1. 物种多样性格局的形成机制研究

全球的物种多样性呈现出不均衡分布的格局，东亚物种多样性明显高于北半球的其他地区（尤其是北美和欧洲），是什么原因导致了这种分布格局的形成一直是生物学家关注的重要课题。物种形成净速率和起源时间是物种多样性形成的最直接原因。我们可利用不同植物（或动物）类群在全球不平衡的物种多样性格局，结合其系统发育关系和分化时间，估算出不同地区的物种形成净速率和起源时间，进而推算物种多样性格局的形成机制。此外，在东亚内部，可进一步将东亚地区细分（如依据区系、纬度、经度、海拔等），结合多个类群（植物类群）的系统发育关系，及其的重要性状（如花的结构、种子形态等）和生态因子（如温度、降水、土壤类型等）等性状，开展宏观的比较系统发育学研究，探讨东亚物种多样性形成机制。

2. 植物系统发育与进化研究

随着高通量测序和生物信息技术的快速发展，利用高通量数据手段开展植物系统发育和进化研究属于研究热点。我们正利用转录组测序（RNA-seq）、基因组浅层测序技术（Genome Skimming）、同源基因杂交测序法（Target enrichment combined with genome skimming: Hyb-Seq）获取大量直系同源核基因或细胞器基因组信息，并结合形态、细胞学、生境因子等数据探讨植物类群（如报春花科）的系统发育关系和物种形成的地理模式。另外，以特定植物类群（如植物复合体）为例，利用简化基因组测序（RAD-seq）或转录组测序开展群体遗传学方面的研究，并结合植物地理学和古生物、古地理和古气候的资料，探讨其起源、演化和分布历史，揭示物种间的进化规律和机制。

3. 植物DNA条形码研究

DNA条形码是采用标准的DNA片段对物种进行有效鉴定的技术。在植物中，由于存在较为频繁的杂交和基因渐渗，该技术在植物中可能存在较多问题。当前，我们正利用基因组浅层测序技术（Genome Skimming）等高通量测序方法构建超级条形码（细胞器基因组及核糖体基因），以解决近缘类群的物种鉴定问题，进而发现其中的生物学问题。除DNA条形码的选择标准和鉴定能力的评估外，我们试图探讨如何将DNA条形码技术有效地应用于种下品系的鉴定中（如鉴定重要中药材的道地性）。

热切期待有兴趣的同学加入我们团队，共同进步！

   

071001-植物学

系统与进化植物学
宏观进化生态学

2003-09--2008-07   华南植物园   博士毕业
1999-09--2003-07   南京林业大学   学士毕业
1996-09--1999-07   海盐中学   高中毕业

   

2015-10~2016-10,亚利桑那大学, 访问学者
2013-08~现在, 华南植物园, 副研究员
2008-07~2013-07,华南植物园, 助理研究员

   

