ye, Zhan, Aibin. Adaptive shifts of bacterioplankton communities in response to nitrogen enrichment in a highly polluted river. ENVIRONMENTAL POLLUTION[J]. 2019, 245: 290-299, http://dx.doi.org/10.1016/j.envpol.2018.11.002.
[46] Liang, Bin, Ma, Jincai, Cai, Weiwei, Li, Zhiling, Liu, Wenzong, Qi, Mengyuan, Zhao, Youkang, Ma, Xiaodan, Deng, Ye, Wang, Aijie, Zhou, Jizhong. Response of chloramphenicol-reducing biocathode resistome to continuous electrical stimulation. WATER RESEARCH[J]. 2019, 148: 398-406, http://dx.doi.org/10.1016/j.watres.2018.10.073.
[47] Zhujun Wang, Guangxin Lu, Mengting Yuan, Hao Yu, Shang Wang, Xin Li, Ye Deng. Elevated temperature overrides the effects of N amendment in Tibetan grassland on soil microbiome. Soil Biology and Biochemistry. 2019, 136: 107532-, http://dx.doi.org/10.1016/j.soilbio.2019.107532.
[48] Kong, Xiao, Jin, Decai, Tai, Xin, Yu, Hao, Duan, Guilan, Yan, Xiulan, Pan, Jiangang, Song, Junhua, Deng, Ye. Bioremediation of dibutyl phthalate in a simulated agricultural ecosystem by Gordonia sp. strain QH-11 and the microbial ecological effects in soil. SCIENCE OF THE TOTAL ENVIRONMENT[J]. 2019, 667: 691-700, http://ir.igsnrr.ac.cn/handle/311030/48641.
[49] Gu, Songsong, Hu, Qiulong, Liu, Zhonghua, Xiao, Wenjun, Gong, Zhihua, Cheng, Yuqi, Deng, Ye, Feng, Kai, Tan, Lin. Comparative Study on Soil Microbial Community Structure and Diversity in Five Tea (Camellia sinensis) Cultivars. INTERNATIONAL JOURNAL OF AGRICULTURE AND BIOLOGY[J]. 2019, 22(6): 1553-1559, http://dx.doi.org/10.17957/IJAB/15.1234.
[50] Cai, Weiwei, Liu, Wenzong, Zhang, Zhaojing, Feng, Kai, Ren, Ge, Pu, Chuanliang, Li, Jiaqi, Deng, Ye, Wang, Aijie. Electro-driven methanogenic microbial community diversity and variability in the electron abundant niche. SCIENCE OF THE TOTAL ENVIRONMENT[J]. 2019, 661: 178-186, http://dx.doi.org/10.1016/j.scitotenv.2019.01.131.
[51] Gu, Songsong, Hu, Qiulong, Cheng, Yuqi, Bai, Lianyang, Liu, Zhonghua, Xiao, Wenjun, Gong, Zhihua, Wu, Yueni, Feng, Kai, Deng, Ye, Tan, Lin. Application of organic fertilizer improves microbial community diversity and alters microbial network structure in tea (Camellia sinensis) plantation soils. SOIL & TILLAGE RESEARCH[J]. 2019, 195: http://dx.doi.org/10.1016/j.still.2019.104356.
[52] 何晴, 王尚, 邓晔. 分子生物学技术在热泉地质微生物学研究中的应用. 微生物学报[J]. 2019, 59(6): 996-1011, http://lib.cqvip.com/Qikan/Article/Detail?id=7002209577.
[53] Kong, Xiao, Jin, Decai, Wang, Xinxin, Zhang, Fengsong, Duan, Guilan, Liu, Huijun, Jia, Minghong, Deng, Ye. Dibutyl phthalate contamination remolded the fungal community in agro-environmental system. CHEMOSPHERE[J]. 2019, 215: 189-198, http://ir.igsnrr.ac.cn/handle/311030/51528.
[54] Zhang, Zhaojing, Deng, Ye, Feng, Kai, Cai, Weiwei, Li, Shuzhen, Yin, Huaqun, Xu, Meiying, Ning, Daliang, Qu, Yuanyuan. Deterministic Assembly and Diversity Gradient Altered the Biofilm Community Performances of Bioreactors. ENVIRONMENTAL SCIENCE & TECHNOLOGY[J]. 2019, 53(3): 1315-1324, https://www.webofscience.com/wos/woscc/full-record/WOS:000458220600029.
[55] Liu, Yangying, Wang, Shang, Wang, Zhujun, Zhang, Zhaojing, Qin, Huayu, Wei, Ziyan, Feng, Kai, Li, Shuzhen, Wu, Yueni, Yin, Huaqun, Li, Hui, Deng, Ye. Soil microbiome mediated nutrients decline during forest degradation process. SOIL ECOLOGY LETTERS[J]. 2019, 1(1-2): 59-71, http://dx.doi.org/10.1007/s42832-019-0009-7.
[56] Ning, Daliang, Deng, Ye, Tiedje, James M, Zhou, Jizhong. A general framework for quantitatively assessing ecological stochasticity. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2019, 116(34): 16892-16898, http://dx.doi.org/10.1073/pnas.1904623116.
[57] Buzzard, Vanessa, Michaletz, Sean T, Deng, Ye, He, Zhili, Ning, Daliang, Shen, Lina, Tu, Qichao, Van Nostrand, Joy D, Voordeckers, James W, Wang, Jianjun, Weiser, Michael D, Kaspari, Michael, Waide, Robert B, Zhou, Jizhong, Enquist, Brian J. Continental scale structuring of forest and soil diversity via functional traits. NATURE ECOLOGY & EVOLUTION[J]. 2019, 3(9): 1298-1308, http://dx.doi.org/10.1038/s41559-019-0954-7.
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[190] Jin, Decai, Zhu, Ying, Wang, Xinxin, Kong, Xiao, Liu, Huijun, Wang, Yafeng, Deng, Ye, Jia, Minghong. Draft Genome Sequence of Sphingobium yanoikuyae TJ, a Halotolerant Di-n-Butyl-Phthalate-Degrading Bacterium. MICROBIOLOGY RESOURCE ANNOUNCEMENTS[J]. 2016, 4(3): [191] Xu, Tianle, Veresoglou, Stavros D, Chen, Yongliang, Rillig, Matthias C, Xiang, Dan, Ondrej, Daniel, Hao, Zhipeng, Liu, Lei, Deng, Ye, Hu, Yajun, Chen, Weiping, Wang, Juntao, He, Jizheng, Chen, Baodong. Plant community, geographic distance and abiotic factors play different roles in predicting AMF biogeography at the regional scale in northern China. ENVIRONMENTAL MICROBIOLOGY REPORTS[J]. 2016, 8(6): 1048-1057, http://dx.doi.org/10.1111/1758-2229.12485.
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[202] Jizhong Zhou, Zhili He, Yunfeng Yang, Ye Deng, Susannah G Tringe, Lisa AlvarezCohen. High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats. MBIOnull. 2015, 6(1): http://dx.doi.org/10.1128/mBio.02288-14.
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[205] 邓晔. 使用宏基因组和网络分析揭示土壤微生物在森林林线附近的分布. Scientific Reports. 2015, [206] Ding, Junjun, Zhang, Yuguang, Deng, Ye, Cong, Jing, Lu, Hui, Sun, Xin, Yang, Caiyun, Yuan, Tong, Van Nostrand, Joy D, Li, Diqiang, Zhou, Jizhong, Yang, Yunfeng. Integrated metagenomics and network analysis of soil microbial community of the forest timberline. SCIENTIFIC REPORTS[J]. 2015, 5: http://ir.rcees.ac.cn/handle/311016/32795.
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发表著作
( 1 ) 分子生态网络分析, Molecular ecological network analysis, Springer, 2014-06, 第 1 作者
( 2 ) 生物芯片数据分析, Microarray data analysis, Horizon Scientific Press, 2014-06, 第 1 作者

