基本信息
马占山  男  博导  中国科学院昆明动物研究所
email: ma@vandals.uidaho.edu
address: 中科院昆明动物研究所
postalCode: 650223

招生信息

   
招生专业
071007-遗传学
081203-计算机应用技术
招生方向
计算生物学,生物信息学,医学生态学
计算智能和进化计算
网络软件可靠性和可存活性

教育背景

2006-03--2008-05   University of Idaho   PhD in Computer Science
1992-05--1997-12   University of Idaho   PhD in Entomology, MSc in Computer Science

工作经历

   
工作简历
2010-11~现在, 中科院动物研究所, 研究员
2008-06~2010-11,University of Idaho, Research Scientist
2006-03~2008-05,University of Idaho, PhD in Computer Science
1998-01~2006-03,Micron Technology, Tumbleweed Communications Corp., Senior Network/Software Engineer
1992-05~1997-12,University of Idaho, PhD in Entomology, MSc in Computer Science
社会兼职
2009-04-01-今,Member of Faculty 1000 of Biology and Medicine,

专利与奖励

   
奖励信息
(1) 国家教委“霍英东优秀青年教师基金奖”, , 部委级, 1992
专利成果
( 1 ) 多显卡组合驱动的多显示器系统, 2015, 第 1 作者, 专利号: ZL201420517805.9
( 2 ) 用于高性能计算机的微型空调制冷系统, 2015, 第 1 作者, 专利号: ZL 2014 2 0517804.4
( 3 ) 201710063855.2, 2017, 第 1 作者, 专利号: 201710063855.2
( 4 ) 201710066344.6, 2017, 第 1 作者, 专利号: 201710066344.6
( 5 ) 201710949841.0, 2017, 第 1 作者, 专利号: 201710949841.0
( 6 ) 201711223008.4, 2017, 第 1 作者, 专利号: 201711223008.4
( 7 ) 201711289534.0, 2017, 第 1 作者, 专利号: 201711289534.0
( 8 ) 用于组装基因组序列的方法、系统及装置, 2019, 第 2 作者, 专利号: ZL 201510084489.X
( 9 ) 201810159081.8, 2018, 第 1 作者, 专利号: 201810159081.8
( 10 ) 201810159082.2, 2018, 第 1 作者, 专利号: 201810159082.2
( 11 ) 201820827933.3, 2018, 第 1 作者, 专利号: 201820827933.3
( 12 ) 201911299315.X, 2019, 第 1 作者, 专利号: 201911299315.X
( 13 ) 201911299411.4, 2019, 第 1 作者, 专利号: 201911299411.4
( 14 ) 201911351370.9, 2019, 第 1 作者, 专利号: 201911351370.9

