基本信息
张法  男  博导  中国科学院计算技术研究所
电子邮件: zhangfa@ict.ac.cn
通信地址: 科学院南路6号中科院计算所
邮政编码: 100190

招生信息

   
招生专业
081201-计算机系统结构
招生方向
生物信息学; 高性能算法

教育背景

2002-10--2005-04 Ohio State University Visiting Schloar
2000-09--2005-06 中国科学院计算技术研究所 获得博士学位

工作经历

   
工作简历
2009-10--2010-01 Universidad Rey Juan Carlos Visting Scholar
2005-07--今 中国科学院计算技术研究所 任职

专利与奖励

   
专利成果
[1] 张法, 颜锐, 谭光明, 任菲, 刘志勇, 刘玉东, 张云峰. 基于多模态深度学习的病理分类方法及系统. CN: CN110298383B, 2021-07-13.
[2] 万晓华, 赵方圆, 张法, 刘新宇. 一种基于异步数据传输的GPU调度方法及系统. CN: CN112346866A, 2021-02-09.
[3] 张法, 郝语, 万晓华, 刘志勇, 李锦涛. 一种基于卷积神经网络的三维颗粒类别检测方法及系统. CN: CN112001218A, 2020-11-27.
[4] 刘志勇, 石翔, 张法, 王林, 周碧玉. 一种流调度方法. CN: CN111211996A, 2020-05-29.
[5] 万晓华, 吕智龙, 张法, 王醒策, 刘新宇. 一种基于磁共振血管造影图像的脑血管分割方法和系统. CN: CN111126403A, 2020-05-08.
[6] 万晓华, 张恩泽, 张法. 基于卷积神经网络的ET细胞图像自动分割方法及系统. CN: CN110580704A, 2019-12-17.
[7] 万晓华, 申泽南, 张法, 张金智, 甘志猛. 芸香科多物种密码子使用模式分析方法和系统. CN: CN110400604A, 2019-11-01.
[8] 张法, 王有识, 刘志勇, 池策, 王蕊. 多租户数据中心能效优化方法、系统及联合建模方法. CN: CN109740178A, 2019-05-10.
[9] 韩仁敏, 王联姗, 张法. 电子断层图像对位中的图像匹配及胶体金点链生成方法. 中国: CN105069792B, 2018.01.26.
[10] 徐平勇, 张法, 徐帆, 张名姝, 贺文婷. 一种贝叶斯显微成像方法. 中国: CN106023121B, 2018-08-31.
[11] 韩仁敏, 王联姗, 张法. 一种电子断层图像中胶体金的直径估计及自动识别方法. 中国: CN105205840B, 2018-06-01.
[12] 韩仁敏, 张法, 储琪. 一种电子断层图像序列对位方法. 中国: CN103824294A, 2014.05.28.

出版信息

   
发表论文
[1] Fa Zhang. A Hybrid Frequency-Spatial Domain Model for Sparse Image Reconstruction in Scanning Transmission Electron Microscopy. ICCV. 2021, [2] Zhang, Jingrong, Wang, Zihao, Liu, Zhiyong, Zhang, Fa. Improve the Resolution and Parallel Performance of the Three-Dimensional Refine Algorithm in RELION Using CUDA and MPI. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS[J]. 2021, 18(2): 583-595, https://www.webofscience.com/wos/woscc/full-record/WOS:000639652100007.
[3] Shan Gao, Fan Xu, Hongjia Li, Fudong Xue, Mingshu Zhang, Pingyong Xu, Fa Zhang. DETECTOR: structural information guided artifact detection for super-resolution fluorescence microscopy image. Biomedical Optics Express. 2021, 12(9): 5751-5769, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8515955/.
[4] Fa Zhang. Macromolecules Structural Classification with a 3D Dilated Dense Network in Cryo-electron Tomography. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2021, [5] Yan, Rui, Zhang, Fa, Rao, Xiaosong, Lv, Zhilong, Li, Jintao, Zhang, Lingling, Liang, Shuang, Li, Yilin, Ren, Fei, Zheng, Chunhou, Liang, Jun. Richer fusion network for breast cancer classification based on multimodal data. BMC MEDICAL INFORMATICS AND DECISION MAKING[J]. 2021, 21(SUPPL 1): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8061018/.
[6] Fa Zhang. Self-Supervised Cryo-Electron Tomography Volumetric Image Restoration from Single Noisy Volume with Sparsity Constraint. ICCV. 2021, [7] Chi, Ce, Zhang, Fa, Ji, Kaixuan, Marahatta, Avinab, Liu, Zhiyong. Improving energy efficiency in colocation data centers for demand response. SUSTAINABLE COMPUTING-INFORMATICS & SYSTEMS[J]. 2021, 29: http://dx.doi.org/10.1016/j.suscom.2020.100476.
