基本信息
孔宏智  男  博导  中国科学院植物研究所
电子邮件: hzkong@ibcas.ac.cn
通信地址: 北京市海淀区香山南辛村20号
邮政编码: 100093

研究领域

进化发育生物学、调控基因组学

招生信息

   
招生专业
071001-植物学
071022-基因组学
071023-计算生物学
招生方向
进化发育生物学

教育背景

1995-09--2000-07   中国科学院植物研究所   博士
1991-09--1995-07   西北大学生物学系   学士
学历
-- 研究生
学位
-- 博士

工作经历

2012.11至今      中国科学院植物研究所,任“系统学与进化发育”研究群领衔科学家
2011.08至今      中国科学院植物研究所,任系统与进化植物学国家重点实验室副主任
2008.07至今      中国科学院植物研究所,任“进化发育与调控基因组学”研究组组长
2007.06至今      中国科学院植物研究所,任博士生导师
2006.12至今      中国科学院植物研究所,任研究员
2006.06 – 2006.08  美国宾夕法尼亚州立大学,任高级访问学者
2002.04 – 2004.10  美国宾夕法尼亚州立大学,任访问学者、博士后
2003.10 – 2006.12  中国科学院植物研究所,任副研究员
2000.08 – 2003.10  中国科学院植物研究所,任助理研究员

工作简历
2000-07~2016-06,中国科学院植物研究所, 助理研究员、副研究员、研究员
社会兼职
2014-10-27-今,《Molecular Biology and Evolution》期刊, Associate Editor
2013-12-30-今,《科技导报》, 编委
2013-12-29-今,上海市资源植物功能基因组学重点实验室学术委员会, 委员
2012-12-30-今,《Journal of Genetics and Genomics》期刊, Associate Editor
2011-12-30-今,《Plant Systematics and Evolution》期刊, Associate Editor
2011-12-30-今,中国细胞生物学会植物器官发生分会, 委员
2011-12-30-今,中国细胞生物学会染色体、基因组和蛋白质组分会, 委员
2010-12-30-今,中国科学院植物研究所学术委员会, 委员
2010-12-30-今,系统与进化植物学国家重点实验室学术委员会, 委员
2010-12-30-今,《Frontiers in Plant Evolution and Development》期刊, Review Editor
2010-10-30-今,《New Phytologist》期刊, Editor
2009-07-30-今,《生物多样性》期刊, 副主编
2009-07-30-今,《植物学报》期刊, 编委
2007-12-30-今,复旦大学植物科学研究所学术委员会, 委员
2007-12-30-今,中国植物学会植物分类与系统进化专业委员会, 委员
2007-12-30-2013-12-29,中国植物学会青年工作委员会, 委员

教授课程

进化发育生物学
植物发育生物学
植物学前沿专题
植物的起源和系统发育

专利与奖励

   
奖励信息
(1) “万人计划”科技创新领军人才, 部委级, 2016
(2) 全国优秀科技工作者, 国家级, 2014
(3) 中青年科技创新领军人才, 部委级, 2014
(4) 中国青年科技奖, 国家级, 2013
(5) 中国科学院青年科学家奖, 院级, 2012
(6) 国家杰出青年科学基金, 国家级, 2011