[1] Yan, HaiFei, Li, JiaXiang, Liu, TongJian, Hao, Gang. Lysimachia fenghwaiana (Primulaceae), a new species from Hunan Province, China. PHYTOKEYS[J]. 2023, 220(220): 75-82, http://dx.doi.org/10.3897/phytokeys.220.99556.
[2] Nan Zhao, Suhyeon Park, YuQu Zhang, ZeLong Nie, XueJun Ge, Sangtae Kim, HaiFei Yan. Fingerprints of climatic changes through the late Cenozoic in southern Asian flora: Magnolia section Michelia (Magnoliaceae). ANNALS OF BOTANY. 2022, 130(1): 41-52, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9295916/.
[3] Xiao, TianWen, Yan, HaiFei, Ge, XueJun. Plastid phylogenomics of tribe Perseeae (Lauraceae) yields insights into the evolution of East Asian subtropical evergreen broad-leaved forests. BMC PLANT BIOLOGY[J]. 2022, 22(1): https://doaj.org/article/8a1a446ab76e4f45a68f7671e30601cf.
[4] Yan, HaiFei, Huang, Ya, Zhang, HongJing, Yi, SiRong. Lysimachia coriacea (Primulaceae, Myrsinoideae), a new species from Chongqing, China. PHYTOKEYS[J]. 2022, 215(215): 87-94, http://dx.doi.org/10.3897/phytokeys.215.91488.
[5] Fu, Ning, Ji, Meiyuan, Rouard, Mathieu, Yan, HaiFei, Ge, XueJun. Comparative plastome analysis of Musaceae and new insights into phylogenetic relationships. BMC GENOMICS[J]. 2022, 23(1): http://dx.doi.org/10.1186/s12864-022-08454-3.
[6] Wei, Lei, Liu, TongJian, Hao, Gang, Ge, XueJun, Yan, HaiFei. Comparative analyses of three complete Primula mitogenomes with insights into mitogenome size variation in Ericales. BMC GENOMICS[J]. 2022, 23(1): http://dx.doi.org/10.1186/s12864-022-08983-x.
[7] Zhang, CaiYun, Yan, HaiFei, Wang, FengYing. Characterization of the complete plastid genome of Lysimachia christinae Hance (Primulaceae). MITOCHONDRIAL DNA PART B-RESOURCES[J]. 2021, 6(1): 268-270, http://dx.doi.org/10.1080/23802359.2020.1863873.
[8] Li, Lin, Chung, ShihWen, Li, Bo, Zeng, SongJun, Yan, HaiFei, Li, ShiJin. New insight into the molecular phylogeny of the genus Liparis s.l. (Orchidaceae: Malaxideae) with a new generic segregate: Blepharoglossum. PLANT SYSTEMATICS AND EVOLUTION[J]. 2020, 306(3): https://www.webofscience.com/wos/woscc/full-record/WOS:000531581000001.
[9] Xiao, TianWen, Xu, Yong, Jin, Lu, Liu, TongJian, Yan, HaiFei, Ge, XueJun. Conflicting phylogenetic signals in plastomes of the tribe Laureae (Lauraceae). PEERJ[J]. 2020, 8: https://doaj.org/article/32a4f201b1b14d8290c2eb46b389ee13.
[10] Yan, Xiaokai, Yan, Haifei, Hao, Gang. The complete chloroplast genome of Ardisia crenata Sims (Primulaceae): a popular ornamental plant in China. MITOCHONDRIAL DNA PART B-RESOURCES[J]. 2019, 4(1): 1790-1791, https://www.webofscience.com/wos/woscc/full-record/WOS:000467822300001.
[11] Li, CuiTian, Pei, NanCai, Yin, Yi, Yan, HaiFei, Shi, MiaoMiao, Huang, HuiRun. The complete chloroplast genome of a true mangrove Sonneratia apetala and its phylogenetic implications. MITOCHONDRIAL DNA PART B-RESOURCES[J]. 2019, 4(1): 160-161, http://dx.doi.org/10.1080/23802359.2018.1544863.
