基本信息
宋述慧 女 硕导 北京基因组研究所
电子邮件:songshh@big.ac.cn
通信地址:北京市朝阳区北土城西路7号G座中科院北京基因组研究所
邮政编码:100029

教育背景

2003-09--2008-01 中国科学院北京基因组研究所 遗传学 博士学位
1999-09--2011-07 山西师范大学 生物学 理学学士

工作经历

2011-01--至今 中国科学院北京基因组研究所 副研究员
2008-04--2010-12 中国科学院北京基因组研究所 助理研究员

出版信息

2007年
1. Song S, Qu H, Chen C, Hu S, Yu J: Differential gene expression in an elite hybrid rice cultivar (Oryza sativa, L) and its parental lines based on SAGE data. BMC Plant Biol 2007, 7:49. IF: 3.847
2008年
2. Song S, Huang Y, Wang X, Wei G, Qu H, Wang W, Ge X, Hu S, Liu G, Liang Y et al: HRGD: a database for mining potential heterosis-related genes in plants. Plant Mol Biol 2008. IF: 3.23
3. Wang W, Meng B, Ge X, Song S, Yang Y, Yu X, Wang L, Hu S, Liu S, Yu J: Proteomic profiling of rice embryos from a hybrid rice cultivar and its parental lines. Proteomics 2008, 8(22):4808-4821. IF: 5.479
4. Ge X, Chen W, Song S, Wang W, Hu S, Yu J: Transcriptomic profiling of mature embryo from an elite super-hybrid rice LYP9 and its parental lines. BMC Plant Biol 2008, 8:20. IF: 3.23
5. Zhu J, He F, Song S, Wang J, Yu J: How many human genes can be defined as housekeeping with current expression data? BMC Genomics 2008, 9:11. IF: 4.18
2009年
6. Zhao D*, Song S*, Wang Q, Zhang X, Hu S, Chen L: Discovery of immune-related genes in Chinese mitten crab (Eriocheir sinensis) by expressed sequence tag analysis of haemocytes. Aquaculture 2009, 287(3-4):297-303. IF: 1.735
7. Xu X*, Song S*, Wang Q, Qin F, Liu K, Zhang X, Hu S, Zhao Y: Analysis and comparison of a set of expressed sequence tags of the parthenogenetic water flea Daphnia carinata. Mol Genet Genomics 2009, 282(2):197-203. IF:2.838
2010年
8 Yang M., Song S., Liu G., Chen K., Tian X., Zhao Z., Hu S., Yu J. A comprehensive analysis of protein phosphatases in rice and Arabidopsis. Plant Syst Evol. 2010, 289:111–126 IF:1.41
9. Hao, Y., Huang, D., Guo, H., Xiao, M., An, H., Zhao, L., Zuo, F., Zhang, B., Hu, S., Song, S. et al. 2010. Complete Genome Sequence of Bifidobacterium longum subsp. longum BBMN68, a New Strain from a Healthy Chinese Centenarian. Journal of Bacteriology 193(3): 787-788. IF: 3.94
10 Liu, W., Huang, D., Liu, K., Hu, S., Yu, J., Gao, G., and Song, S. 2010. Discovery, Identification and Comparative Analysis of Non-Specific Lipid Transfer Protein (nsLtp) Family in Solanaceae. Genomics, Proteomics & Bioinformatics 8(4): 229-237. (通讯作者)
2011年
11 Zhao, W., Liu, W., Tian, D., Tang, B., Wang, Y., Yu, C., Li, R., Ling, Y., Wu, J., Song, S. et al. 2011. wapRNA: a web-based application for the processing of RNA sequences. Bioinformatics 27(21): 3076-3077. IF:4.877 (通讯作者)
12 Yuan, J., Liu, W., Sun, M., Song, S., Cai, J., and Hu, S. 2011. Complete Genome Sequence of the Pathogenic Bacterium Riemerella anatipestifer Strain RA-GD. Journal of Bacteriology 193(11): 2896-2897. IF: 3.94