出版信息

   
发表论文
[1] Yuan, Yi, Li, Xuan, Yao, Xu, Fu, Xuehao, Cheng, Jie, Shan, Hongyan, Yin, Xiaofeng, Kong, Hongzhi. Mechanisms underlying the formation of complex color patterns on Nigella orientalis (Ranunculaceae) petals. NEW PHYTOLOGIST[J]. 2023, 237(6): 2450-2466, http://dx.doi.org/10.1111/nph.18681.
[2] Cheng, Jie, Yao, Xu, Li, Xukun, Yue, Liang, Duan, Xiaoshan, Li, Boka, Fu, Xuehao, Li, Shuixian, Shan, Hongyan, Yin, Xiaofeng, Whitewoods, Christopher, Coen, Enrico, Kong, Hongzhi. Diversification of ranunculaceous petals in shape supports a generalized model for plant lateral organ morphogenesis and evolution. SCIENCE ADVANCES[J]. 2023, 9(16): eadf8049-, https://www.science.org/doi/10.1126/sciadv.adf8049.
[3] Zhao, Huiqi, Liao, Hong, Li, Shuixian, Zhang, Rui, Dai, Jing, Ma, Pengrui, Wang, Tianpeng, Wang, Meimei, Yuan, Yi, Fu, Xuehao, Cheng, Jie, Duan, Xiaoshan, Xie, Yanru, Zhang, Peng, Kong, Hongzhi, Shan, Hongyan. Delphinieae flowers originated from the rewiring of interactions between duplicated and diversified floral organ identity and symmetry genes. PLANT CELL[J]. 2023, [4] Fu, Xuehao, Shan, Hongyan, Yao, Xu, Cheng, Jie, Jiang, Yongchao, Yin, Xiaofeng, Kong, Hongzhi. Petal development and elaboration. JOURNAL OF EXPERIMENTAL BOTANY[J]. 2022, 73(11): 3308-3318, https://academic.oup.com/jxb/article/73/11/3308/6547097.
[5] 薛成, 李波卡, 雷天宇, 山红艳, 孔宏智. 生物多样性起源与进化研究进展. 生物多样性[J]. 2022, 30(10): 34-47, http://lib.cqvip.com/Qikan/Article/Detail?id=7108625089.
[6] Shan, Hongyan, Kong, Hongzhi. The genome of Ginkgo biloba refined. NATURE PLANTS[J]. 2021, 7(6): 714-715, [7] Liuyu Qin, Yiheng Hu, Jinpeng Wang, Xiaoliang Wang, Ran Zhao, Hongyan Shan, Kunpeng Li, Peng Xu, Hanying Wu, Xueqing Yan, Lumei Liu, Xin Yi, Stefan Wanke, John E Bowers, James H LeebensMack, Claude W dePamphilis, Pamela S Soltis, Douglas E Soltis, Hongzhi Kong, Yuannian Jiao. Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome. NATURE PLANTS[J]. 2021, 7(9): 1239-1253, [8] Liao, Hong, Fu, Xuehao, Zhao, Huiqi, Cheng, Jie, Zhang, Rui, Yao, Xu, Duan, Xiaoshan, Shan, Hongyan, Kong, Hongzhi. The morphology, molecular development and ecological function of pseudonectaries on Nigella damascena (Ranunculaceae) petals. NATURE COMMUNICATIONS[J]. 2020, 11(1): [9] Jinghe Xie, Haifeng Zhao, Kunpeng Li, Rui Zhang, Yongchao Jiang, Meimei Wang, Xuelian Guo, Ben Yu, Hongzhi Kong, Yuannian Jiao, Guixia Xu. A chromosome-scale reference genome of Aquilegia oxysepala var. kansuensis. HORTICULTURE RESEARCH[J]. 2020, 7(1): 1413-1425, http://dx.doi.org/10.1038/s41438-020-0328-y.
[10] Zhang, Liangsheng, Chen, Fei, Zhang, Xingtan, Li, Zhen, Zhao, Yiyong, Lohaus, Rolf, Chang, Xiaojun, Dong, Wei, Ho, Simon Y W, Liu, Xing, Song, Aixia, Chen, Junhao, Guo, Wenlei, Wang, Zhengjia, Zhuang, Yingyu, Wang, Haifeng, Chen, Xuequn, Hu, Juan, Liu, Yanhui, Qin, Yuan, Wang, Kai, Dong, Shanshan, Liu, Yang, Zhang, Shouzhou, Yu, Xianxian, Wu, Qian, Wang, Liangsheng, Yan, Xueqing, Jiao, Yuannian, Kong, Hongzhi, Zhou, Xiaofan, Yu, Cuiwei, Chen, Yuchu, Li, Fan, Wang, Jihua, Chen, Wei, Chen, Xinlu, Jia, Qidong, Zhang, Chi, Jiang, Yifan, Zhang, Wanbo, Liu, Guanhua, Fu, Jianyu, Chen, Feng, Ma, Hong, Van de Peer, Yves, Tang, Haibao. The water lily genome and the early evolution of flowering plants. NATURE[J]. 2020, 577(7788): 79-+, http://dx.doi.org/10.1038/s41586-019-1852-5.