[12] Xu, Yong, Xiao, TianWen, Zhao, Nan, Li, Ting, Liu, TongJian, Yan, HaiFei. Characterization of the complete plastid genome of an endangered species Fortunearia sinensis (Hamamelidaceae). MITOCHONDRIAL DNA PART B-RESOURCES[J]. 2019, 4(1): 1432-1434, [13] Caiyun Zhang, Tongjian Liu, Xun Yuan, Huirun Huang, Gang Yao, Xiaolu Mo, Xue Xue, Haifei Yan. The plastid genome and its implications in barcoding specific-chemotypes of the medicinal herb Pogostemon cablin in China.. PLOS ONE[J]. 2019, 14(4): https://doaj.org/article/d11206f23d754b10b476252bece1e44b.
[14] Li, Ting, Song, Feng, Yuan, Xun, Liu, Tongjian, Yan, Haifei. Characterization of the plastid genome of the monotypic genus Bryocarpum (Primulaceae). MITOCHONDRIAL DNA PART B-RESOURCES[J]. 2019, 4(2): 3122-3123, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000486993800001.
[15] Zhao, Nan, Liu, Lu, Zhang, YuQu, Yan, HaiFei, Liu, TongJian, Huang, HuiRun. The complete plastid genome of Magnolia omeiensis (Magnoliaceae). MITOCHONDRIAL DNA PART B-RESOURCES[J]. 2019, 4(1): 1837-1838, https://www.webofscience.com/wos/woscc/full-record/WOS:000472120900001.
[16] Yong Xu, TianWen Xiao, Nan Zhao, Ting Li, TongJian Liu, HaiFei Yan. Characterization of the complete plastid genome of an endangered species Fortunearia sinensis (Hamamelidaceae). MITOCHONDRIAL DNA PART B. 2019, [17] Li, CuiTian, Guo, Pu, Huang, HuiRun, Pei, NanCai, Shi, MiaoMiao, Yan, HaiFei. The complete chloroplast genome of Rhizophora stylosa and its phylogenetic implications. MITOCHONDRIAL DNA PART B-RESOURCES[J]. 2019, 4(1): 374-375, http://dx.doi.org/10.1080/23802359.2018.1547167.
[18] 颜海飞. Chloroplast genomes and comparative analyses among thirteen taxa within Myrsinaceae s.str. clade (Myrsinoideae, Primulaceae). International Journal of Molecular Sciences. International Journal of Molecular Sciences. 2019, [19] Li, Lin, Chung, ShihWen, Li, Bo, Zeng, SongJun, Yan, HaiFei, Li, ShiJin. Liparis napoensis (Orchidaceae), a new species from Guangxi, China. PHYTOKEYS[J]. 2019, 119(119): 31-37, https://www.webofscience.com/wos/woscc/full-record/WOS:000461341000003.
[20] Yan, HaiFei, Zhang, CaiYun, Anderberg, Arne A, Hao, Gang, Ge, XueJun, Wiens, John J. What explains high plant richness in East Asia? Time and diversification in the tribe Lysimachieae (Primulaceae). NEW PHYTOLOGIST[J]. 2018, 219(1): 436-448, http://dx.doi.org/10.1111/nph.15144.
[21] 颜海飞. 植物DNA条形码研究进展及在中草药鉴定领域的应用. 中草药. 2017, [22] Zhang, CaiYun, Liu, TongJian, Yan, HaiFei, Ge, XueJun, Hao, Gang. The complete chloroplast genome of a rare candelabra primrose Primula stenodonta (Primulaceae). CONSERVATION GENETICS RESOURCES[J]. 2017, 9(1): 123-125, https://www.webofscience.com/wos/woscc/full-record/WOS:000397936400030.
[23] Yan, HaiFei, Xu, Yuan, Zhu, ZhengMing, Hu, ChiMing, Hao, Gang. Lysimachia sinopilosa (Primulaceae), a new species from Yunnan, China. ANNALES BOTANICI FENNICI[J]. 2017, 54(1-3): 45-48, https://www.webofscience.com/wos/woscc/full-record/WOS:000402048600008.
[24] 张彩云, 颜海飞, 黄珊珊. DNA条形码技术在中药鉴定中的应用进展. 中草药[J]. 2017, 48(11): 2306-2312, http://210.77.82.179/handle/2SCSIERX/2041.
