鲸类保护遗传学与分子生态学，鲸类微生物组学与病原菌。

保护遗传学（围绕长江江豚物种保护工作的需要，较系统地开展遗传标记开发、遗传多样性评估、遗传结构与种群历史分析、亲子鉴定与遗传谱系构建、迁地保护种群的遗传监测与种群管理、种群衰退的遗传学机理等保护遗传学研究，从遗传学角度为该濒危种群的保护和管理提供理论依据）；分子生态学（以长江江豚为研究对象，利用遗传学手段开展配偶选择机制、社群行为等分子生态学研究）；适应性进化（从基因、基因组、转录组等不同层面探索鲸类的种群遗传分化与适应性进化）；微生物组学与致病菌鉴定研究（系统开展江豚肠道和呼吸道微生物组学以及致病菌鉴定研究，为迁地保护群体和人工繁养群体的健康监测和种群管理以及疾病诊断与预防提供科学依据）。

   

071002-动物学

鲸类保护遗传学与分子生态学，鲸类微生物组学与病原菌鉴定

2000-09--2005-12   中国科学院水生生物研究所   理学博士
1995-09--1999-06   华中农业大学水产学院   农学学士

研究生

博士

   

2021-01~现在, 中国科学院水生生物研究所, 项目研究员
2013-11~2020-12,中国科学院水生生物研究所, 副研究员
2005-12~2013-11,中国科学院水生生物研究所, 助理研究员

保护遗传学

   

（1） 长江江豚迁地保护, 一等奖, 省级, 2008

（ 1 ） 一种水族馆水下网络摄像装置, 实用新型, 2019, 第 3 作者, 专利号: ZL201920647826.5
（ 2 ） 一种小型齿鲸野外救护维生系统, 实用新型, 2021, 第 3 作者, 专利号: ZL2020 2 0941988.2
（ 3 ） 一种用于测量人工饲养鲸类呼吸代谢的装置, 发明, 2021, 第 5 作者, 专利号: ZL2019 1 0514226.0

代表性论文（*，通讯作者；#，并列第一作者）：

1.      Wan XL, McLaughlin RW, Zheng JS*, Hao YJ, Fan F, Tian RM, Wang D. 2018. Microbial communities in different regions of the gastrointestinal tract in East Asian finless porpoises (Neophocaena asiaeorientalis sunameri). Scientific Reports, 8: 14142. (SCI)

2.      Chen MM^#, Fontaine MC^#*, Chehida YB^#, Zheng JS*, Labbé F, Mei ZG, Hao YJ, Wang KX, Wu M, Zhao QZ, Wang D*. 2017. Genetic footprint of population fragmentation and contemporary collapse in a freshwater cetacean. Scientific Reports, 7: 14449. (SCI)

3.      Wan XL, Zheng JS*, Li WX, Zeng XY, Yang JW, Hao YJ, Wang D. 2017. Parasitic infections in the East Asian finless porpoise Neophocaena asiaeorientalis sunameri living off Chinese Yellow/Bohai Sea coast. Diseases of Aquatic Organisms, 125(1): 63-71. (SCI)

4.      Stewart K*, Ma HJ, Zheng JS, Zhao JF. 2017. Using environmental DNA to assess population-wide spatiotemporal reserve use. Conservation Biology, 31(5): 1173-1182. (SCI)

5.      Chen MM, Zheng Y, Hao YJ, Mei ZG, Wang KX, Zhao QZ, Zheng JS*, Wang D*. 2016. Parentage-based group composition and dispersal pattern studies of the Yangtze finless porpoise population in Poyang Lake. International Journal of Molecular Sciences, 17: 1268. (SCI)

6.      Wan XL, McLaughlin RW, Zhou JY, Hao YJ, Zheng JS*, Wang D*. 2016. Isolation of culturable aerobic bacteria and evidence of Kerstersia gyiorum from the blowhole of captive Yangtze finless porpoises. Antonie van Leeuwenhoek Journal of Microbiology, 109(8): 1167-1175. (SCI)

7.      Wan XL, Ruan R, McLaughlin RW, Hao YJ, Zheng JS*, Wang D*. 2016. Fecal bacterial composition of the endangered Yangtze finless porpoises living under captive and semi-natural conditions. Current Microbiology, 72: 306-314. (SCI)