[11] Zhang, Jian, Fu, XinXing, Li, RuiQi, Zhao, Xiang, Liu, Yang, Li, MingHe, Zwaenepoel, Arthur, Ma, Hong, Goffinet, Bernard, Guan, YanLong, Xue, JiaYu, Liao, YiYing, Wang, QingFeng, Wang, QingHua, Wang, JieYu, Zhang, Guo Qiang, Wang, ZhiWen, Jia, Yu, Wang, MeiZhi, Dong, ShanShan, Yang, JianFen, Jiao, YuanNian, Guo, YaLong, Kong, HongZhi, Lu, AnMing, Yang, HuanMing, Zhang, ShouZhou, Van de Peer, Yves, Liu, ZhongJian, Chen, ZhiDuan. The hornwort genome and early land plant evolution. NATURE PLANTS[J]. 2020, 6(2): 107-118, https://www.webofscience.com/wos/woscc/full-record/WOS:000512529000001.
[12] Zhang, Rui, Fu, Xuehao, Zhao, Caiyao, Cheng, Jie, Liao, Hong, Wang, Peipei, Yao, Xu, Duan, Xiaoshan, Yuan, Yi, Xu, Guixia, Kramer, Elena M, Shan, Hongyan, Kong, Hongzhi. Identification of the Key Regulatory Genes Involved in Elaborate Petal Development and Specialized Character Formation in Nigella damascena (Ranunculaceae)(OPEN). PLANT CELL[J]. 2020, 32(10): 3095-3112, http://dx.doi.org/10.1105/tpc.20.00330.
[13] Duan, Xiaoshan, Zhao, Caiyao, Jiang, Yongchao, Zhang, Rui, Shan, Hongyan, Kong, Hongzhi. Parallel evolution of apetalous lineages within the buttercup family (Ranunculaceae): outward expansion ofAGAMOUS1, rather than disruption ofAPETALA3-3. PLANT JOURNAL[J]. 2020, 104(5): 1169-1181, http://dx.doi.org/10.1111/tpj.14985.
[14] 孔宏智. Identification of the target genes of AqAPETALA3-3 (AqAP3-3) in Aquilegia coerulea (Ranunculaceae) helps understand the molecular bases of the conserved and nonconserved features of petals. New Phytologist. 2020, [15] Zhang, Rui, Min, Ya, Holappa, Lynn D, WalcherChevillet, Cristina L, Duan, Xiaoshan, Donaldson, Emily, Kong, Hongzhi, Kramer, Elena M. A role for the Auxin Response Factors ARF6 and ARF8 homologs in petal spur elongation and nectary maturation in Aquilegia. NEW PHYTOLOGIST[J]. 2020, 227(5): 1392-1405, http://dx.doi.org/10.1111/nph.16633.
[16] Liao, Hong, Fu, Xuehao, Zhao, Huiqi, Cheng, Jie, Zhang, Rui, Yao, Xu, Duan, Xiaoshan, Shan, Hongyan, Kong, Hongzhi. The morphology, molecular development and ecological function of pseudonectaries on Nigella damascena (Ranunculaceae) petals (vol 11, 1777, 2020). NATURE COMMUNICATIONSnull. 2020, 11(1): https://www.webofscience.com/wos/woscc/full-record/WOS:000558813200002.
[17] Jiang, Yongchao, Wang, Meimei, Zhang, Rui, Xie, Jinghe, Duan, Xiaoshan, Shan, Hongyan, Xu, Guixia, Kong, Hongzhi. Identification of the target genes of AqAPETALA3-3 (AqAP3-3) in Aquilegia coerulea (Ranunculaceae) helps understand the molecular bases of the conserved and nonconserved features of petals. NEW PHYTOLOGIST[J]. 2020, 227(4): 1235-1248, http://dx.doi.org/10.1111/nph.16601.
