生物信息大数据

生物信息数据库

高性能计算与云计算

招收具有生物信息、数理或计算机背景的硕士及博士研究生。

081203-计算机应用技术
081202-计算机软件与理论
071010-生物化学与分子生物学

生物信息

2004-02--2006-06   北京航空航天大学   硕士
1997-09--2001-07   西安工业学院   学士

1997年9月-2001年7月 西安工业大学 计算机科学与技术专业 学士学位

2006年2月-2008年6月 北京航空航天大学 计算机应用技术专业 硕士学位

2018-05~现在, 北京基因组研究所, 正高级工程师
2011-12~2018-05,北京基因组研究所, 高级工程师
2008-04~2011-11,北京基因组研究所, 生物信息工程师
2001-07~2004-06,北京华大基因有限公司, 助理工程师

2022-12-15-今,中国档案学会科技档案与科学数据管理学术委员会委员,
2022-10-20-今,国家重点研发计划“生物与信息融合（BT与IT融合）”重点专项专家组成员,
2022-08-06-2027-08-06,中国医药教育协会医学基因组学与生物信息学专业委员会委员,
2022-06-01-今,云南省西南及跨境生物多样性数据信息重点实验室第一届学术委员会委员,

生物信息大数据挖掘分析和实践
生物大数据挖掘、分析与实践技术

（1） 中国科学院关键技术人才, 院级, 2015

[1] 唐碧霞, 赵文明, 朱军伟, 王彦青. 面向生物组学大数据计算的云平台系统及方法. CN: CN106022007B, 2019-03-26.
[2] 孙玉彬, 赵文明. 生物信息学高性能计算作业调度及系统管理套件. CN: CN107273196A, 2017-10-20.

   