8.      Ruan R, Ruan J, Wan XL, Zheng Y, Chen MM, Zheng JS*, Wang D*. 2016. Organization and characteristics of the major histocompatibility complex classⅡ region in the Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis). Scientific Reports, 6: 22471. (SCI)

9.      Ruan R, Wan XL, Zheng Y, Zheng JS*, Wang D*. 2016. Assembly and characterization of the MHC class I region of the Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis). Immunogenetics, 68: 77-82. (SCI)

10.  Ruan R, Guo AH, Hao YJ, Zheng JS*, Wang D*. 2015. De Novo assembly and characterization of narrow-ridged finless porpoise renal transcriptome and identification of candidate genes involved in osmoregulation. International Journal of Molecular Sciences, 16: 2220-2238. (SCI)

11.  Chen MM, Zheng JS*, Wu M, Ruan R, Zhao QZ, Wang D*. 2014. Genetic diversity and population structure of the critically endangered Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis) as revealed by mitochondrial and microsatellite DNA. International Journal of Molecular Sciences, 15: 11307-11323. (SCI)

12.  Feng P^#, Zheng JS^#, Rossiter S, Wang D, Zhao HB*. 2014. Massive losses of taste receptor genes in toothed and baleen whales. Genome Biology and Evolution, 6: 1254-1265. (SCI)

13.  McLaughlin RW, Zheng JS*, Ruan R, Wang CQ, Zhao QZ, Wang D. 2013. Isolation of Robinsoniella peoriensis from the fecal material of the endangered Yangtze finless porpoise, Neophocaena asiaeorientalis asiaeorientalis. Anaerobe, 20: 79-81. (SCI)

14.  McLaughlin RW, Chen MM, Zheng JS*, Zhao QZ, Wang D. 2012. Analysis of the bacterial diversity in the fecal material of the endangered Yangtze finless porpoise. Molecular Biology Reports, 39(5): 5669-5676. (SCI)

15.  McLaughlin RW, Zheng JS*, Chen MM, Zhao QZ, Wang D. 2011. Detection of Helicobacter in the fecal material of the endangered Yangtze finless porpoise, Neophocaena phocaenoides asiaeorientalis. Diseases of Aquatic Organisms, 95: 241-245. (SCI)

16.  Du HJ, Zheng JS*, Wu M, Zhao QZ, Wang D*. 2010. High MHC DQB variation and asymmetric allelic distribution in the endangered Yangtze finless porpoise Neophocaena phocaenoides asiaeorentalis. Biochemical Genetics, 48(5-6): 433-449. (SCI)

17.  Zheng JS, Liao XL, Tong JG, Du HJ, Milinkovitch MC, Wang D*. 2008. Development and characterization of polymorphic microsatellite loci in the endangered Yangtze finless porpoise (Neophocaena phocaenoides asiaeorientalis). Conservation Genetics, 9: 1007-1009. (SCI)

18.  Zheng JS, Xia JH, He SP, Wang D*. 2005. Population genetic structure of the Yangtze finless porpoise Neophocaena phocaenoides asiaeorientalis: implications for management and conservation. Biochemical Genetics, 43: 307-320. (SCI)

19.  陈敏敏, 郑劲松*, 龚成, 赵庆中, 王丁*. 2014. 天鹅洲迁地保护江豚种群近亲繁殖状况评估. 动物学杂志, 49(3): 305-316. (CSCD)

20.  周钊, 郑劲松*, 陈敏敏, 赵庆中, 王丁*. 2012. 天鹅洲迁地保护江豚群体的遗传评估与发展预测. 水生生物学报, 36(3): 403-411. (CSCD)