[25] Yao, Gang, Drew, Bryan T, Yi, TingShuang, Yan, HaiFei, Yuan, YongMing, Ge, XueJun. Phylogenetic relationships, character evolution and biogeographic diversification of Pogostemon s.l. (Lamiaceae). MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2016, 98: 184-200, http://dx.doi.org/10.1016/j.ympev.2016.01.020.
[26] Liu, TongJian, Zhang, CaiYun, Yan, HaiFei, Zhang, Lu, Ge, XueJun, Hao, Gang. Complete plastid genome sequence of Primula sinensis (Primulaceae): structure comparison, sequence variation and evidence for accD transfer to nucleus. PEERJ[J]. 2016, 4: https://doaj.org/article/10fb1d4693ce4e3c93a1b745bda08cc4.
[27] Liu, YunJiao, Zhang, CaiYun, Hao, Gang, Ge, XueJun, Yan, HaiFei. Characterization of Novel Microsatellite Loci for Primula poissonii (Primulaceae) Using High-Throughput Sequencing Technology. MOLECULES[J]. 2016, 21(5): https://doaj.org/article/f6bea97590f344839602a4e3cef5c2eb.
[28] Liu, Juan, Yan, HaiFei, Ge, XueJun. The Use of DNA Barcoding on Recently Diverged Species in the Genus Gentiana (Gentianaceae) in China. PLOS ONE[J]. 2016, 11(4): http://dx.doi.org/10.1371/journal.pone.0153008.
[29] Yan, HaiFei, Liu, YunJiao, Xie, XiuFeng, Zhang, CaiYun, Hu, ChiMing, Hao, Gang, Ge, XueJun. DNA Barcoding Evaluation and Its Taxonomic Implications in the Species-Rich Genus Primula L. in China. PLOS ONE[J]. 2015, 10(4): http://dx.doi.org/10.1371/journal.pone.0122903.
[30] Zhou, JianJun, Yu, XunLin, Deng, YunFei, Yan, HaiFei, Lin, ZheLi. Lysimachia huangsangensis (Primulaceae), a New Species from Hunan, China. PLOS ONE[J]. 2015, 10(7): http://dx.doi.org/10.1371/journal.pone.0132713.
[31] Liu, Juan, Yan, HaiFei, Newmaster, Steven G, Pei, Nancai, Ragupathy, Subramanyam, Ge, XueJun. The use of DNA barcoding as a tool for the conservation biogeography of subtropical forests in China. DIVERSITY AND DISTRIBUTIONS[J]. 2015, 21(2): 188-199, http://dx.doi.org/10.1111/ddi.12276.
[32] Lu Zhang, Wei Wu, HaiFei Yan, XueJun Ge. Phylotranscriptomic Analysis Based on Coalescence was Less Influenced by the Evolving Rates and the Number of Genes: A Case Study in Ericales. EVOLUTIONARY BIOINFORMATICS[J]. 2015, https://doaj.org/article/cb6388b8706d42589f3b6087f2280fce.
[33] Li, Lin, Ye, DePing, Niu, Miao, Yan, HaiFei, Wen, TieLong, Li, ShiJin. Thuniopsis: A New Orchid Genus and Phylogeny of the Tribe Arethuseae (Orchidaceae). PLOS ONE[J]. 2015, 10(8): https://doaj.org/article/3b34b4e8b5d84a108227217558f2b72c.
[34] Li, Lin, Yan, HaiFei, Niu, Miao, Tu, TieYao, Li, ShiJin, Xing, FuWu. Re-Establishment of the Genus Ania Lindl. (Orchidaceae). PLOS ONE[J]. 2014, 9(7): http://ir.scbg.ac.cn/handle/344003/18115.
[35] Zhang, Lu, Yan, HaiFei, Wu, Wei, Yu, Hui, Ge, XueJun. Comparative transcriptome analysis and marker development of two closely related Primrose species (Primula poissonii and Primula wilsonii). BMC GENOMICS[J]. 2013, 14(1): 329-329, http://dx.doi.org/10.1186/1471-2164-14-329.
