General

Binbin Liu 

Chinese Academy of Scineces, Center for Agricultural Resources Research

Tel: 0311-85817713

Email: binbinliu@sjziam.ac.cn

Address: Huaizhong Rd 286, 050022 Shijiazhuang,China 


Research Areas

Mcirobiology, Microbial ecology, Bioinfomatics

Publications

   
Papers

1.        Liu B, Frostegård Å, Bakken LR. Impaired reduction of N2O to N2 in acid soils is due to a posttranscriptional interference with the expression of nosZ. 2014. mBio 5(3):e01383-14. doi:10.1128/mBio.01383-14. (IF:6.875)

2.        Bergaust LL, Hartsock A, Liu B, Bakken L, Shapleigh JP. The role of norEF in denitrification, elucidated by physiological experiments with Rhodobacter sphaeroides. J Bacteriol. 2014 (Published ahead of print, doi: 10.1128/JB.00003-14) (IF:2.688)

3.        Liu B, Frostegård A, Shapleigh JP. Draft genome sequences of five strains in the genus thauera. Genome Announc. 2013, 1(1). doi: 10.1128/genomeA.00052-12.

4.        Stern AM, Liu B, Bakken LR, Shapleigh JP, Zhu J. A novel protein protects bacterial iron-dependent metabolism from nitric oxide. J Bacteriol. 2013, 195(20):4702-8. doi: 10.1128/JB.00836-13. ( IF:2.688 )

5.        Liu B, Mao Y, Bergaust L, Bakken LR, Frostegård A. Strains in the genus Thauera exhibit remarkably different denitrification regulatory phenotypes. Environ Microbiol. 2013; 15(10): 2816-28. doi: 10.1111/1462-2920.12142. (IF:6.24)

6.        Bakken LR, Bergaust L, Liu B, Frostegård A. Regulation of denitrification at the cellular level: a clue to the understanding of N2O emissions from soils. Philos Trans R Soc Lond B Biol Sci. 2012, 367(1593):1226-34. doi: 10.1098/rstb.2011.0321. (IF:6.314)

7.        Degefu T, Wolde-meskel E, Liu B, Cleenwerck I, Willems A, Frostegård A Mesorhizobium shonense sp. nov., Mesorhizobium hawassense sp. nov. and Mesorhizobium abyssinicae sp. nov., isolated from root nodules of different agroforestry legume trees. Int. J. Syst. Evol. Microbiol Int. J. Syst. Evol. Microbiol Int. J. Syst. Evol. MicrobiolInt. J. Syst. Evol. Microbiol. 2013, 63(5):1746-1753 doi:10.1099/ijs.0.044032-0. (IF:2.798)

8.        Liu B, Mørkved PT, Frostegård A, Bakken LR. Denitrification gene pools, transcription and kinetics of NO, N2O and N2 production as affected by soil pH. FEMS Microbiol Ecol. 2010; 72(3):407-17. doi: 10.1111/j.1574-6941.2010.00856.x. (IF:3.875)

9.        Falk S, Liu B, Braker G. Isolation, genetic and functional characterization of novel soil nirK-type denitrifiers. Syst Appl Microbiol. 2010,33(6):337-47. doi: 10.1016/j.syapm.2010.06.004. ( IF:3.310)

10.     Hong X, Zhang X, Liu B, Mao Y, Liu Y, Zhao L. Structural differentiation of bacterial communities in indole-degrading bioreactors under denitrifying and sulfate-reducing conditions. Res Microbiol. 2010 Oct;161(8):687-93. doi: 10.1016/j.resmic.2010.06.010. (IF:2.826)

11.     Zhang M, Zhang M, Zhang C, Du H, Wei G, Pang X, Zhou H, Liu B, Zhao L. Pattern extraction of structural responses of gut microbiota to rotavirus infection via multivariate statistical analysis of clone library data. FEMS Microbiol Ecol. 2009; 70(2):21-9. doi: 10.1111/j.1574-6941.2009.00694.x. (IF:3.875)

12.     Mao Y, Zhang X, Yan X, Liu B, Zhao L. Development of group-specific PCR-DGGE fingerprinting for monitoring structural changes of Thauera spp. in an industrial wastewater treatment plant responding to operational perturbations. J Microbiol Methods. 2008,75(2):231-6. doi: 10.1016/j.mimet.2008.06.005. (IF: 2.096)

13.     Yan X, Xu Z, Feng X, Liu Y, Liu B, Zhang X, Zhu C, Zhao L. Cloning of environmental genomic fragments as physical markers for monitoring microbial populations in coking wastewater treatment system. Microb Ecol. 2007; 53(1):163-72.  (IF:3.118)

14.     Liu B, Zhang F, Feng X, Liu Y, Yan X, Zhang X, Wang L, Zhao L. Thauera and Azoarcus as functionally important genera in a denitrifying quinoline-removal bioreactor as revealed by microbial community structure comparison. FEMS Microbiol Ecol. 2006, 55(2): 274-286. (IF:3.875)

15.     Lin Y, He Y, Kong H, Liu B, Li Y, Inamon Y. Isolation and characterization of heterotrophic nitrifying bacteria in MBR. J Environ Sci (China). 2005,17(4):589-92  (IF:1.922)


Research Interests

Our primary research interests lie in the fields of microbial ecology and bioinformatics, focus on mcirobial processes in agricultural soils, with high throughput sequencing technologies,especially with metagenomic tools.


Conferences

Liu, Binbin; Bakken, Lars; Frostegård, Åsa. Unravelling the dynamic transcriptional microbial community in a high denitrification activity soil by amplicons sequencing. 2d Thunen Symposium on Soil Metagenomics - mining and learning from metagenomes; 2013.12.11-13

Liu, Binbin; Mao, Y; Bergaust, Linda; Shapleigh, James P; Bakken, Lars; Frostegård, Åsa. Genotype-phenotype relationship in denitrifying bacteria?. Bageco 12 - 12th Symposium on Bacterial Genetics and Ecology; 2013.06.09-13.

 

Liu, Binbin; Zhang, Xiaojun; Bakken, Lars; Frostegård, Åsa. Identification of key player groups of denitrifiers in an organic agricultural soil by high-throughput sequencing techniques. 17th European Nitrogen Cycle Meeting; 2012.09.26-28

 



Students

已指导学生

李文彦  硕士研究生  085238-生物工程  

刘梦帅  硕士研究生  085238-生物工程  

陈帅民  博士研究生  071300-生态学  

王晓改  博士研究生  071300-生态学  

韩婉雪  硕士研究生  085238-生物工程  

苑霖  硕士研究生  071300-生态学  

张琳琦  博士研究生  071300-生态学  

李富玉  硕士研究生  071300-生态学  

赵会成  博士研究生  071300-生态学  

李文彦  博士研究生  071300-生态学  

现指导学生

郑玉冲  硕士研究生  071300-生态学  

韩婉雪  博士研究生  071300-生态学  

刘美玉  硕士研究生  071300-生态学  

王贺  硕士研究生  071300-生态学  

虞竹韵  博士研究生  071300-生态学