（1） First case of Shewanella indica isolated from a Bryde’s whale (Balaenoptera edeni) stranded in Beihai, China., Antonie van Leeuwenhoek, 2021, 通讯作者
（2） Searching for putative virulence factors in the genome of Shewanella indica and Shewanella algae., Archives of Microbiology, 2021, 通讯作者
（3） The intestinal microbiome of an Indo-Pacifific humpback dolphin (Sousa chinensis) stranded near the Pearl River Estuary, China., Integrative Zoology, 2021, 通讯作者
（4） Temporal variation in the diet of Yangtze finless porpoise calls for conservation of semi-migratory fish., Freshwater Biology, 2021, 第 5 作者
（5） Thresholds of population persistence for the Yangtze finless porpoise: implications for conservation managements., Integrative Zoology, 2021, 第 5 作者
（6） Comparing fish prey diversity for a critically endangered aquatic mammal in a reserve and the wild using eDNA metabarcoding., Scientific Reports, 2020, 第 4 作者
（7） 一头搁浅瑞氏海豚的病理解剖和死因分析., 兽类学报, 2020, 通讯作者
（8） First evaluation of legacy persistent organic pollutant contamination status of stranded Yangtze finless porpoises in the Yangtze River Basin, China., Science of the Total Environment, 2020, 通讯作者
（9） Immune responses of the critically endangered Yangtze finless porpoises (Neophocaena asiaeorientalis ssp. asiaeorientalis) to escalating anthropogenic stressors in the wild and semi-natural environment., Frontiers in Physiology, 2020, 通讯作者
（10） Putative virulence factors of Plesiomonas shigelloides., Antonie van Leeuwenhoek, 2019, 通讯作者
（11） Occurrence and feeding activities of Eden’s whale, Balaenoptera edeni, in the northern Beibu Gulf, China., Marine Mammal Science, 2019, 第 6 作者
（12） A preliminary study on diet of the Yangtze finless porpoise using next-generation sequencing techniques., Marine Mammal Science, 2019, 第 4 作者
（13） Genome sequence of the freshwater cetacean, the Yangtze finless porpoise., Genes, 2018, 第 6 作者
（14） Microbial communities in different regions of the gastrointestinal tract in East Asian finless porpoises (Neophocaena asiaeorientalis sunameri)., Scientific Reports, 2018, 通讯作者
（15） Microplastics in the intestinal tracts of East Asian finless porpoises (Neophocaena asiaeorientalis sunameri) from Yellow Sea and Bohai Sea of China., Marine Pollution Bulletin, 2018, 第 6 作者
（16） Physiological consequences of biologic state and habitat dynamics on the critically endangered Yangtze finless porpoises (Neophocaena asiaeorientalis ssp. asiaeorientalis) dwelling in the wild and semi-natural environment., Conservation Physiology, 2018, 第 4 作者
（17） Parasitic infections in the East Asian finless porpoise Neophocaena asiaeorientalis sunameri living off Chinese Yellow/Bohai Sea coast., Diseases of Aquatic Organisms, 2017, 通讯作者
（18） Beluga whale pVHL enhances HIF-2α activity via inducing HIF-2α proteasomal degradation under hypoxia., Oncotarget, 2017, 第 5 作者
（19） Using environmental DNA to assess population-wide spatiotemporal reserve use., Conservation Biology, 2017, 第 3 作者
（20） Genetic footprint of population fragmentation and contemporary collapse in a freshwater cetacean., Scientific Reports, 2017, 通讯作者
（21） Hematologic and biochemical differences between two free ranging Yangtze finless porpoise population: the implications of habitat impact., PLOS ONE, 2017, 第 4 作者
（22） Saving the Yangtze finless porpoise: Time is rapidly running out., Biological Conservation, 2017, 第 4 作者
（23） Isolation of culturable aerobic bacteria and evidence of Kerstersia gyiorum from the blowhole of captive Yangtze finless porpoises., Antonie van Leeuwenhoek Journal of Microbiology, 2016, 通讯作者
（24） Assembly and characterization of the MHC class I region of the Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis), Immunogenetics, 2016, 通讯作者
（25） Parentage-based group composition and dispersal pattern studies of the Yangtze finless porpoise population in Poyang Lake., International Journal of Molecular Sciences, 2016, 通讯作者
（26） Organization and characteristics of the major histocompatibility complex classⅡ region in the Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis)., Scientific Reports, 2016, 通讯作者
（27） Fecal bacterial composition of the endangered Yangtze finless porpoises living under captive and semi-natural conditions., Current Microbiology, 2016, 通讯作者
（28） Characterization, optimization, and validation of environmental DNA (eDNA) markers to detect an endangered aquatic mammal., Conservation Genetics Resources, 2016, 第 4 作者
（29） Characterization of the hypoxia-inducible factor 1 alpha gene in the sperm whale, beluga whale, and Yangtze finless porpoise., Marine Biology, 2015, 第 3 作者
（30） Physicochemical evolution and molecular adaptation of the cetacean osmoregulation-related gene UT-A2 and implications for functional studies., Scientific Reports, 2015, 第 4 作者
（31） De Novo assembly and characterization of narrow-ridged finless porpoise renal transcriptome and identification of candidate genes involved in osmoregulation., International Journal of Molecular Sciences, 2015, 通讯作者
（32） 海洋哺乳动物信息素嗅觉的分子进化., 中国科学: 生命科学, 2015, 第 3 作者
（33） Genetic diversity and population structure of the critically endangered Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis) as revealed by mitochondrial and microsatellite DNA., International Journal of Molecular Sciences, 2014, 通讯作者
（34） Massive losses of taste receptor genes in toothed and baleen whales., Genome Biology and Evolution, 2014, 第 2 作者
（35） 天鹅洲迁地保护江豚种群近亲繁殖状况评估, 动物学杂志, 2014, 通讯作者
（36） Isolation of Robinsoniella peoriensis from the fecal material of the endangered Yangtze finless porpoise, Neophocaena asiaeorientalis asiaeorientalis, Anaerobe, 2013, 通讯作者
（37） Analysis of the bacterial diversity in the fecal material of the endangered Yangtze finless porpoise, Molecular Biology Reports, 2012, 通讯作者
（38） 天鹅洲迁地保护江豚群体的遗传评估与发展预测, 水生生物学报, 2012, 通讯作者
（39） Evidence for positive selection on the leptin gene in Cetacea and Pinnipedia, Plos One, 2011, 通讯作者
（40） Detection of Helicobacter in the fecal material of the endangered Yangtze finless porpoise, Neophocaena phocaenoides asiaeorientalis, Diseases of Aquatic Organisms, 2011, 通讯作者
（41） High MHC DQB variation and asymmetric allelic distribution in the endangered Yangtze finless porpoise Neophocaena phocaenoides asiaeorentalis, Biochemical Genetics, 2010, 通讯作者
（42） 长江江豚MHC-DRB基因第二外显子的分离鉴定, 水生生物学报, 2009, 通讯作者
（43） 微卫星分型法应用于豢养繁殖长江江豚的父权鉴定, 现代生物医学进展, 2009, 通讯作者
（44） Development and characterization of polymorphic microsatellite loci in the endangered Yangtze finless porpoise (Neophocaena phocaenoides asiaeorientalis), Conservation Genetics, 2008, 第 1 作者
（45） 长江江豚微卫星DNA分离的初步研究, 水生生物学报, 2008, 第 1 作者
（46） Population genetic structure of the Yangtze finless porpoise Neophocaena phocaenoides asiaeorientalis: implications for management and conservation, Biochemical Genetics, 2005, 第 1 作者
（47） Parentage determination of an isolated Yangtze finless porpoise population in the Tian-e-Zhou baiji National Natural Reserve based on molecular data, Progress in Natural Science, 2005, 第 2 作者
（48） Ex situ conservation status of an endangered Yangtze finless porpoise population, as measured from microsatellites and mtDNA diversity, ICEs Journal of Marine Science, 2005, 第 2 作者
（49） 

