基本信息
张跃斌  男    中国科学院大连化学物理研究所
电子邮件: zhangyb@dicp.ac.cn
通信地址: 辽宁省大连市沙河口区中山路457号
邮政编码:

招生信息

   
招生专业
070304-物理化学(含:化学物理)
招生方向
计算化学、计算生物学

教育背景

2005-09--2010-06   吉林大学 分子酶学与工程教育部重点实验室   博士
2001-09--2005-06   湖北大学 生命科学院   学士

工作经历

   
工作简历
2016-07~现在, 中国科学院大连化学物理研究所, 副研究员
2013-07~2016-06,中国科学院大连化学物理研究所, 助理研究员
2010-10~2013-04,吉林大学 超分子结构与材料国家重点实验室, 博士后

出版信息

   
发表论文
[1] Li, Yanjing, Zhao, Lijie, Zhang, Yuebin, Wu, Ping, Xu, Ying, Mencius, Jun, Zheng, Yongxin, Wang, Xiaoman, Xu, Wancheng, Huang, Naizhe, Ye, Xianwen, Lei, Ming, Shi, Pan, Tian, Changlin, Peng, Chao, Li, Guohui, Liu, Zhijun, Quan, Shu, Chen, Yong. Structural basis for product specificities of MLL family methyltransferases. MOLECULAR CELL[J]. 2022, 82(20): 3810-+, http://dx.doi.org/10.1016/j.molcel.2022.08.022.
[2] Wang, WenJin, Mu, Xia, Tan, CaiPing, Wang, YuJian, Zhang, Yuebin, Li, Guohui, Mao, ZongWan. Induction and Monitoring of DNA Phase Separation in Living Cells by a Light-Switching Ruthenium Complex. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY[J]. 2021, 143(30): 11370-11381, http://dx.doi.org/10.1021/jacs.1c01424.
[3] Chen, Cong, Tan, Ming, Wu, Zhenfang, Zhang, Yuebin, He, Fanyang, Lu, Yanjia, Li, Shaobai, Cao, Mi, Li, Guohui, Wu, Jian, Cheng, Hong, Lei, Ming. Structural and functional insights into R-loop prevention and mRNA export by budding yeast THO-Sub2 complex. SCIENCE BULLETIN[J]. 2021, 66(23): 2347-2352, http://dx.doi.org/10.1016/j.scib.2021.08.004.
[4] Sensen Zhang, Jun Zhou, Yuebin Zhang, Tianya Liu, Perrine Friedel, Wei Zhuo, Suma Somasekharan, Kasturi Roy, Laixing Zhang, Yang Liu, Xianbin Meng, Haiteng Deng, Wenwen Zeng, Guohui Li, Biff Forbush, Maojun Yang. The structural basis of function and regulation of neuronal cotransporters NKCC1 and KCC2. COMMUNICATIONS BIOLOGY[J]. 2021, 4(1): https://www.webofscience.com/wos/woscc/full-record/WOS:000621041200001.
[5] Tao, Xuan, Zhang, Lu, Du, Liubing, Liao, Ruyan, Cai, Huiling, Lu, Kai, Zhao, Zhennan, Xie, Yanxuan, Wang, PeiHui, Pan, JiAn, Zhang, Yuebin, Li, Guohui, Dai, Jun, Mao, ZongWan, Xia, Wei. Allosteric inhibition of SARS-CoV-2 3CL protease by colloidal bismuth subcitrate. CHEMICAL SCIENCE[J]. 2021, 12(42): 14098-14102, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000705313100001.
[6] Wang, Anhui, Zhang, Yuebin, Chu, Huiying, Liao, Chenyi, Zhang, Zhichao, Li, Guohui. Higher Accuracy Achieved for Protein-Ligand Binding Pose Prediction by Elastic Network Model-Based Ensemble Docking. JOURNAL OF CHEMICAL INFORMATION AND MODELING[J]. 2020, 60(6): 2939-2950, https://www.webofscience.com/wos/woscc/full-record/WOS:000543717300028.
[7] Zhou, Haichuan, Zhang, Yuebin, Li, Tang, Tan, Haidong, Li, Guohui, Yin, Heng. Distinct Interaction of Lytic Polysaccharide Monooxygenase with Cellulose Revealed by Computational and Biochemical Studies. JOURNAL OF PHYSICAL CHEMISTRY LETTERS[J]. 2020, 11(10): 3987-3992, https://www.webofscience.com/wos/woscc/full-record/WOS:000537432500035.