[36] Li, Lin, Yan, Haifei. A Remarkable New Species of Liparis (Orchidaceae) from China and Its Phylogenetic Implications. PLOS ONE[J]. 2013, 8(11): http://ir.scbg.ac.cn/handle/344003/17856.
[37] Zhang, CaiYun, Wang, FengYing, Yan, HaiFei, Hao, Gang, Hu, ChiMing, Ge, XueJun. Testing DNA barcoding in closely related groups of Lysimachia L. (Myrsinaceae). MOLECULAR ECOLOGY RESOURCES[J]. 2012, 12(1): 98-108, http://dx.doi.org/10.1111/j.1755-0998.2011.03076.x.
[38] HaiFei Yan, CaiYun Zhang, FengYing Wang, ChiMing Hu, XueJun Ge, Gang Hao. Population Expanding with the Phalanx Model and Lineages Split by Environmental Heterogeneity: A Case Study of Primula obconica in Subtropical China. PLOS ONE[J]. 2012, 7(9): http://dx.doi.org/10.1371/journal.pone.0041315.
[39] Yan, HaiFei, Hao, Gang. Lysimachia huchimingii sp nov (Primulaceae) from China. NORDIC JOURNAL OF BOTANY[J]. 2012, 30(4): 443-445, http://dx.doi.org/10.1111/j.1756-1051.2012.01401.x.
[40] Li, DeZhu, Gao, LianMing, Li, HongTao, Wang, Hong, Ge, XueJun, Liu, JianQuan, Chen, ZhiDuan, Zhou, ShiLiang, Chen, ShiLin, Yang, JunBo, Fu, ChengXin, Zeng, ChunXia, Yan, HaiFei, Zhu, YingJie, Sun, YongShuai, Chen, SiYun, Zhao, Lei, Wang, Kun, Yang, Tuo, Duan, GuangWen, China Plant BOL Grp. Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2011, 108(49): 19641-19646, http://ir.ibcas.ac.cn/handle/2S10CLM1/13272.
[41] Liu, Yan, Yan, HaiFei, Cao, Tong, Ge, XueJun. Evaluation of 10 plant barcodes in Bryophyta (Mosses). JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2010, 48(1): 36-46, http://dx.doi.org/10.1111/j.1759-6831.2009.00063.x.
[42] Jian, Shuguang, Ban, Jiawei, Ren, Hai, Yan, Haifei. Low genetic variation detected within the widespread mangrove species Nypa fruticans (Palmae) from Southeast Asia. AQUATIC BOTANY[J]. 2010, 92(1): 23-27, http://dx.doi.org/10.1016/j.aquabot.2009.09.003.
[43] 颜海飞, 王凤英, 郝刚. 报春花属的保育遗传学及亲缘地理学研究进展. 广西植物[J]. 2009, 29(6): 751-757, http://lib.cqvip.com/Qikan/Article/Detail?id=32316727.
[44] 宁淑萍, 颜海飞, 郝刚, 葛学军. 植物DNA条形码研究进展. 生物多样性[J]. 2008, 16(5): 417-425, http://lib.cqvip.com/Qikan/Article/Detail?id=28327363.
[45] 颜海飞, 彭镜毅, 胡启明, 郝刚. 基于叶绿体微卫星研究鄂报春谱系遗传结构. 植物分类学报[J]. 2007, 45(4): 488-496, http://lib.cqvip.com/Qikan/Article/Detail?id=24994862.
[46] YAN HaiFei, PENG ChingI, HU ChiMing, HAO Gang. 基于叶绿体微卫星研究鄂报春谱系遗传结构. 植物分类学报[J]. 2007, 45(4): 488-496, http://lib.cqvip.com/Qikan/Article/Detail?id=24994862.
[47] 颜海飞, 彭镜毅, 胡启明, 郝刚. 基于叶绿体微卫星研究鄂报春谱系遗传结构_英文_. 植物分类学报[J]. 2007, 45(4): 488-496, http://ir.scbg.ac.cn/handle/344003/15555.
[48] 颜海飞, 王小兰, 胡启明, 郝刚. 鄂报春（Primula obconica Hance）亲缘地理学的初步研究. 热带亚热带植物学报[J]. 2005, 13(6): 526-532, http://lib.cqvip.com/Qikan/Article/Detail?id=20649408.

   

（ 1 ） 海仙花复合体生境适应分化机制研究, 主持, 国家级, 2013-01--2016-12
（ 2 ） 基于叶绿体基因组构建辐射演化类群报春花属系统发育框架的研究, 主持, 国家级, 2016-01--2019-12
（ 3 ） 报春花属海仙花复合体的杂交物种形成研究, 主持, 省级, 2015-01--2018-01
（ 4 ） 我国华南及周边地区报春花资源调查与引种栽培, 主持, 省级, 2016-01--2018-12
（ 5 ） 采用叶绿体基因组研究重要园艺类群报春花属植物的亲缘关系, 主持, 省级, 2016-04--2019-03
（ 6 ） 我国珍珠菜属（报春花科）海拔物种多样性格局及其成因的研究, 主持, 国家级, 2019-01--2022-12

已指导学生

肖凯伦  硕士研究生  085238-生物工程  

杨涛  硕士研究生  071001-植物学  

现指导学生

黄少溶  硕士研究生  085238-生物工程