[1] Enhui Jin, Dongli Zhao, Gangao Wu, Junwei Zhu, Zhonghuang Wang, Zhiyao Wei, Sisi Zhang, Anke Wang, Bixia Tang, Xu Chen, Yanling Sun, Zhe Zhang, Wenming Zhao, Yuanguang Meng. OBIA: An Open Biomedical Imaging Archive. GENOMICS, PROTEOMICS & BIOINFORMATICS[J]. 2024, http://dx.doi.org/10.1016/j.gpb.2023.09.003.
[2] Hailong Kang, Tianhao Huan, Guangya Duan, Wang, Wenquan, Wenming Zhao. TCOD: an integrated resource for tropical crops. Nucleic Acids Research[J]. 2023, https://doi.org/10.1093/nar/gkad870.
[3] Sun, Yanling, Zheng, Xinchang, Wang, Guoliang, Wang, Yibo, Chen, Xiaoning, Sun, Jiani, Xiong, Zhuang, Zhang, Sisi, Wang, Tianyi, Fan, Zhuojing, Bu, Congfan, Bao, Yiming, Zhao, Wenming. MACdb: A Curated Knowledgebase for Metabolic Associations across Human Cancers. MOLECULAR CANCER RESEARCH[J]. 2023, 21(7): 691-697, http://dx.doi.org/10.1158/1541-7786.MCR-22-0909.
[4] Yibo Wang, Yihao Lin, Sicheng Wu, Bixia Tang, Wenming Zhao. BioKA: a curated and integrated biomarker knowledgebase for animals. Nucleic Acids Research[J]. 2023, https://doi.org/10.1093/nar/gkad873.
[5] Duan, Guangya, Wu, Gangao, Chen, Xiaoning, Tian, Dongmei, Li, Zhaohua, Sun, Yanling, Du, Zhenglin, Hao, Lili, Song, Shuhui, Gao, Yuan, Xiao, Jingfa, Zhang, Zhang, Bao, Yiming, Tang, Bixia, Zhao, Wenming. HGD: an integrated homologous gene database across multiple species. NUCLEIC ACIDS RESEARCH[J]. 2023, 51(D1): D994-D1002, http://dx.doi.org/10.1093/nar/gkac970.
[6] Wenming Zhao, Xue Yongbiao. Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2023. Nucleic Acids Research[J]. 2022, [7] 李茹姣, 张欣, 宋述慧, 王彦青, 邹东, 肖景发, 赵文明, 章张, 鲍一明. 基因组科学数据的安全管理与应用. 大数据[J]. 2022, 8(1): 37-45, http://lib.cqvip.com/Qikan/Article/Detail?id=7106421730.
[8] Zhao, Dongli, Zhang, Zhe, Wang, Zhonghuang, Du, Zhenglin, Wu, Meng, Zhang, Tingting, Zhou, Jialu, Zhao, Wenming, Meng, Yuanguang. Diagnosis and Prediction of Endometrial Carcinoma Using Machine Learning and Artificial Neural Networks Based on Public Databases. GENES[J]. 2022, 13(6): http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000816659200001.
[9] Yu, Dalang, Yang, Xiao, Tang, Bixia, Pan, YiHsuan, Yang, Jianing, Duan, Guangya, Zhu, Junwei, Hao, ZiQian, Mu, Hailong, Dai, Long, Hu, Wangjie, Zhang, Mochen, Cui, Ying, Jin, Tong, Li, CuiPing, Ma, Lina, Su, Xiao, Zhang, Guoqing, Zhao, Wenming, Li, Haipeng, Language Translation Team. Coronavirus GenBrowser for monitoring the transmission and evolution of SARS-CoV-2. BRIEFINGS IN BIOINFORMATICS[J]. 2022, 23(2): http://dx.doi.org/10.1093/bib/bbab583.
[10] Yu, Dalang, Zhu, Junwei, Yang, Jianing, Pan, YiHsuan, Mu, Hailong, Cao, Ruifang, Tang, Bixia, Duan, Guangya, Hao, ZiQian, Dai, Long, Zhao, GuoPing, Zhang, YaPing, Zhao, Wenming, Zhang, Guoqing, Li, Haipeng. Global cold-chain related SARS-CoV-2 transmission identified by pandemic-scale phylogenomics. ZOOLOGICAL RESEARCH[J]. 2022, 43(5): 871-874, http://dx.doi.org/10.24272/j.issn.2095-8137.2022.238.
