基本信息
马占山  男  博导  中国科学院昆明动物研究所
电子邮件: ma@vandals.uidaho.edu
通信地址: 中科院昆明动物研究所
邮政编码: 650223

招生信息

   
招生专业
071007-遗传学
081203-计算机应用技术
招生方向
计算生物学,生物信息学,医学生态学
计算智能和进化计算
网络软件可靠性和可存活性

教育背景

2006-03--2008-05   University of Idaho   PhD in Computer Science
1992-05--1997-12   University of Idaho   PhD in Entomology, MSc in Computer Science

工作经历

   
工作简历
2010-11~现在, 中科院动物研究所, 研究员
2008-06~2010-11,University of Idaho, Research Scientist
2006-03~2008-05,University of Idaho, PhD in Computer Science
1998-01~2006-03,Micron Technology, Tumbleweed Communications Corp., Senior Network/Software Engineer
1992-05~1997-12,University of Idaho, PhD in Entomology, MSc in Computer Science
社会兼职
2009-04-01-今,Member of Faculty 1000 of Biology and Medicine,

专利与奖励

   
奖励信息
(1) 国家教委“霍英东优秀青年教师基金奖”, , 部委级, 1992
专利成果
( 1 ) 多显卡组合驱动的多显示器系统, 2015, 第 1 作者, 专利号: ZL201420517805.9
( 2 ) 用于高性能计算机的微型空调制冷系统, 2015, 第 1 作者, 专利号: ZL 2014 2 0517804.4
( 3 ) 201710063855.2, 2017, 第 1 作者, 专利号: 201710063855.2
( 4 ) 201710066344.6, 2017, 第 1 作者, 专利号: 201710066344.6
( 5 ) 201710949841.0, 2017, 第 1 作者, 专利号: 201710949841.0
( 6 ) 201711223008.4, 2017, 第 1 作者, 专利号: 201711223008.4
( 7 ) 201711289534.0, 2017, 第 1 作者, 专利号: 201711289534.0
( 8 ) 用于组装基因组序列的方法、系统及装置, 2019, 第 2 作者, 专利号: ZL 201510084489.X
( 9 ) 201810159081.8, 2018, 第 1 作者, 专利号: 201810159081.8
( 10 ) 201810159082.2, 2018, 第 1 作者, 专利号: 201810159082.2
( 11 ) 201820827933.3, 2018, 第 1 作者, 专利号: 201820827933.3
( 12 ) 201911299315.X, 2019, 第 1 作者, 专利号: 201911299315.X
( 13 ) 201911299411.4, 2019, 第 1 作者, 专利号: 201911299411.4
( 14 ) 201911351370.9, 2019, 第 1 作者, 专利号: 201911351370.9