[8] Chi, Ce, Ji, Kaixuan, Song, Penglei, Marahatta, Avinab, Zhang, Shikui, Zhang, Fa, Qiu, Dehui, Liu, Zhiyong. Cooperatively Improving Data Center Energy Efficiency Based on Multi-Agent Deep Reinforcement Learning. ENERGIES[J]. 2021, 14(8): https://doaj.org/article/6519e27ec2e8472bb251276a615c33aa.
[9] Han, Renmin, Li, Lun, Yang, Peng, Zhang, Fa, Gao, Xin. A novel constrained reconstruction model towards high-resolution subtomogram averaging. BIOINFORMATICS[J]. 2021, 37(11): 1616-1626, http://dx.doi.org/10.1093/bioinformatics/btz787.
[10] Ji, Kaixuan, Chi, Ce, Zhang, Fa, Anta, Antonio Fernandez, Song, Penglei, Marahatta, Avinab, Wang, Youshi, Liu, Zhiyong. Energy-Aware Scheduling Based on Marginal Cost and Task Classification in Heterogeneous Data Centers. ENERGIES[J]. 2021, 14(9): https://doaj.org/article/67e7fe56af7a42c3b5e752df266e036e.
[11] Yan, Rui, Ren, Fei, Wang, Zihao, Wang, Lihua, Zhang, Tong, Liu, Yudong, Rao, Xiaosong, Zheng, Chunhou, Zhang, Fa. Breast cancer histopathological image classification using a hybrid deep neural network. METHODS[J]. 2020, 173: 52-60, http://dx.doi.org/10.1016/j.ymeth.2019.06.014.
[12] Lv, Zhilong, Mi, Fubo, Wu, Zhongke, Zhu, Yicheng, Liu, Xinyu, Tian, Mei, Zhang, Fa, Wang, Xingce, Wan, Xiaohua. A Parallel Cerebrovascular Segmentation Algorithm Based on Focused Multi-Gaussians Model and Heterogeneous Markov Random Field. IEEE TRANSACTIONS ON NANOBIOSCIENCE[J]. 2020, 19(3): 538-546, http://dx.doi.org/10.1109/TNB.2020.2996604.
[13] Li, Hongjia, Xu, Fan, Gao, Shan, Zhang, Mingshu, Xue, Fudong, Xu, Pingyong, Zhang, Fa. Live-SIMBA: an ImageJ plug-in for the universal and accelerated single molecule-guided Bayesian localization super resolution microscopy (SIMBA) method. BIOMEDICAL OPTICS EXPRESS[J]. 2020, 11(10): 5842-5859, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7587271/.
[14] Shen, Zenan, Gan, Zhimeng, Zhang, Fa, Yi, Xinyao, Zhang, Jinzhi, Wan, Xiaohua. Analysis of codon usage patterns in citrus based on coding sequence data. BMC GENOMICS[J]. 2020, 21(Suppl 5): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7739459/.
[15] Wang, Zihao, Zhang, Jingrong, Gao, Weifang, Liu, Zhiyong, Wan, Xiaohua, Zhang, Fa. A Consensus Framework of Distributed Multiple-Tilt Reconstruction in Electron Tomography. JOURNAL OF COMPUTATIONAL BIOLOGY[J]. 2020, 27(2): 212-222, https://www.webofscience.com/wos/woscc/full-record/WOS:000500391900001.
[16] Zhang, Mingshu, Fu, Zhifei, Li, Changqing, Liu, Anyuan, Peng, Dingming, Xue, Fudong, He, Wenting, Gao, Shan, Xu, Fan, Xu, Dan, Yuan, Ling, Zhang, Fa, Xu, Zhiheng, Xu, Tao, Xu, Pingyong. Fast Super-Resolution Imaging Technique and Immediate Early Nanostructure Capturing by a Photoconvertible Fluorescent Protein. NANO LETTERS[J]. 2020, 20(4): 2197-2208, https://www.webofscience.com/wos/woscc/full-record/WOS:000526413400001.
[17] Gubins, Ilja, Chaillet, Marten L, van der Schot, Gijs, Veltkamp, Remco C, Forster, Friedrich, Hao, Yu, Wan, Xiaohua, Cui, Xuefeng, Zhang, Fa, Moebel, Emmanuel, Wang, Xiao, Kihara, Daisuke, Zeng, Xiangrui, Xu, Min, Nguyen, Nguyen P, White, Tommi, Bunyak, Filiz. SHREC 2020: Classification in cryo-electron tomograms. COMPUTERS & GRAPHICS-UK[J]. 2020, 91: 279-289, http://dx.doi.org/10.1016/j.cag.2020.07.010.