13. Liu, W., Zhao, Y., Cui,P., Lin,Q., Ding, F., Xin, C., Tan,X., Song, S., Yu J., and Hu, S., 2011. Thousands of Novel Transcripts Identified in Mouse Cerebrum, Testis, and ES Cells Based on ribo-minus RNA Sequencing. Front Genet 2: 93.
2012年
14. Cui P, Liu W, Zhao Y, Lin Q, Ding F, Xin C, Geng J, Song S, Sun F, Hu S, Yu J. 2012. The Association Between H3K4me3 and Antisense Transcription.Genomics Proteomics Bioinformatics. Apr; 10(2):74-81.
15. Peng Cui, Wanfei Liu, Yuhui Zhao, Qiang Lin, Daoyong Zhang, Feng Ding, Chengqi Xin, Zhang Zhang, Shuhui Song, Fanglin Sun, Jun Yu, Songnian Hu. 2012. Comparative Analyses of H3K4 and H3K27 Trimethylations Between the Mouse Cerebrum and Testis. Genomics Proteomics Bioinformatics. Apr; 10(2):82-93.
16. Ma, Jun-Yu, Li, Mo, Ge, Zhao-Jia, Luo, Yibo, Ou, Xiang-Hong, Song, Shuhui, Tian, Dongmei, Yang, Jin, Zhang, Bing, Ou-Yang, Ying-Chun, Hou, Yi, Liu, Zhonghua, Heide Schatten4, Sun Qing-Yuan Whole Transcriptome Analysis of the Effects of Type I Diabetes on Mouse Oocytes Plos One, 7(7), 2012/7/24. IF: 4.092
17. Junhua Jin1, Bing Zhang2, Huiyuan Guo1,3, Jianyun Cui1, Lu Jiang1,4, Shuhui Song2, Min Sun2, Fazheng Ren1,4* Mechanism Analysis of Acid Tolerance Response of Bifidobacterium longum subsp. longum BBMN 68 by Gene Expression Profile Using RNA-Sequencing IF: 4.092
18. Peng Sun 1, Shuhui Song 2, Lili Zhou 1, Bing Zhang 2, Jianjun Qi 1 and Xianen Li 1,* Transcriptome Analysis Reveals Putative Genes Involved in Iridoid Biosynthesis in Rehmannia glutinosa Int. J. Mol. Sci. 2012, 13(10), 13748-13763; doi:10.3390/ijms131013748 IF:2.598
2013年
19. Zheng G, Dahl JA, Niu Y, Fedorcsak P, Huang CM, Li CJ, Vågbø CB, Shi Y, Wang WL, Song SH, Lu Z, Bosmans RP, Dai Q, Hao YJ, Yang X, Zhao WM, Tong WM, Wang XJ, Bogdan F, Furu K, Fu Y, Jia G, Zhao X, Liu J, Krokan HE, Klungland A, Yang YG, He C ALKBH5 Is a Mammalian RNA Demethylase that Impacts RNA Metabolism and Mouse Fertility Mol Cell. 2013 Jan 10;49(1):18-29. doi: 10.1016/j.molcel.2012.10.015. Epub 2012 Nov 21. IF:14.178
20. Yuli Li, Shuhui Song, Cuiping Li, Jun Yu MeRIP-PF: An Easy-to-use Pipeline for High-resolution Peak-finding in MeRIP-Seq Data (GPB) 

其他成果(数据库、软件及软件著作权)
杂种优势潜在相关基因数据HRGD:http://hrgd.big.ac.cn/
RNA-seq在线分析软件WAP-RNA: http://waprna.big.ac.cn/ 
wapRNA:基于高通量测序的在线RNA分析软件 [著作权登记号:2012SR0832]

承担项目

(1) 水稻5-羟甲基胞嘧啶表观遗传调控的研究, 主持, 国家自然基金面上项目,国家级, 2013--2016
(2) 超级杂交稻5羟甲基表观遗传的研究, 主持,北京市科技新星计划项目,2012-2015
(3) 基于杂种优势潜在相关基因数据库的基因调控网络的构建与比较分析,主持,国家自然基金青年项目 国家级,2010--2012
(4) 重要热带作物木薯品种改良的基础研究,参与,国家级,2010--2014
(5) 第二代高通量转录组测序数据的非编码RNA鉴定与分析方法的研究,参与,院级,2010--2012
(6) 系统生物学中多组学综合数据库,参与,院级,2009--2010

招生信息

2014年拟招收1名硕士,欢迎生物学、数理统计、计算机、与生物信息学等背景的学生报名