出版信息

   
发表论文
(1) FBA Ecological Guild: Trio of Firmicutes-Bacteroidetes Alliance against Actinobacteria in Human Oral Microbiome, Scientific Reports, 2020, 通讯作者
(2) Individual-Level Genetic Diversity and Similarity Profiles, Scientific Reports, 2020, 第 1 作者
(3) Network analysis of the hot spring microbiome sketches possible niche differentiations among ecological guilds, Ecological Modelling, 2020, 通讯作者
(4) Species sorting and neutral theory analyses reveal archaeal and bacterial communities are assembled differently in hot springs, Frontiers in Bioengineering and Biotechnology, 2020, 通讯作者
(5) Estimating the optimum coverage and quality of amplicon sequencing with Taylor's power law, Frontiers in Bioengineering and Biotechnology, 2020, 第 1 作者
(6) Assessing and interpreting the metagenome heterogeneity with power law, Frontiers in Microbiology, 2020, 第 1 作者
(7) Critical Network Structures and Medical Ecology Mechanisms Underlying Human Microbiome-Associated Diseases, iScience, 2020, 第 1 作者
(8) Heterogeneity-disease relationship in the human microbiome associated diseases, FEMS Microbiology Ecology, 2020, 第 1 作者
(9) Testing the Anna Karenina Principle in Human Microbiome-Associated Diseases, iScience, 2020, 第 1 作者
(10) Human reproductive system microbiomes exhibited significantly different heterogeneity scaling with gut microbiome, but the intra-system scaling is invariant, Oikos, 2020, 第 1 作者
(11) Diversity time-period and diversity-time-area relationships exemplified by the human microbiome, Scientific Reports, 2020, 第 1 作者
(12) Dominance network analysis provides a new framework for studying the diversity–stability relationship, Ecological Monographs, 2019, 第 1 作者
(13) Diversity-disease relationships and shared species analyses for human microbiome-associated diseases, The ISME Journal, 2019, 第 1 作者
(14) A new DTAR (diversity–time–area relationship) model demonstrated with the indoor microbiome, Journal of Biogeography, 2019, 第 1 作者
(15) Comparative Power Law Analysis for the Spatial Heterogeneity Scaling of the Hot-Spring Microbiomes, Molecular Ecology, 2019, 通讯作者
(16) Hybrid assembly of ultra-long Nanopore® reads augmented with 10×genomics® contigs: Demonstrated with a human genome., Genomics, 2019, 通讯作者
(17) Global Microbiome Diversity Scaling in Hot Springs With DAR (Diversity-Area Relationship) Profiles, Frontiers in Microbiology, 2019, 通讯作者
(18) Semen Microbiome Biogeography: An Analysis Based on a Chinese Population Study, Frontiers in Microbiology, 2019, 通讯作者
(19) How and Why Men and Women Differ in Their Microbiomes: Medical Ecology and Network Analyses of the Microgenderome, Advanced Science, 2019, 第 1 作者
(20) Diversity scaling of human vaginal microbial communities, Zoological Research, 2019, 通讯作者
(21) Diversity time-period and diversity-time-area relationships exemplified by the human microbiome, Scientific Reports, 2018, 第 1 作者
(22) A cross-scale neutral theory approach to the influence of obesity on community assembly of human gut microbiome, Frontiers in Microbiology, 2018, 通讯作者
(23) A unified concept of dominance applicable at both community and species scale, Ecosphere, 2018, 第 1 作者
(24) Extending species-area relationships (SAR) to diversity-area relationships (DAR), Ecology and Evolution, 2018, 第 1 作者
(25) Sketching the human microbiome biogeography with DAR (diversity-area relationship) profiles, Microbial Ecology, 2018, 第 1 作者
(26) Assessing and interpreting the within-Body biogeography of human microbiome diversity, Frontiers in Microbiology, 2018, 第 1 作者
(27) Measuring metagenome diversity and similarity with Hill numbers, Molecular Ecology Resources, 2018, 第 1 作者
(28) The P/N (Positive-to-negative links) ratio in complex networks— a promising in silico biomarkers for detecting changes occurring in the human microbiome., Microbial Ecology, 2017, 第 1 作者
(29) Trios— promising in silico biomarkers for differentiating the effect of disease on the human microbiome network, Scientific Reports, 2017, 第 1 作者
(30) Quantifying the human vaginal community state types (CSTs) with the species specificity index., PeerJ, 2017, 第 1 作者
(31) Does colorectal cancer significantly influence the assembly of gut microbial communities?, PeerJ, 2017, 通讯作者