[18] Liu, Congyue, Liu, Wei, Wang, Shufeng, Li, Hongjia, Lv, Zhilong, Zhang, Fa, Zhang, Donghui, Teng, Junlin, Zheng, Tao, Li, Donghai, Zhang, Mingshu, Xu, Pingyong, Gong, Qihuang. Super-resolution nanoscopy by coherent control on nanoparticle emission. SCIENCE ADVANCES[J]. 2020, 6(16): https://www.webofscience.com/wos/woscc/full-record/WOS:000528276800002.
[19] Li, Lun, Han, Renmin, Zhang, Zhaotian, Guo, Tiande, Liu, Zhiyong, Zhang, Fa. Compressed sensing improved iterative reconstruction-reprojection algorithm for electron tomography. BMC BIOINFORMATICS[J]. 2020, 21(Suppl 6): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7672846/.
[20] Shi, Xiang, Wang, Lin, Zhang, Fa, Zhou, Biyu, Liu, Zhiyong, IEEE. PStream: Priority-Based Stream Scheduling for Heterogeneous Paths in Multipath-QUIC. 2020 29TH INTERNATIONAL CONFERENCE ON COMPUTER COMMUNICATIONS AND NETWORKS (ICCCN 2020)null. 2020, [21] Zhu, Lei, Cai, Hongmin, Zhang, Fa, Zou, Quan, Wei, Yanjie, Zheng, Huiru. Editorial: Computational Learning Models and Methods Driven by Omics for Precision Medicine. FRONTIERS IN GENETICSnull. 2020, 11: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7785880/.
[22] 王继业, 周碧玉, 张法, 石翔, 曾楠, 刘志勇. 数据中心能耗模型及能效算法综述. 计算机研究与发展[J]. 2019, 56(8): 1587-1603, [23] 张明喆, 张法, 刘志勇. 基于动态权衡的新型非易失存储器件体系结构研究综述. 计算机研究与发展[J]. 2019, 56(4): 677-691, http://lib.cqvip.com/Qikan/Article/Detail?id=7001708070.
[24] Wang, Youshi, Zhang, Fa, Chi, Ce, Ren, Shaolei, Liu, Fangming, Wang, Rui, Liu, Zhiyong. A market-oriented incentive mechanism for emergency demand response in colocation data centers. SUSTAINABLE COMPUTING-INFORMATICS & SYSTEMS[J]. 2019, 22: 13-25, http://dx.doi.org/10.1016/j.suscom.2019.01.020.
[25] Shi, Xiang, Wang, Lin, Zhang, Fa, Zheng, Kai, Muehlhaeuser, Max, Liu, Zhiyong. PABO: Mitigating congestion via packet bounce in data center networks. COMPUTER COMMUNICATIONS[J]. 2019, 140: 1-14, http://dx.doi.org/10.1016/j.comcom.2019.04.002.
[26] Youshi Wang, Fa Zhang, Ce Chi, Shaolei Ren, Fangming Liu, Rui Wang, Zhiyong Liu. A market-oriented incentive mechanism for emergency demand response in colocation data centers. Sustainable Computing: Informatics and Systems. 2019, 22: 13-25, http://dx.doi.org/10.1016/j.suscom.2019.01.020.
[27] Zhang, Jingrong, Wang, Zihao, Chen, Yu, Han, Renmin, Liu, Zhiyong, Sun, Fei, Zhang, Fa. PIXER: an automated particle-selection method based on segmentation using a deep neural network. BMC Bioinformatics[J]. 2019, 20(1): 1-14, https://doaj.org/article/ed0f62abeaaf4a3abb363a05be440ba4.
[28] Han, Renmin, Wan, Xiaohua, Li, Lun, Lawrence, Albert, Yang, Peng, Li, Yu, Wang, Sheng, Sun, Fei, Liu, Zhiyong, Gao, Xin, Zhang, Fa. AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction. BIOINFORMATICS[J]. 2019, 35(2): 319-328, https://www.webofscience.com/wos/woscc/full-record/WOS:000459314900017.
[29] Zhou, Shuigeng, Zhang, Fa, Zhang, Le. Bioinformatics in Biological Big Data Era. CURRENT BIOINFORMATICSnull. 2018, 13(5): 435-436, https://www.webofscience.com/wos/woscc/full-record/WOS:000440847000001.
[30] Han, Renmin, Zhang, Fa, Gao, Xin. A fast fiducial marker tracking model for fully automatic alignment in electron tomography. BIOINFORMATICS[J]. 2018, 34(5): 853-863, https://www.webofscience.com/wos/woscc/full-record/WOS:000426813500018.