[8] Zheng, Xiangdong, Fu, Ziao, Su, Deyuan, Zhang, Yuebin, Li, Minghui, Pan, Yaping, Li, Huan, Li, Shufang, Grassucci, Robert A, Ren, Zhenning, Hu, Zhengshan, Li, Xueming, Zhou, Ming, Li, Guohui, Frank, Joachim, Yang, Jian. Mechanism of ligand activation of a eukaryotic cyclic nucleotide-gated channel. NATURE STRUCTURAL & MOLECULAR BIOLOGY[J]. 2020, 27(7): 625-+, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7354226/.
[9] Liu, Lin, Zhou, Yong, Qu, Mingbo, Qiu, Yu, Guo, Xingming, Zhang, Yuebin, Liu, Tian, Yang, Jun, Yang, Qing. Structural and biochemical insights into the catalytic mechanisms of two insect chitin deacetylases of the carbohydrate esterase 4 family. JOURNAL OF BIOLOGICAL CHEMISTRY[J]. 2019, 294(15): 5774-5783, http://dx.doi.org/10.1074/jbc.RA119.007597.
[10] Yuebin Zhang, Xiangda Peng, Hong Ren, Huiying Chu, Yan Li, Guohui Li. Cholesterol modulating the orientation of His17 in hepatitis C virus p7 (Sa) viroporin - A molecular dynamic simulation study. 中国化学快报:英文版[J]. 2018, 29(5): 719-723, http://lib.cqvip.com/Qikan/Article/Detail?id=675219428.
[11] Lan, Pengfei, Tan, Ming, Zhang, Yuebin, Niu, Shuangshuang, Chen, Juan, Shi, Shaohua, Qiu, Shuwan, Wang, Xuejuan, Peng, Xiangda, Cai, Gang, Cheng, Hong, Wu, Jian, Li, Guohui, Lei, Ming. Structural insight into precursor tRNA processing by yeast ribonuclease P. SCIENCE[J]. 2018, 362(6415): 657-+, http://202.127.25.143/handle/331003/3478.
[12] Peng, Xiangda, Zhang, Yuebin, Li, Yan, Liu, QingLong, Chu, Huiying, Zhang, Dinglin, Li, Guohui. Integrating Multiple Accelerated Molecular Dynamics To Improve Accuracy of Free Energy Calculations. JOURNAL OF CHEMICAL THEORY AND COMPUTATION[J]. 2018, 14(3): 1216-1227, http://cas-ir.dicp.ac.cn/handle/321008/168872.
[13] Liu, Xin, Liu, Tengfei, Zhang, Yuebin, Xin, Fengjiao, Mi, Shuofu, Wen, Boting, Gu, Tianyi, Shi, Xinyuan, Wang, Fengzhong, Sun, Lichao. Structural Insights into the Thermophilic Adaption Mechanism of Endo-1,4-beta-Xylanase from Caldicellulosiruptor owensensis. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY[J]. 2018, 66(1): 187-193, http://cas-ir.dicp.ac.cn/handle/321008/168552.
[14] Wang, ShiHui, Wu, ChenYu, Zhang, YueBin, Zhong, QingLu, Sun, Hao, Cao, WenPeng, Ge, GaoXiang, Li, GuoHui, Zhang, X Frank, Chen, JianFeng. Integrin alpha 4 beta 7 switches its ligand specificity via distinct conformer-specific activation. JOURNAL OF CELL BIOLOGY[J]. 2018, 217(8): 2799-2812, http://202.127.25.143/handle/331003/3428.
[15] Chu, Huiying, Peng, Xiangda, Li, Yan, Zhang, Yuebin, Min, Hanyi, Li, Guohui. Polarizable atomic multipole-based force field for DOPC and POPE membrane lipids. MOLECULAR PHYSICS[J]. 2018, 116(7-8): 1037-1050, http://cas-ir.dicp.ac.cn/handle/321008/169026.