(32) Oral microbial community assembly under the influence of periodontitis., Plos One, 2017, 通讯作者
(33) CPPred-RF: A Sequence-based Predictor for Identifying Cell-Penetrating Peptides and Their Uptake EfficiencyJournal of Proteome, Journal of Proteome, 2017, 通讯作者
(34) Reconstructing evolutionary trees in parallel for massive sequences, BMC Systems Biology, 2017, 通讯作者
(35) Sparc: a sparsity-based consensus algorithm for long erroneous sequencing reads, PeerJ, 2016, 通讯作者
(36) Integrated network-diversity analyses suggest suppressive e ect of Hodgkin’s lymphoma and slightly relieving e ect of chemotherapy on human milk microbiome, Scientific Reports, 2016, 通讯作者
(37) A Brief Review on the Ecological Network Analysis 1 with Applications in the Emerging Medical Ecology, Springer Methods & Protocol, 2016, 通讯作者
(38) Scientific Reports, 2015, 第 1 作者
(39) Cognitive System Research, 2015, 第 1 作者
(40) Cognitive System Research, 2015, 第 1 作者
(41) Power Law Analysis of the Human Microbiome, Molecular Ecology, 2015, 通讯作者
(42) A Survivability-Centered Research Agenda for Cloud Computing Supported Emergency Response and Management Systems., IEEE-AIAA Aerospace, 2014, 第 1 作者
(43) The ISME Journal, 2014, 通讯作者
(44) Spatial heterogeneity and co-occurrence patterns of human mucosal associated intestinal microbiota, The ISME Journal, 2013, 通讯作者
(45) Stochastic populations, power law and fitness aggregation in Genetic Algorithms. Fundamenta Informaticae, Fundamenta Informaticae, 2013, 第 1 作者
(46) Chaotic populations in Genetic Algorithms., Applied Soft Computing, 2012, 第 1 作者
(47) A unified definition for reliability, survivability and resilience inspired by the handicap principle and ecological stability, International Journal of Critical Infrastructures,, 2012, 第 1 作者
(48) A Bird Eye View of Microbial Community Dynamics, Microbial Ecological Theory , 2012, 第 1 作者
(49) Exploiting sparseness in de novo genome assembly, BMC Bioinformatics, 2012, 第 2 作者
(50) Temporal Dynamics of the Human Vaginal Microbiota, Science Translational Medicine, 2012, 通讯作者
(51) 宏基因组研究的生物信息学平台现状, 动物学研究, 2012, 通讯作者
(52) Insect Navigation and Communication in Flight and Migration: A Potential Model for Joining and Collision Avoidance in MAV (Micro-Aerial Vehicle) and Mobile Robots Fleet Control., Proceedings of The 32nd IEEE-AIAA AeroSpace Conference, 2011, 第 1 作者
(53) SparseAssembler: de novo Assembly with the Sparse de Bruijn Graph , CoRR abs/1106.2603, 2011, 第 2 作者
(54) Dynamic hybrid fault modeling and extended evolutionary game theory for reliability, survivability and fault tolerance analyses. , IEEE Transactions on Reliability. , 2011, 第 1 作者
(55) Did we miss some evidence of chaos in laboratory insect populations, Population Ecology, 2011, 第 1 作者
(56) Ecological ‘theatre’ for evolutionary computing ‘play’: some insights from population and evolutionary ecology., I.J. Bio-Inspired Computing, 2011, 第 1 作者
(57) Frailty modeling for risk analysis in network security and survivability, I. J. of Information and Computer Security, 2011, 第 1 作者
(58) Recent advances in understanding the microbiology of the female reproductive tract and the causes of premature birth. , Infectious Diseases of Obstetrics and Gynecology., 2010, 通讯作者
(59) Survival Analysis Approach to Life Table Analysis and Hypothesis Testing for Russian Wheat Aphid Populations., Bulletin of Entomological Research, 2010, 第 1 作者
(60) Insect Sensory Systems Inspired Computing and Communications., Ad Hoc Networks, 2009, 第 1 作者
(61) Towards a Population Dynamics Theory for Evolutionary Computing: Learning from Biological Population Dynamics in Nature., Springer Lecture Notes in Artificial Intelligence, 2009, 第 1 作者
发表著作
( 1 ) Book Chapter: Measuring Microbiome Diversity with Hill Numbers., Metagenomics: Perspecitives, Methods, and Applications., Elsevier, 2017-07, 第 5 作者
( 2 ) 《生物信息学:计算技术和软件导论》, Bioinformatics: Computing and Software, 科学出版社, 2017-09, 第 1 作者

科研活动

   
科研项目
( 1 ) ****, 主持, 部委级, 2011-01--2013-12
( 2 ) 遗传资源国家重点试验室启动基金, 主持, 研究所(学校), 2011-07--2012-07
( 3 ) 云南省引进高端科技人才项目, 主持, 省级, 2012-10--2014-11
( 4 ) 网络系统可存活性理论的扩展及实证研究, 主持, 国家级, 2014-01--2018-12
( 5 ) 云岭产业技术领军人才项目, 主持, 省级, 2015-10--2020-12
( 6 ) 菌群多样性与疾病关系的生态机制及病因研究, 主持, 国家级, 2020-01--2023-12
( 7 ) 基因大数据信息技术及其应用, 主持, 研究所(学校), 2017-01--2020-12