[31] Li, Yu, Xu, Fan, Zhang, Fa, Xu, Pingyong, Zhang, Mingshu, Fan, Ming, Li, Lihua, Gao, Xin, Han, Renmin. DLBI: deep learning guided Bayesian inference for structure reconstruction of super-resolution fluorescence microscopy. BIOINFORMATICS[J]. 2018, 34(13): 284-294, http://dx.doi.org/10.1093/bioinformatics/bty241.
[32] Fa Zhang. Deep learning guided Bayesian inference for potential structure recovery from high-density fluorophore localization microscopy. Bioinformatics. 2018, [33] Zhang Jingrong, Wang Zihao, Chen Yu, Liu Zhiyong, Zhang Fa, Zhang F, Cai Z, Skums P, Zhang S. Memory-Efficient and Stabilizing Management System and Parallel Methods for RELION Using CUDA and MPI. BIOINFORMATICS RESEARCH AND APPLICATIONS, ISBRA 2018null. 2018, 10847: 205-216, [34] Yu Chen, Zihao Wang, Lun Li, Jingrong Zhang, Xiaohua Wan, Fei Sun, Fa Zhang. AutoGDeterm: Automatic Geometry Determination for Electron Tomography. 清华大学学报:自然科学英文版. 2018, 23(4): 369-376, http://lib.cqvip.com/Qikan/Article/Detail?id=675781147.
[35] Wang, Zihao, Chen, Yu, Zhang, Jingrong, Li, Lun, Wan, Xiaohua, Liu, Zhiyong, Sun, Fei, Zhang, Fa. ICON-MIC: Implementing a CPU/MIC Collaboration Parallel Framework for ICON on Tianhe-2 Supercomputer. JOURNAL OF COMPUTATIONAL BIOLOGY[J]. 2018, 25(3): 270-281, https://www.webofscience.com/wos/woscc/full-record/WOS:000417292900001.
[36] Zhou, Biyu, Wu, Jie, Wang, Lin, Zhang, Fa, Liu, Zhiyong, IEEE. Joint Optimization of Server and Network Resource Utilization in Cloud Data Centers. GLOBECOM 2017 - 2017 IEEE GLOBAL COMMUNICATIONS CONFERENCEnull. 2017, [37] Xu, Fan, Zhang, Mingshu, He, Wenting, Han, Renmin, Xue, Fudong, Liu, Zhiyong, Zhang, Fa, LippincottSchwartz, Jennifer, Xu, Pingyong. Live cell single molecule-guided Bayesian localization super resolution microscopy. CELL RESEARCHnull. 2017, 27(5): 713-716, https://www.webofscience.com/wos/woscc/full-record/WOS:000400443300014.
[38] Yu Chen, Zihao Wang, Jingrong Zhang, Lun Li, Xiaohua Wan, Fei Sun, Fa Zhang. Accelerating electron tomography reconstruction algorithm ICON with GPU. Biophysics Reports[J]. 2017, 3(1-3): 36-42, http://dx.doi.org/10.1007/s41048-017-0041-z.
[39] Han, Renmin, Wan, Xiaohua, Wang, Zihao, Hao, Yu, Zhang, Jingrong, Chen, Yu, Gao, Xin, Liu, Zhiyong, Ren, Fei, Sun, Fei, Zhang, Fa. AuTom: A novel automatic platform for electron tomography reconstruction. JOURNAL OF STRUCTURAL BIOLOGY[J]. 2017, 199(3): 196-208, http://dx.doi.org/10.1016/j.jsb.2017.07.008.
[40] Wang Zihao, Chen Yu, Zhang Jingrong, Li Lun, Wan Xiaohua, Liu Zhiyong, Sun Fei, Zhang Fa, Cai Z, Daescu O, Li M. Accelerating Electron Tomography Reconstruction Algorithm ICON Using the Intel Xeon Phi Coprocessor on Tianhe-2 Supercomputer. BIOINFORMATICS RESEARCH AND APPLICATIONS (ISBRA 2017)null. 2017, 10330: 258-269, [41] Wan, Xiaohua, Katchalski, Tsvi, Churas, Christopher, Ghosh, Sreya, Phan, Sebastien, Lawrence, Albert, Hao, Yu, Zhou, Ziying, Chen, Ruijuan, Chen, Yu, Zhang, Fa, Ellisman, Mark H. Electron tomography simulator with realistic 3D phantom for evaluation of acquisition, alignment and reconstruction methods. JOURNAL OF STRUCTURAL BIOLOGY[J]. 2017, 198(2): 103-115, http://dx.doi.org/10.1016/j.jsb.2017.04.002.