[11] Chen, Tingting, Chen, Xu, Zhang, Sisi, Zhu, Junwei, Tang, Bixia, Wang, Anke, Dong, Lili, Zhang, Zhewen, Yu, Caixia, Sun, Yanling, Chi, Lianjiang, Chen, Huanxin, Zhai, Shuang, Sun, Yubin, Lan, Li, Zhang, Xin, Xiao, Jingfa, Bao, Yiming, Wang, Yanqing, Zhang, Zhang, Zhao, Wenming. The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types. GENOMICS PROTEOMICS & BIOINFORMATICS[J]. 2021, 19(4): 578-583, http://dx.doi.org/10.1016/j.gpb.2021.08.001.
[12] 李茹姣, 张欣, 宋述慧, 王彦青, 邹东, 肖景发, 赵文明, 章张, 鲍一明. 基因组科学数据的安全管理与应用. 大数据[J]. 2021, 8(1): 37-45, http://lib.cqvip.com/Qikan/Article/Detail?id=7106421730.
[13] Li, Cuiping, Tian, Dongmei, Tang, Bixia, Liu, Xiaonan, Teng, Xufei, Zhao, Wenming, Zhang, Zhang, Song, Shuhui. Genome Variation Map: a worldwide collection of genome variations across multiple species. NUCLEIC ACIDS RESEARCH[J]. 2021, 49(D1): D1186-D1191, http://dx.doi.org/10.1093/nar/gkaa1005.
[14] Chen, Meili, Ma, Yingke, Wu, Song, Zheng, Xinchang, Kang, Hongen, Sang, Jian, Xu, Xingjian, Hao, Lili, Li, Zhaohua, Gong, Zheng, Xiao, Jingfa, Zhang, Zhang, Zhao, Wenming, Bao, Yiming. Genome Warehouse: A Public Repository Housing Genome-scale Data. GENOMICS PROTEOMICS & BIOINFORMATICS[J]. 2021, 19(4): 584-589, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=7184425&detailType=1.
[15] Liu, Yuanming, Wang, Zhonghuang, Wu, Xiaoyuan, Zhu, Junwei, Luo, Hong, Tian, Dongmei, Li, Cuiping, Luo, Jingchu, Zhao, Wenming, Hao, Huaiqing, Jing, HaiChun. SorGSD: updating and expanding the sorghum genome science database with new contents and tools. BIOTECHNOLOGY FOR BIOFUELS[J]. 2021, 14(1): http://dx.doi.org/10.1186/s13068-021-02016-7.
[16] Wang, ZhongHuang, Zhu, QiangHui, Li, Xin, Zhu, JunWei, Tian, DongMei, Zhang, SiSi, Kang, HaiLong, Li, CuiPing, Dong, LiLi, Zhao, WenMing, Li, MengHua. iSheep: an Integrated Resource for Sheep Genome, Variant and Phenotype. FRONTIERS IN GENETICS[J]. 2021, 12: http://dx.doi.org/10.3389/fgene.2021.714852.
[17] Zhang, Yuansheng, Zou, Dong, Zhu, Tongtong, Xu, Tianyi, Chen, Ming, Niu, Guangyi, Zong, Wenting, Pan, Rong, Jing, Wei, Sang, Jian, Liu, Chang, Xiong, Yujia, Sun, Yubin, Zhai, Shuang, Chen, Huanxin, Zhao, Wenming, Xiao, Jingfa, Bao, Yiming, Hao, Lili, Zhang, Zhang. Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels. NUCLEIC ACIDS RESEARCH[J]. 2021, 50(D1): D1016-D1024, http://dx.doi.org/10.1093/nar/gkab878.
[18] 张思思, 陈旭, 陈婷婷, 朱军伟, 唐碧霞, 王安可, 董丽莉, 张哲文, 孙艳玲, 俞彩霞, 翟爽, 孙玉彬, 陈焕新, 杜政霖, 肖景发, 章张, 鲍一明, 王彦青, 赵文明. GSA-Human：人类遗传资源数据管理的公共系统. 遗传[J]. 2021, 43(10): 988-993, http://lib.cqvip.com/Qikan/Article/Detail?id=7105842040.