出版信息

   
发表论文
(1) FBA Ecological Guild: Trio of Firmicutes-Bacteroidetes Alliance against Actinobacteria in Human Oral Microbiome, Scientific Reports, 2020, 第 11 作者
(2) Individual-Level Genetic Diversity and Similarity Profiles, Scientific Reports, 2020, 第 1 作者
(3) Network analysis of the hot spring microbiome sketches possible niche differentiations among ecological guilds, Ecological Modelling, 2020, 第 11 作者
(4) Species sorting and neutral theory analyses reveal archaeal and bacterial communities are assembled differently in hot springs, Frontiers in Bioengineering and Biotechnology, 2020, 第 11 作者
(5) Estimating the optimum coverage and quality of amplicon sequencing with Taylor's power law, Frontiers in Bioengineering and Biotechnology, 2020, 第 1 作者
(6) Assessing and interpreting the metagenome heterogeneity with power law, Frontiers in Microbiology, 2020, 第 1 作者
(7) Critical Network Structures and Medical Ecology Mechanisms Underlying Human Microbiome-Associated Diseases, iScience, 2020, 第 1 作者
(8) Heterogeneity-disease relationship in the human microbiome associated diseases, FEMS Microbiology Ecology, 2020, 第 1 作者
(9) Testing the Anna Karenina Principle in Human Microbiome-Associated Diseases, iScience, 2020, 第 1 作者
(10) Human reproductive system microbiomes exhibited significantly different heterogeneity scaling with gut microbiome, but the intra-system scaling is invariant, Oikos, 2020, 第 1 作者
(11) Diversity time-period and diversity-time-area relationships exemplified by the human microbiome, Scientific Reports, 2020, 第 1 作者
(12) Dominance network analysis provides a new framework for studying the diversity–stability relationship, Ecological Monographs, 2019, 第 1 作者
(13) Diversity-disease relationships and shared species analyses for human microbiome-associated diseases, The ISME Journal, 2019, 第 1 作者
(14) A new DTAR (diversity–time–area relationship) model demonstrated with the indoor microbiome, Journal of Biogeography, 2019, 第 1 作者
(15) Comparative Power Law Analysis for the Spatial Heterogeneity Scaling of the Hot-Spring Microbiomes, Molecular Ecology, 2019, 第 11 作者
(16) Hybrid assembly of ultra-long Nanopore® reads augmented with 10×genomics® contigs: Demonstrated with a human genome., Genomics, 2019, 第 11 作者
(17) Global Microbiome Diversity Scaling in Hot Springs With DAR (Diversity-Area Relationship) Profiles, Frontiers in Microbiology, 2019, 第 11 作者
(18) Semen Microbiome Biogeography: An Analysis Based on a Chinese Population Study, Frontiers in Microbiology, 2019, 第 11 作者
(19) How and Why Men and Women Differ in Their Microbiomes: Medical Ecology and Network Analyses of the Microgenderome, Advanced Science, 2019, 第 1 作者
(20) Diversity scaling of human vaginal microbial communities, Zoological Research, 2019, 第 11 作者
(21) Diversity time-period and diversity-time-area relationships exemplified by the human microbiome, Scientific Reports, 2018, 第 1 作者
(22) A cross-scale neutral theory approach to the influence of obesity on community assembly of human gut microbiome, Frontiers in Microbiology, 2018, 第 11 作者
(23) A unified concept of dominance applicable at both community and species scale, Ecosphere, 2018, 第 1 作者
(24) Extending species-area relationships (SAR) to diversity-area relationships (DAR), Ecology and Evolution, 2018, 第 1 作者
(25) Sketching the human microbiome biogeography with DAR (diversity-area relationship) profiles, Microbial Ecology, 2018, 第 1 作者
(26) Assessing and interpreting the within-Body biogeography of human microbiome diversity, Frontiers in Microbiology, 2018, 第 1 作者
(27) Measuring metagenome diversity and similarity with Hill numbers, Molecular Ecology Resources, 2018, 第 1 作者
(28) The P/N (Positive-to-negative links) ratio in complex networks— a promising in silico biomarkers for detecting changes occurring in the human microbiome., Microbial Ecology, 2017, 第 1 作者
(29) Trios— promising in silico biomarkers for differentiating the effect of disease on the human microbiome network, Scientific Reports, 2017, 第 1 作者
(30) Quantifying the human vaginal community state types (CSTs) with the species specificity index., PeerJ, 2017, 第 1 作者
(31) Does colorectal cancer significantly influence the assembly of gut microbial communities?, PeerJ, 2017, 第 11 作者