[42] Chen Yu, Wang Zihao, Li Lun, Wan Xiaohua, Sun Fei, Zhang Fa, Cai Z, Daescu O, Li M. A Fully Automatic Geometric Parameters Determining Method for Electron Tomography. BIOINFORMATICS RESEARCH AND APPLICATIONS (ISBRA 2017)null. 2017, 10330: 385-389, [43] Zhang, Fa, Chen, Yu, Ren, Fei, Wang, Xuan, Liu, Zhiyong, Wan, Xiaohua. A Two-Phase Improved Correlation Method for Automatic Particle Selection in Cryo-EM. IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS[J]. 2017, 14(2): 316-325, https://www.webofscience.com/wos/woscc/full-record/WOS:000399013500010.
[44] Liu, JiaBao, Wang, Yu, Zhang, Fa, Ren, Fei, Liu, LiHeng, He, Wen. Computer-Aided Detection of Pulmonary Nodules in Computed Tomography Images: Effect on Observer Performance. JOURNAL OF MEDICAL IMAGING AND HEALTH INFORMATICS[J]. 2017, 7(6): 1205-1211, https://www.webofscience.com/wos/woscc/full-record/WOS:000412167300012.
[45] Li, Dawei, Wu, Jie, Liu, Zhiyong, Zhang, Fa. Towards the Tradeoffs in Designing Data Center Network Architectures. IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS[J]. 2017, 28(1): 260-273, http://dx.doi.org/10.1109/TPDS.2016.2610970.
[46] Chen, Yu, Zhang, Yan, Zhang, Kai, Deng, Yuchen, Wang, Shengliu, Zhang, Fa, Sun, Fei. FIRT: Filtered iterative reconstruction technique with information restoration. JOURNAL OF STRUCTURAL BIOLOGY[J]. 2016, 195(1): 49-61, http://dx.doi.org/10.1016/j.jsb.2016.04.015.
[47] Zhang Mingzhe, Shi Yangguang, Zhang Fa, Liu Zhiyong, IEEE. COMRANCE: A Rapid Method for Network-on-Chip Design Space Exploration. 2016 SEVENTH INTERNATIONAL GREEN AND SUSTAINABLE COMPUTING CONFERENCE (IGSC)null. 2016, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000402169700005.
[48] Zhou, Biyu, Zhang, Fa, Wang, Lin, Hou, Chenying, Anta, Antonio Fernandez, Vasilakos, Athanasios V, Wang, Youshi, Wu, Jie, Liu, Zhiyong. HDEER: A Distributed Routing Scheme for Energy-Efficient Networking. IEEE JOURNAL ON SELECTED AREAS IN COMMUNICATIONS[J]. 2016, 34(5): 1713-1727, https://www.webofscience.com/wos/woscc/full-record/WOS:000377928600048.
[49] Deng, Yuchen, Chen, Yu, Zhang, Yan, Wang, Shengliu, Zhang, Fa, Sun, Fei. ICON: 3D reconstruction with 'missing-information' restoration in biological electron tomography. JOURNAL OF STRUCTURAL BIOLOGY[J]. 2016, 195(1): 100-112, http://dx.doi.org/10.1016/j.jsb.2016.04.004.
[50] Shan, Hong, Wang, Zihao, Zhang, Fa, Xiong, Yong, Yin, ChangCheng, Sun, Fei. A local-optimization refinement algorithm in single particle analysis for macromolecular complex with multiple rigid modules. PROTEIN & CELL[J]. 2016, 7(1): 46-62, http://lib.cqvip.com/Qikan/Article/Detail?id=667811150.
[51] Han, Renmin, Wang, Liansan, Liu, Zhiyong, Sun, Fei, Zhang, Fa. A novel fully automatic scheme for fiducial marker-based alignment in electron tomography. JOURNAL OF STRUCTURAL BIOLOGY[J]. 2015, 192(3): 403-417, http://dx.doi.org/10.1016/j.jsb.2015.09.022.
[52] Han, Renmin, Wang, Liansan, Xu, Fan, Zhang, Yongdeng, Zhang, Mingshu, Liu, Zhiyong, Ren, Fei, Zhang, Fa. Drift correction for single-molecule imaging by molecular constraint field, a distance minimum metric. BMC BIOPHYSICS[J]. 2015, 8(1): http://dx.doi.org/10.1186/s13628-014-0015-1.
[53] 张静蓉, 万晓华, 张法. 基于曲线投影模型的电子断层三维重构并行算法. 集成技术. 2015, 53-61, http://lib.cqvip.com/Qikan/Article/Detail?id=665101509.