[16] Zhang, Yuebin, Peng, Xiangda, Ren, Hong, Chu, Huiying, Li, Yan, Li, Guohui. Cholesterol modulating the orientation of His17 in hepatitis C virus p7 (5a) viroporin - A molecular dynamic simulation study. CHINESE CHEMICAL LETTERS[J]. 2018, 29(5): 719-723, http://dx.doi.org/10.1016/j.cclet.2017.09.053.
[17] Pan, Yangang, Zhang, Yuebin, Gongpan, Pianchou, Zhang, Qingrong, Huang, Siteng, Wang, Bin, Xu, Bingqian, Shan, Yuping, Xiong, Wenyong, Li, Guohui, Wang, Hongda. Single glucose molecule transport process revealed by force tracing and molecular dynamics simulations. NANOSCALE HORIZONS[J]. 2018, 3(5): [18] Cao LiaoRan, Zhang ChunYu, Zhang DingLin, Chu HuiYing, Zhang YueBin, Li GuoHui. Recent Developments in Using Molecular Dynamics Simulation Techniques to Study Biomolecules. ACTA PHYSICO-CHIMICA SINICA[J]. 2017, 33(7): 1354-1365, [19] 曹了然, 张春煜, 张鼎林, 楚慧郢, 张跃斌, 李国辉. 分子动力学模拟技术在生物分子研究中的进展(英文). 物理化学学报. 2017, http://kns.cnki.net/KCMS/detail/detail.aspx?QueryID=0&CurRec=1&recid=&FileName=WLHX201707012&DbName=CJFDLAST2017&DbCode=CJFQ&yx=&pr=&URLID=&bsm=QK0101;.
[20] 曹了然, 张春煜, 张鼎林, 楚慧郢, 张跃斌, 李国辉. 分子动力学模拟技术在生物分子研究中的进展. 物理化学学报[J]. 2017, 33(7): 1354-1365, http://lib.cqvip.com/Qikan/Article/Detail?id=672457621.
[21] Huiying Chu, Xiangda Peng, Yan Li, Yuebin Zhang, Guohui Li. A Polarizable Atomic Multipole-Based Force Field for Molecular Dynamics Simulations of Anionic Lipids. MOLECULES[J]. 2017, 23(1): https://doaj.org/article/5474bef5d01d4b488313341500e87b85.
[22] Cao Liaoran, Zhang Chunyu, Zhang Dinglin, Chu Huiying, Zhang Yuebin, Li Guohui. 分子动力学模拟技术在生物分子研究中的进展. 物理化学学报[J]. 2017, 33(7): 1354-1365, http://lib.cqvip.com/Qikan/Article/Detail?id=672457621.
[23] Wang, Y, Hong, X, Wang, J, Yin, Y, Zhang, Y, Zhou, Y, Piao, HI, Liang, Z, Zhang, L, Li, G, Xu, G, Kwiatkowski, D J, Liu, Y. Inhibition of MAPK pathway is essential for suppressing Rheb-Y35N driven tumor growth. ONCOGENE[J]. 2017, 36(6): 756-765, http://cas-ir.dicp.ac.cn/handle/321008/169590.
[24] Zhang, Lijuan, Zhang, Yuebin, Cheng, Jie, Wang, Lei, Wang, Xingya, Zhang, Meng, Gao, Yi, Hu, Jun, Zhang, Xuehua, Lu, Junhong, Li, Guohui, Tai, Renzhong, Fang, Haiping, 吕军鸿. Inert Gas Deactivates Protein Activity by Aggregation. SCIENTIFIC REPORTS[J]. 2017, 7(1): http://cas-ir.dicp.ac.cn/handle/321008/149979.
[25] Li, Guohui, Peng, XiangDa, Chu, HuiYing Chu, Zhang, YueBin. Polarizable force field development for cellular membrane lipids and their applications. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY[J]. 2017, 254: http://cas-ir.dicp.ac.cn/handle/321008/169086.
[26] Zhang, Yong, Feng, Jiao, Cui, Lili, Zhang, Yuebin, Li, Wenzhao, Li, Chunlei, Shi, Nianqiu, Chen, Yan, Kong, Wei. Investigation Into Efficiency of a Novel Glycol Chitosan-Bestatin Conjugate to Protect Thymopoietin Oligopeptides From Enzymatic Degradation. JOURNAL OF PHARMACEUTICAL SCIENCES[J]. 2016, 105(2): 828-837, http://cas-ir.dicp.ac.cn/handle/321008/170012.