科研活动

   
科研项目
( 1 ) 生产过程中抗生素与抗药基因的排放特征、环境行为及控制技术, 参与, 国家级, 2015-01--2019-12
( 2 ) 典型森林土壤微生物空间格局及驱动机制, 参与, 部委级, 2014-01--2018-12
( 3 ) 东江高度集约开发区域水质风险控制与水生态功能恢复技术集成及综合示范, 参与, 国家级, 2015-01--2017-12
( 4 ) 长江流域自然保护区内土壤微生物群落的种-面积关系变化与驱动机制, 主持, 国家级, 2016-01--2016-12
( 5 ) 污染环境中功能微生物类群的快速识别和原位调控, 主持, 部委级, 2016-09--2020-12
( 6 ) 北方农牧交错带草地退化形成机理与驱动机制, 参与, 国家级, 2016-07--2020-12
参与会议
(1)微生物群落网络分析在重金属铀污染环境中研究   美国微生物学会2013年度大会   Ye Deng   2013-06-22
(2)微生物群落网络分析   美国微生物学会2011年度大会   Ye Deng   2011-06-22

合作情况

Dr. Jizhong Zhou (University of Oklahoma)
Dr. James M. Tiedje (Michigan State University)
Dr. James Hemphill Brown (Univ of New Mexico)
Dr. Joan B. Rose (Michigan State University)
Dr. Terry C. Hazen (LBL, University of Tennessee)
Dr. Rob Knight (University of Colorado)
Dr. Nianzhi Jiao (Xiamen Univ)

指导学生

现指导学生

魏子艳  01  19368  

刘洋荧  02  67011  

孔晓  01  19367  

王朱珺  01  19367  

吴悦妮  01  19367  

杜雄峰  02  67011  

秦化宇  01  67674  

冯凯  01  67674