[54] Xu, Fan, Zhang, Mingshu, Liu, Zhiyong, Xu, Pingyong, Zhang, Fa. Bayesian localization microscopy based on intensity distribution of fluorophores. PROTEIN & CELL[J]. 2015, 6(3): 211-220, http://lib.cqvip.com/Qikan/Article/Detail?id=664275938.
[55] Zhou, Ziying, Li, Yugang, Zhang, Fa, Wan, Xiaohua. FASART: An iterative reconstruction algorithm with inter-iteration adaptive NAD filter. BIO-MEDICAL MATERIALS AND ENGINEERING[J]. 2015, 26: S1409-S1415, https://www.webofscience.com/wos/woscc/full-record/WOS:000361671800157.
[56] Fan Xu, Mingshu Zhang, Zhiyong Liu, Pingyong Xu, Fa Zhang. Bayesian localization microscopy based on intensity distribution of fluorophores. 蛋白质与细胞:英文版. 2015, 211-220, http://lib.cqvip.com/Qikan/Article/Detail?id=664275938.
[57] 王璿, 张法, 陈伟. 融合多机器学习方法的siRNA在线设计系统. 燕山大学学报. 2015, 39(5): 458-463, http://lib.cqvip.com/Qikan/Article/Detail?id=667185853.
[58] Zhang, Fa, Zhang, Jingrong, Lawrence, Albert, Ren, Fei, Wang, Xuan, Liu, Zhiyong, Wan, Xiaohua. BSIRT: A Block-Iterative SIRT Parallel Algorithm Using Curvilinear Projection Model. IEEE TRANSACTIONS ON NANOBIOSCIENCE[J]. 2015, 14(2): 229-236, https://www.webofscience.com/wos/woscc/full-record/WOS:000352740200010.
[59] Jin, Xibo, Zhang, Fa, Fan, Liya, Song, Ying, Liu, Zhiyong. Scheduling for energy minimization on restricted parallel processors. JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING[J]. 2015, 81-82: 36-46, http://dx.doi.org/10.1016/j.jpdc.2015.04.001.
[60] Shi, Yangguang, Zhang, Fa, Wu, Jie, Liu, Zhiyong. Randomized oblivious integral routing for minimizing power cost. THEORETICAL COMPUTER SCIENCE[J]. 2015, 607: 221-246, http://dx.doi.org/10.1016/j.tcs.2015.07.007.
[61] Wang, Lin, Zhang, Fa, Arjona Aroca, Jordi, Vasilakos, Athanasios V, Zheng, Kai, Hou, Chenying, Li, Dan, Liu, Zhiyong. GreenDCN: A General Framework for Achieving Energy Efficiency in Data Center Networks. IEEE JOURNAL ON SELECTED AREAS IN COMMUNICATIONS[J]. 2014, 32(1): 4-15, https://www.webofscience.com/wos/woscc/full-record/WOS:000329060000002.
[62] Lin Wang, Fa Zhang, Athanasios V. Vasilakos, Chenying Hou, Zhiyong Liu. Joint virtual machine assignment and traffic engineering for green data center networks. ACM SIGMETRICS Performance Evaluation Review. 2014, 41(3): [63] Han, Renmin, Zhang, Fa, Wan, Xiaohua, Fernandez, JoseJesus, Sun, Fei, Liu, Zhiyong. A marker-free automatic alignment method based on scale-invariant features. JOURNAL OF STRUCTURAL BIOLOGY[J]. 2014, 186(1): 167-180, http://dx.doi.org/10.1016/j.jsb.2014.02.011.
[64] Liu Zhiyong. GreenDCN: a General Framework for Achieving Network Energy Efficiency in Data Centers. IEEE Journal on Selected Areas in Communications (JSAC). 2014, [65] Chenying Hou, Fa Zhang, Antonio Fernndez Anta, Lin Wang, Zhiyong Liu. A hop-by-hop energy efficient distributed routing scheme. ACM SIGMETRICS Performance Evaluation Review. 2014, 41(3): [66] Wang Lin, Zhang Fa, Zheng Kai, Vasilakos Athanasios V, Ren Shaolei, Liu Zhiyong, IEEE. Energy-Efficient Flow Scheduling and Routing with Hard Deadlines in Data Center Networks. 2014 IEEE 34TH INTERNATIONAL CONFERENCE ON DISTRIBUTED COMPUTING SYSTEMS (ICDCS 2014)null. 2014, 248-257, [67] Fa Zhang. A siRNA prediction method combining sequence and secondary structure information using back-propagation neural network. ISBRA2013. 2013, [68] 王功明, 张法, 樊莉亚, 孙飞, 刘志勇. ISAF重构算法密度函数快速计算模型. 中国科学:信息科学[J]. 2013, 584-598, [69] Fa Zhang. Improving the Network Energy Efficiency in MapReduce Systems. ICCCN 2013. 2013, [70] Wan, Xiaohua, Phan, Sebastien, Lawrence, Albert, Zhang, Fa, Han, Renmin, Liu, Zhiyong, Ellisman, Mark. ITERATIVE METHODS IN LARGE FIELD ELECTRON MICROSCOPE TOMOGRAPHY. SIAM JOURNAL ON SCIENTIFIC COMPUTING[J]. 2013, 35(5): S402-S419, http://dx.doi.org/10.1137/120881464.