[19] Wang, Kun, Wang, Jun, Zhu, Chenglong, Yang, Liandong, Ren, Yandong, Ruan, Jue, Fan, Guangyi, Hu, Jiang, Xu, Wenjie, Bi, Xupeng, Zhu, Youan, Song, Yue, Chen, Huatao, Ma, Tiantian, Zhao, Ruoping, Jiang, Haifeng, Zhang, Bin, Feng, Chenguang, Yuan, Yuan, Gan, Xiaoni, Li, Yongxin, Zeng, Honghui, Liu, Qun, Zhang, Yaolei, Shao, Feng, Hao, Shijie, Zhang, He, Xu, Xun, Liu, Xin, Wang, Depeng, Zhu, Min, Zhang, Guojie, Zhao, Wenming, Qiu, Qiang, He, Shunping, Wang, Wen. African lungfish genome sheds light on the vertebrate water-to-land transition. CELL[J]. 2021, 184(5): 1362-1376, http://dx.doi.org/10.1016/j.cell.2021.01.047.
[20] Xue, Yongbiao, Bao, Yiming, Zhang, Zhang, Zhao, Wenming, Xiao, Jingfa, He, Shunmin, Zhang, Guoqing, Li, Yixue, Zhao, Guoping, Chen, Runsheng, Song, Shuhui, Ma, Lina, Zou, Dong, Tian, Dongmei, Li, Cuiping, Zhu, Junwei, Gong, Zheng, Chen, Meili, Wang, Anke, Ma, Yingke, Li, Mengwei, Teng, Xufei, Cui, Ying, Duan, Guangya, Zhang, Mochen, Jin, Tong, Shi, Chengmin, Du, Zhenglin, Zhang, Yadong, Liu, Chuandong, Li, Rujiao, Zeng, Jingyao, Hao, Lili, Jiang, Shuai, Chen, Hua, Han, Dali, Yongbiao, Xue, Zhang, Tao, Kang, Wang, Qu, Jing, Zhang, Weiqi, Liu, GuangHui, Liu, Lin, Zhang, Yang, Niu, Guangyi, Zhu, Tongtong, Feng, Changrui, Liu, Xiaonan, Zhang, Yuansheng, Li, Zhao, Chen, Ruru, Li, Qianpeng, Hua, Zhongyi, Jiang, Chao, Chen, Ziyuan, He, Fangshu, Zhao, Yuyang, Jin, Yan, Huang, Luqi, Yuan, Yuan, Zhou, Chenfen, Xu, Qingwei, He, Sheng, Ye, Wei, Cao, Ruifang, Wang, Pengyu, Ling, Yunchao, Yan, Xing, Wang, Qingzhong, Du, Qiang, Zong, Wenting, Kang, Hongen, Xiong, Zhuang, Huan, Wendi, Zhang, Sirui, Xia, Qiguang, Fan, Xiaojuan, Wang, Zefeng, Chen, Xu, Chen, Tingting, Zhang, Sisi, Tang, Bixia, Dong, Lili, Zhang, Zhewen, Wang, Zhonghuang, Kang, Hailong, Wang, Yanqing, Wu, Song, Wang, Honggen, Chen, Ming, Liu, Chang, Xiong, Yujia, Shao, Xueying, Li, Yanyan, Zhou, Honghong, Chen, Xiaomin, Zheng, Yu, Kang, Quan, Hao, Di, Zhang, Lili, Luo, Huaxia, Hao, Yajing, Zhang, Peng, Nie, Zhi, Yu, Shuhuan, Yang, Fei, Sang, Jian, Li, Zhaohua, Zhang, Xiangquan, Zhou, Qing, Zhai, Shuang, Zhang, Yaping, Wang, Guodong, Zhu, Qianghui, Li, Xin, Li, Menghua, Yan, Jun, Li, Chen, Wang, Zhennan, Wang, Xiangfeng, Liu, Yuanming, Luo, Hong, Wu, Xiaoyuan, Jing, HaiChun, Song, Tinrui, Zhao, Yi, Mehmood, Furrukh, Ali, Shahid, Ali, Amjad, Saleem, Shoaib, Hussain, Irfan, Abbasi, Amir A, Zuo, Zhixiang, Ren, Jian, Zhang, Xinxin, Xiao, Yun, Li, Xia, Tu, Yiran, Xue, Yu, Wu, Wanying, Ji, Peifeng, Zhao, Fangqing, Meng, Xianwen, Peng, Di, Luo, Hao, Gao, Feng, Ning, Wanshan, Lin, Shaofeng, Liu, Teng, Guo, AnYuan, Yuan, Hao, Zhang, Yong E, Tan, Xiaodan, Zhang, Weizhi, Xie, Yubin, Wang, Chenwei, Liu, ChunJie, Yang, DeChang, Tian, Feng, Gao, Ge, Tang, Dachao, Yao, Lan, Cui, Qinghua, An, Ni A, Li, ChuanYun, Luo, XiaoTong. Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. NUCLEIC ACIDS RESEARCH[J]. 2021, 49(D1): D18-D28, http://dx.doi.org/10.1093/nar/gkaa1022.