   

（ 1 ） 长江江豚自然种群遗传多样性保护及家系遗传管理, 主持, 国家级, 2012-01--2016-12
（ 2 ） 天鹅洲保护区江豚的种群现状评估、行为学及栖息地选择研究, 主持, 研究所（学校）, 2014-04--2015-12
（ 3 ） 中华鲟子一代养殖群体的遗传谱系研究, 主持, 研究所（学校）, 2011-01--2015-12
（ 4 ） 长江江豚遗传资源的生态保护技术研究, 主持, 国家级, 2016-07--2020-12
（ 5 ） 长江江豚肠道微生物组的构成和多样性及其与水环境微生物的相关性研究, 主持, 部委级, 2017-01--2018-12
（ 6 ） 长江中游宜昌—湖口段（含洞庭湖和鄱阳湖）死亡江豚标本收集、死因分析及科研样品保存, 主持, 国家级, 2018-01--2018-12
（ 7 ） 濒危长江江豚的近交避免与配偶选择机制研究, 主持, 国家级, 2019-01--2022-12

（1）Development and management of ex situ populations of Yangtze finless porpoise   长江江豚保护进展及启示国际研讨会   2019-11-25

已指导学生

李佳  硕士研究生  085238-生物工程  

现指导学生

王仁勇  硕士研究生  071002-动物学  

孙晓冬  硕士研究生  071002-动物学  

何俊逸  硕士研究生  086000-生物与医药