[71] Renmin Han, Fa Zhang, Zhiyong Liu. A Marker Free Automatic Alignment Method Based on SIFT. 2013, http://kns.cnki.net/KCMS/detail/detail.aspx?QueryID=0&CurRec=1&recid=&FileName=ZGWI201310002001&DbName=IPFD9914&DbCode=IPFD&yx=&pr=&URLID=&bsm=.
[72] Jin Xibo, Zhang Fa, Song Ying, Fan Liya, Liu Zhiyong, Wolf F, Mohr B, Mey DA. Energy-Efficient Scheduling with Time and Processors Eligibility Restrictions. EURO-PAR 2013 PARALLEL PROCESSINGnull. 2013, 8097: 66-77, [73] 王功明, 张法, 樊莉亚, 孙飞, 刘志勇. 基于正弦高斯调制和样条插值的CTF校正模型. 计算机研究与发展[J]. 2013, 50(4): 808-814, http://lib.cqvip.com/Qikan/Article/Detail?id=45305199.
[74] WANG GongMing, ZHANG Fa, CHU Qi, FAN LiYa, SUN Fei, LIU ZhiYong. A fast calculation strategy of density function in ISAF reconstruction algorithm. 中国科学:信息科学(英文版)[J]. 2013, 092116-1, https://www.webofscience.com/wos/woscc/full-record/WOS:000324164600016.
[75] Wang GongMing, Zhang Fa, Chu Qi, Fan LiYa, Sun Fei, Liu ZhiYong. A fast calculation strategy of density function in ISAF reconstruction algorithm. SCIENCE CHINA-INFORMATION SCIENCES[J]. 2013, 56(9): https://www.webofscience.com/wos/woscc/full-record/WOS:000324164600016.
[76] Wan, Xiaohua, Zhang, Fa, Chu, Qi, Liu, Zhiyong. High-performance blob-based iterative three-dimensional reconstruction in electron tomography using multi-GPUs. BMC BIOINFORMATICS[J]. 2012, 13(Suppl 10): S4-S4, http://dx.doi.org/10.1186/1471-2105-13-S10-S4.
[77] Gongming Wang, Fa Zhang, Fei Sun, Zhiyong Liu. An Accelerated ISAF Algorithm with the Fast Mapping Strategy. Journal of Computers. 2012, 7(2): [78] Fan, Liya, Zhang, Fa, Wang, Gongming, Liu, Zhiyong. An effective approximation algorithm for the Malleable Parallel Task Scheduling problem. JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING[J]. 2012, 72(5): 693-704, http://dx.doi.org/10.1016/j.jpdc.2012.01.011.
[79] 张法, Antonio Fernandez Anta, 王林, 侯晨颖, 刘志勇. 网络能耗系统模型及能效算法. 计算机学报[J]. 2012, 35(3): 603-615, http://lib.cqvip.com/Qikan/Article/Detail?id=41534341.
[80] 张阳德, 任菲, 张法, 金鑫. 基于旋转和平移不变性的分子图像识别算法. 中国现代医学杂志[J]. 2012, 22(20): 96-99, http://lib.cqvip.com/Qikan/Article/Detail?id=42973656.
[81] 任菲, 张法, 张阳德. 基于序列与结构域相似性的蛋白质直系同源聚类研究. 中国现代医学杂志[J]. 2012, 15-18, [82] Fa Zhang. Energy-Efficient Network Routing with Discrete Cost Functions. Lecture Notes in Computer Science. 2012, [83] 张法, 孙飞, 储琪, 张凯, 万晓华, 张茨, 张艳, 张广勇, 沈铂, 卢晓伟, 赵开勇, 褚晓文. ATOM 1.0:基于GPU的电子断层重构软件. 生物物理学报[J]. 2011, 27(3): 231-241, http://lib.cqvip.com/Qikan/Article/Detail?id=37670166.
[84] Wan, Xiaohua, Zhang, Fa, Chu, Qi, Zhang, Kai, Sun, Fei, Yuan, Bo, Liu, Zhiyong. Three-dimensional reconstruction using an adaptive simultaneous algebraic reconstruction technique in electron tomography. JOURNAL OF STRUCTURAL BIOLOGY[J]. 2011, 175(3): 277-287, http://dx.doi.org/10.1016/j.jsb.2011.06.002.