[21] Gong, Zheng, Zhu, JunWei, Li, CuiPing, Jiang, Shuai, Ma, LiNa, Tang, BiXia, Zou, Dong, Chen, MeiLi, Sun, YuBin, Song, ShuHui, Zhang, Zhang, Xiao, JingFa, Xue, YongBiao, Bao, YiMing, Du, ZhengLin, Zhao, WenMing. An online coronavirus analysis platform from the National Genomics Data Center. ZOOLOGICAL RESEARCH[J]. 2020, 41(6): 705-708, http://lib.cqvip.com/Qikan/Article/Detail?id=7103487080.
[22] Qi Liu, Shilei Zhao, ChengMin Shi, Shuhui Song, Sihui Zhu, Yankai Su, Wenming Zhao, Mingkun Li, Yiming Bao, Yongbiao Xue, Hua Chen, 陈华. Population Genetics of SARS-CoV-2: Disentangling Effects of Sampling Bias and Infection Clusters. GENOMICS, PROTEOMICS & BIOINFORMATICS[J]. 2020, [23] 赵文明, 宋述慧, 陈梅丽, 邹东, 马利娜, 马英克, 李茹姣, 郝丽丽, 李翠萍, 田东梅, 唐碧霞, 王彦青, 朱军伟, 陈焕新, 章张, 薛勇彪, 鲍一明. 2019新型冠状病毒信息库. 遗传[J]. 2020, 42(2): 212-221, https://kns.cnki.net/KCMS/detail/detail.aspx?dbcode=CJFQ&dbname=CJFDLAST2020&filename=YCZZ202002009&v=MjI0MDZZUzdEaDFUM3FUcldNMUZyQ1VSN3FlWitkcUZDam5XN3pPUEM3UmRMRzRITkhNclk5RmJZUjhlWDFMdXg=.
[24] Zhang, Zhang, Zhao, Wenming, Xiao, Jingfa, Bao, Yiming, He, Shunmin, Zhang, Guoqing, Li, Yixue, Zhao, Guoping, Chen, Runsheng, Gao, Yang, Zhang, Chao, Yuan, Liyun, Xu, Shuhua, Ning, Zhilin, Lu, Yan, Zeng, Jingyao, Yuan, Na, Zhu, Junwei, Pan, Mengyu, Zhang, Hao, Wang, Qi, Shi, Shuo, Jiang, Meiye, Lu, Mingming, Qian, Qiheng, Gao, Qianwen, Shang, Yunfei, Wang, Jinyue, Du, Zhenglin, Tian, Dongmei, Wang, Pei, Tang, Bixia, Li, Cuiping, Teng, Xufei, Liu, Xiaonan, Zou, Dong, Song, Shuhui, Xiong, Zhuang, Li, Mengwei, Yang, Fei, Ma, Yingke, Sang, Jian, Li, Zhaohua, Li, Rujiao, Wang, Zhonghuang, Zhu, Qianghui, Li, Xin, Zhang, Sisi, Kang, Hailong, Dong, Lili, Ying, Cui, Duan, Guangya, Li, Menghua, Zhi, Xiaoyang, Ling, Yunchao, Cao, Ruifang, Jiang, Zhao, Zhou, Haokui, Lv, Daqing, Liu, Wan, Klenk, HansPeter, Zhang, Yadong, Zhang, Zhewen, Chen, Tingting, Chen, Xu, Wang, Yanqing, Wu, Song, Gong, Zheng, Chen, Meili, Fang, Shuangsang, Zhang, Lili, Guo, Jincheng, Niu, Yiwei, Wu, Yang, Li, Hui, Zhao, Lianhe, Li, Xiyuan, Teng, Xueyi, Sun, Xianhui, Sun, Liang, Zhao, Yi, Wang, Jiajia, Zhang, Peng, Li, Yanyan, Zheng, Yu, Chen, Xiaomin, Xue, Hua, Teng, Yiheng, Kang, Quan, Hao, Yajing, Cao, Jiabao, Liu, Lin, Li, Zhao, Li, Qianpeng, Du, Qiang, Abbasi, Amir A, Shireen, Huma, Pervaiz, Nashaiman, Batool, Fatima, Raza, Rabail