(32) Oral microbial community assembly under the influence of periodontitis., Plos One, 2017, 第 11 作者
(33) CPPred-RF: A Sequence-based Predictor for Identifying Cell-Penetrating Peptides and Their Uptake EfficiencyJournal of Proteome, Journal of Proteome, 2017, 第 11 作者
(34) Reconstructing evolutionary trees in parallel for massive sequences, BMC Systems Biology, 2017, 第 11 作者
(35) Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads, PeerJ, 2016, 第 11 作者
(36) Integrated network-diversity analyses suggest suppressive e ect of Hodgkin’s lymphoma and slightly relieving e ect of chemotherapy on human milk microbiome, Scientific Reports, 2016, 第 11 作者
(37) A Brief Review on the Ecological Network Analysis 1 with Applications in the Emerging Medical Ecology, Springer Methods & Protocol, 2016, 第 11 作者
(38) Scientific Reports, 2015, 第 1 作者
(39) Cognitive System Research, 2015, 第 1 作者
(40) Cognitive System Research, 2015, 第 1 作者
(41) Power Law Analysis of the Human Microbiome, Molecular Ecology, 2015, 第 11 作者
(42) A Survivability-Centered Research Agenda for Cloud Computing Supported Emergency Response and Management Systems., IEEE-AIAA Aerospace, 2014, 第 1 作者
(43) The ISME Journal, 2014, 第 11 作者
(44) Spatial heterogeneity and co-occurrence patterns of human mucosal associated intestinal microbiota, The ISME Journal, 2013, 第 11 作者
(45) Stochastic populations, power law and fitness aggregation in Genetic Algorithms. Fundamenta Informaticae, Fundamenta Informaticae, 2013, 第 1 作者
(46) Chaotic populations in Genetic Algorithms., Applied Soft Computing, 2012, 第 1 作者
(47) A unified definition for reliability, survivability and resilience inspired by the handicap principle and ecological stability, International Journal of Critical Infrastructures,, 2012, 第 1 作者
(48) A Bird Eye View of Microbial Community Dynamics, Microbial Ecological Theory , 2012, 第 1 作者
(49) Exploiting sparseness in de novo genome assembly, BMC Bioinformatics, 2012, 第 2 作者
(50) Temporal Dynamics of the Human Vaginal Microbiota, Science Translational Medicine, 2012, 第 11 作者
(51) 宏基因组研究的生物信息学平台现状, 动物学研究, 2012, 第 11 作者
(52) Insect Navigation and Communication in Flight and Migration: A Potential Model for Joining and Collision Avoidance in MAV (Micro-Aerial Vehicle) and Mobile Robots Fleet Control., Proceedings of The 32nd IEEE-AIAA AeroSpace Conference, 2011, 第 1 作者
(53) SparseAssembler: de novo Assembly with the Sparse de Bruijn Graph , CoRR abs/1106.2603, 2011, 第 2 作者
(54) Dynamic hybrid fault modeling and extended evolutionary game theory for reliability, survivability and fault tolerance analyses. , IEEE Transactions on Reliability. , 2011, 第 1 作者
(55) Did we miss some evidence of chaos in laboratory insect populations, Population Ecology, 2011, 第 1 作者
(56) Ecological ‘theatre’ for evolutionary computing ‘play’: some insights from population and evolutionary ecology., I.J. Bio-Inspired Computing, 2011, 第 1 作者
(57) Frailty modeling for risk analysis in network security and survivability, I. J. of Information and Computer Security, 2011, 第 1 作者
(58) Recent advances in understanding the microbiology of the female reproductive tract and the causes of premature birth. , Infectious Diseases of Obstetrics and Gynecology., 2010, 第 11 作者
(59) Survival Analysis Approach to Life Table Analysis and Hypothesis Testing for Russian Wheat Aphid Populations., Bulletin of Entomological Research, 2010, 第 1 作者
(60) Insect Sensory Systems Inspired Computing and Communications., Ad Hoc Networks, 2009, 第 1 作者
(61) Towards a Population Dynamics Theory for Evolutionary Computing: Learning from Biological Population Dynamics in Nature., Springer Lecture Notes in Artificial Intelligence, 2009, 第 1 作者
发表著作
( 1 ) Book Chapter: Measuring Microbiome Diversity with Hill Numbers., Metagenomics: Perspecitives, Methods, and Applications., Elsevier, 2017-07, 第 5 作者
( 2 ) 《生物信息学:计算技术和软件导论》, Bioinformatics: Computing and Software, 科学出版社, 2017-09, 第 1 作者

科研活动

   
科研项目
( 1 ) ****, 主持, 部委级, 2011-01--2013-12
( 2 ) 遗传资源国家重点试验室启动基金, 主持, 研究所(学校), 2011-07--2012-07
( 3 ) 云南省引进高端科技人才项目, 主持, 省级, 2012-10--2014-11
( 4 ) 网络系统可存活性理论的扩展及实证研究, 主持, 国家级, 2014-01--2018-12
( 5 ) 云岭产业技术领军人才项目, 主持, 省级, 2015-10--2020-12
( 6 ) 菌群多样性与疾病关系的生态机制及病因研究, 主持, 国家级, 2020-01--2023-12
( 7 ) 基因大数据信息技术及其应用, 主持, 研究所(学校), 2017-01--2020-12