[85] 王功明, 张法, 樊莉亚, 孙飞, 刘志勇. ISAF重构算法基函数复杂性分析及解决方案. 计算机辅助设计与图形学学报[J]. 2011, 23(7): 1148-1158, http://lib.cqvip.com/Qikan/Article/Detail?id=38413313.
[86] Wan Xiaohua, Zhang Fa, Chu Qi, Liu Zhiyong, Chen J, Wang JX, Zelikovsky A. High-Performance Blob-Based Iterative Reconstruction of Electron Tomography on Multi-GPUs. BIOINFORMATICS RESEARCH AND APPLICATIONSnull. 2011, 6674: 61-72, [87] 樊莉亚, 张法, 王功明, 刘志勇. 单颗粒重构软件EMAN算法分析与高效并行实现. 计算机研究与发展[J]. 2010, 2165-2176, http://lib.cqvip.com/Qikan/Article/Detail?id=36262105.
[88] 庞善臣, 刘志勇, 尹浩, 袁小群, 林闯, 张法. 内容网络服务节点部署理论综述. 计算机学报[J]. 2010, 1611-1620, http://lib.cqvip.com/Qikan/Article/Detail?id=35221490.
[89] 邵书伟, 张法, 刘金刚. 基于改进的Adaboost冷冻电镜分子图像识别算法. 微计算机信息[J]. 2010, 223-225, http://lib.cqvip.com/Qikan/Article/Detail?id=36297400.
[90] Chu, Qi, Zhang, Fa, Zhang, Kai, Wan, Xiaohua, Chen, Mingwei, Liu, Zhiyong, Park, T, Chen, L, Wong, L, Tsui, S, Ng, M, Hu, X. An accurate, automatic method for markerless alignment of electron tomographic images. 2010 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINEnull. 2010, 393-396, [91] Chen Xiang, Bu DongBo, Zhang Fa, Gao Wen. A Local-stem-search Algorithm to Predict The RNA Secondary Structure. PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS[J]. 2009, 36(1): 115-121, http://www.corc.org.cn/handle/1471x/2403466.
[92] 万晓华, 张法, 刘志勇. 一种冷冻电子断层三维重构的并行迭代算法. 微电子学与计算机[J]. 2009, 101-103,107, http://lib.cqvip.com/Qikan/Article/Detail?id=31167948.
[93] Fan, Liya, Zhang, Fa, Wang, Gongming, Liu, Zhiyong. A framework to refine particle clusters produced by EMAN. BIOINFORMATICS[J]. 2009, 25(12): I276-I280, http://www.corc.org.cn/handle/1471x/2400542.
[94] 王茜, 张法, 李玉岗, 王燕, 邱振戈. 城市小区气象污染模式的并行化研究. 高性能计算技术. 2008, 24-28, http://lib.cqvip.com/Qikan/Article/Detail?id=26718012.
[95] 李玉岗, 张法, 刘志勇. 结合位点进化距离与支持向量机的蛋白质分类方法. 计算机学报[J]. 2008, 31(1): 43-50, http://lib.cqvip.com/Qikan/Article/Detail?id=26315802.
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[97] Zhang Fa, Xu Lin, Liu Zhiyong, Yuan Bo, ACM. Improved Structural Modeling Based on Conserved Domain Clusters and Structure-anchored Alignments. APPLIED COMPUTING 2007, VOL 1 AND 2null. 2007, 128-+, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000268215700026.
[98] Xu Lin, Zhang Fa, Liu Zhiyong, IEEE. A profile-based protein sequence alignment algorithm for a domain clustering database. PROCEEDINGS OF THE 2006 IEEE SYMPOSIUM ON COMPUTATIONAL INTELLIGENCE IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGYnull. 2006, 193-+, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000245066100027.
[99] 张法. Structural Modeling and Characterization of Protein Interaction Network. 2005, [100] 张法, 乔香珍, 刘志勇. 基于Smith-Waterman算法的并行分而治之生物序列比对算法. 中国科学:E辑. 2004, 34(2): 190-199, http://lib.cqvip.com/Qikan/Article/Detail?id=9190895.
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科研活动

   
科研项目
(1) 面向复杂生物数据处理的高效计算方法,参与,国家级,2013-01--2017-12
(2) 大规模数据中心的能耗最小化和资源利用最大化,参与,国家级,2012-01--2014-12
(3) 绿色网络-降低网络能耗的理论与技术,参与,国家级,2011-01--2014-12
参与会议
(1) 分子生物学智能系统国际会议,2009-06

指导学生

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