Z, Ma, Lina, Niu, Guangyi, Zhang, Yuansheng, Zhu, Tongtong, Hao, Lili, Wang, Guoliang, Yan, Jun, Li, Chen, Wang, Zhennan, Wang, Xiangfeng, Li, Zhonghai, Zhang, Yang, Wang, Houling, Zhang, Yi, Xia, Xinli, Guo, Hongwei, Zhu, Junwen, Zhou, Qing, Kang, Hongen, Lan, Li, Zhang, Xin, Xue, Yongbiao, Sun, Yubin, Zhai, Shuang, Yu, Lei, Sun, Mingyuan, Chen, Huanxin, Hu, Hui, Guo, AnYuan, Lin, Shaofeng, Xue, Yu, Wang, Chenwei, Ning, Wanshan, Zhang, Xinxin, Xiao, Yun, Li, Xia, Tu, Yiran, Wu, Wanying, Ji, Peifeng, Zhao, Fangqing, Luo, Hao, Gao, Feng, Guo, Yaping, Yuan, Hao, Zhang, Yong E, Zhang, Qiong, Zhou, Jiaqi, Huang, Zhou, Cui, Qinghua, Miao, YaRu, Ruan, Chen, Yuan, Chunhui, Chen, Ming, Jin, JinPu, Tian, Feng, Gao, Ge, Shi, Ying, Yao, Lan, Li, Xiangshang, Li, ChuanYun, Tang, Qing, Peng, Di. Database Resources of the National Genomics Data Center in 2020. NUCLEIC ACIDS RESEARCH[J]. 2020, 48(D1): D24-D33, https://www.webofscience.com/wos/woscc/full-record/WOS:000525956700004.
[25] Zhang, Zhang, Song, Shuhui, Yu, Jun, Zhao, Wenming, Xiao, Jingfa, Bao, Yiming. The Elements of Data Sharing. GENOMICS PROTEOMICS & BIOINFORMATICS[J]. 2020, 18(1): 1-4, http://lib.cqvip.com/Qikan/Article/Detail?id=00002HUHLL7G7JP0MPDO8JP1MNR.
[26] Song, Shuhui, Ma, Lina, Zou, Dong, Tian, Dongmei, Li, Cuiping, Zhu, Junwei, Chen, Meili, Wang, Anke, Ma, Yingke, Li, Mengwei, Teng, Xufei, Cui, Ying, Duan, Guangya, Zhang, Mochen, Jin, Tong, Shi, Chengmin, Du, Zhenglin, Zhang, Yadong, Liu, Chuandong, Li, Rujiao, Zeng, Jingyao, Hao, Lili, Jiang, Shuai, Chen, Hua, Han, Dali, Xiao, Jingfa, Zhang, Zhang, Zhao, Wenming, Xue, Yongbiao, Bao, Yiming. The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR. GENOMICS PROTEOMICS & BIOINFORMATICS[J]. 2020, 18(6): 749-759, http://dx.doi.org/10.1016/j.gpb.2020.09.001.
[27] Zhao, Yongbing, Wang, Jinyue, Liang, Fang, Liu, Yanxia, Wang, Qi, Zhang, Hao, Jiang, Meiye, Zhang, Zhewen, Zhao, Wenming, Bao, Yiming, Zhang, Zhang, Wu, Jiayan, Asmann, Yan W, Li, Rujiao, Xiao, Jingfa. NucMap: a database of genome-wide nucleosome positioning map across species. NUCLEIC ACIDS RESEARCH[J]. 2019, 47(D1): D163-D169, [28] Tang, Bixia, Zhou, Qing, Dong, Lili, Li, Wulue, Zhang, Xiangquan, Lan, Li, Zhai, Shuang, Xiao, Jingfa, Zhang, Zhang, Bao, Yiming, Zhang, YaPing, Wang, GuoDong, Zhao, Wenming. iDog: an integrated resource for domestic dogs and wild canids. NUCLEIC ACIDS RESEARCH[J]. 2019, 47(D1): D793-D800, http://dx.doi.org/10.1093/nar/gky1041.
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已指导学生

周晴  硕士研究生  085211-计算机技术  

王钟凰  硕士研究生  085211-计算机技术  

康海龙  硕士研究生  085238-生物工程  

张亚东  博士研究生  0710J3-生物信息学  

现指导学生

金恩慧  硕士研究生  0710Z1-基因组学  

吴港澳  硕士研究生  0710Z1-基因组学  

黄天昊  硕士研究生  0710J3-生物信息学  

王钟凰  博士研究生  0710J3-生物信息学  

陈潇宁  硕士研究生  0710J3-生物信息学  

王钇博  硕士研究生  0710J3-生物信息学  

康海龙  博士研究生  0710J3-生物信息学  

段光亚  博士研究生  0710J3-生物信息学  

林毅豪  硕士研究生  0710J3-生物信息学  

孙佳尼  硕士研究生  0710J3-生物信息学