[27] Peng, Xiangda, Zhang, Yuebin, Chu, Huiying, Li, Yan, Zhang, Dinglin, Cao, Liaoran, Li, Guohui. Accurate Evaluation of Ion Conductivity of the Gramicidin A Channel Using a Polarizable Force Field without Any Corrections. JOURNAL OF CHEMICAL THEORY AND COMPUTATION[J]. 2016, 12(6): 2973-2982, http://cas-ir.dicp.ac.cn/handle/321008/170522.
[28] Peng, Xiangda, Zhang, Yuebin, Chu, Huiying, Li, Guohui. Free Energy Simulations with the AMOEBA Polarizable Force Field and Metadynamics on GPU Platform. JOURNAL OF COMPUTATIONAL CHEMISTRY[J]. 2016, 37(6): 614-622, http://cas-ir.dicp.ac.cn/handle/321008/171252.
[29] Xu, Haoran, Zhang, Yuebin, Chen, Lei, Li, Yan, Li, Chen, Liu, Li, Ogura, Takashi, Kitagawa, Teizo, Li, Zhengqiang. Entry of water into the distal heme pocket of soluble guanylate cyclase beta 1 H-NOX domain alters the ligated CO structure: a resonance Raman and in silico simulation study. RSC ADVANCES[J]. 2016, 6(49): 43707-43714, http://cas-ir.dicp.ac.cn/handle/321008/170916.
[30] Li, Yanjing, Han, Jianming, Zhang, Yuebin, Cao, Fang, Liu, Zhijun, Li, Shuai, Wu, Jian, Hu, Chunyi, Wang, Yan, Shuai, Jin, Chen, Juan, Cao, Liaoran, Li, Dangsheng, Shi, Pan, Tian, Changlin, Zhang, Jian, Dou, Yali, Li, Guohui, Chen, Yong, Lei, Ming. Structural basis for activity regulation of MLL family methyltransferases. NATURE[J]. 2016, 530(7591): 447-+, http://dx.doi.org/10.1038/nature16952.
[31] Zhang, Yuebin, Niu, Huiyan, Li, Yan, Chu, Huiying, Shen, Hujun, Zhang, Dinglin, Li, Guohui. Mechanistic insight into the functional transition of the enzyme guanylate kinase induced by a single mutation. SCIENTIFIC REPORTS[J]. 2015, 5: http://dx.doi.org/10.1038/srep08405.
[32] Zhang, Yuebin, Liu, Li, Wu, Lei, Li, Shuai, Li, Fei, Li, Zhengqiang. Theoretical investigation on the diatomic ligand migration process and ligand binding properties in non-O-2-binding H-NOX domain. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS[J]. 2013, 81(8): 1363-1376, https://www.webofscience.com/wos/woscc/full-record/WOS:000329220400007.
[33] Li, Wei, Zhang, Yubin, Xu, Haoran, Wu, Lei, Cao, Yufeng, Zhao, Haifeng, Li, Zhengqiang. pH-induced quaternary assembly of Vitreoscilla hemoglobin: The monomer exhibits better peroxidase activity. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS[J]. 2013, 1834(10): 2124-2132, http://dx.doi.org/10.1016/j.bbapap.2013.07.005.
[34] Yuebin Zhang, Ming Lu, Yingkun Cheng, Zhengqiang Li. H-NOX domains display different tunnel systems for ligand migration. JOURNAL OF MOLECULAR GRAPHICS AND MODELLING. 2010, 28(8): 814-819, http://dx.doi.org/10.1016/j.jmgm.2010.02.007.
发表著作
(1) Computer Simulations to Explore Membrane Organization and Transport, Springer, 2017-11, 第 2 作者

科研活动

   
科研项目
( 1 ) 基于多尺度分子动力学模拟和高精度可极化力场研究PIP2对TRP通道调控微观分子机理, 主持, 国家级, 2018-01--2020-12