[18] Liu, PingLi, Zhang, Xi, Mao, JianFeng, Hong, YanMing, Zhang, RenGang, Yilan, E, Nie, Shuai, Jia, Kaihua, Jiang, ChenKun, He, Jian, Shen, Weiwei, He, Qizouhong, Zheng, Wenqing, Abbas, Samar, Jewaria, Pawan Kumar, Tian, Xuechan, Liu, Changjun, Jiang, Xiaomei, Yin, Yafang, Liu, Bo, Wang, Li, Jin, Biao, Ma, Yongpeng, Qiu, Zongbo, Baluska, Frantisek, Samaj, Jozef, He, Xinqiang, Niu, Shihui, Xie, Jianbo, Xie, Lei, Xu, Huimin, Kong, Hongzhi, Ge, Song, Dixon, Richard A, Jiao, Yuannian, Lin, Jinxing. The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements. GENOME BIOLOGY[J]. 2020, 21(1): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7709256/.
[19] Zhai, Wei, Duan, Xiaoshan, Zhang, Rui, Guo, Chunce, Li, Lin, Xu, Guixia, Shan, Hongyan, Kong, Hongzhi, Ren, Yi. Chloroplast genomic data provide new and robust insights into the phylogeny and evolution of the Ranunculaceae. MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2019, 135: 12-21, http://dx.doi.org/10.1016/j.ympev.2019.02.024.
[20] Shan, Hongyan, Cheng, Jie, Zhang, Rui, Yao, Xu, Kong, Hongzhi. Developmental mechanisms involved in the diversification of flowers. NATURE PLANTS[J]. 2019, 5(9): 917-923, http://dx.doi.org/10.1038/s41477-019-0498-5.
[21] Yao, Xu, Zhang, Wengen, Duan, Xiaoshan, Yuan, Yi, Zhang, Rui, Shan, Hongyan, Kong, Hongzhi. The making of elaborate petals in Nigella through developmental repatterning. NEW PHYTOLOGIST[J]. 2019, 223(1): 385-396, [22] 王宏哲, 张睿, 程劼, 段晓姗, 赵慧琪, 山红艳, 孔宏智. 花基本结构的多样性及其分子机制. 中国科学:生命科学[J]. 2019, 292-300, https://www.sciengine.com/doi/10.1360/N052018-00219.
[23] Zhang, Luoyan, Kong, Hongzhi, Ma, Hong, Yang, Ji. Phylogenomic detection and functional prediction of genes potentially important for plant meiosis. GENE[J]. 2018, 643: 83-97, http://dx.doi.org/10.1016/j.gene.2017.12.005.
[24] 陈凡, 钱前, 王台, 董爱武, 漆小泉, 左建儒, 杨淑华, 林荣呈, 萧浪涛, 顾红雅, 陈之端, 姜里文, 白永飞, 孔宏智, 种康. 2017年中国植物科学若干领域重要研究进展. 植物学报[J]. 2018, 53(4): 391-440, https://nxgp.cnki.net/kcms/detail?dbcode=CJFQ&dbname=CJFDLAST2018&filename=ZWXT201804001&v=MjkxMDNUZXJHNEg5bk1xNDlGWllSOGVYMUx1eFlTN0RoMVQzcVRyV00xRnJDVVI3cWVaZVJuRkN2bFVyL0xQenI=.
[25] Alex Harkess, Jinsong Zhou, Chunyan Xu, John E Bowers, Ron Van der Hulst, Saravanaraj Ayyampalayam, Francesco Mercati, Paolo Riccardi, Michael R McKain, Atul Kakrana, Haibao Tang, Jeremy Ray, John Groenendijk, Siwaret Arikit, Sandra M Mathioni, Mayumi Nakano, Hongyan Shan, Alexa TelgmannRauber, Akira Kanno, Zhen Yue, Haixin Chen, Wenqi Li, Yanling Chen, Xiangyang Xu, Yueping Zhang, Shaochun Luo, Helong Chen, Jianming Gao, Zichao Mao, J Chris Pires, Meizhong Luo, Dave Kudrna, Rod A Wing, Blake C Meyers, Kexian Yi, Hongzhi Kong, Pierre Lavrijsen, Francesco Sunseri, Agostino Falavigna, Yin Ye, James H LeebensMack, Guangyu Chen. The asparagus genome sheds light on the origin and evolution of a young Y chromosome. NATURE COMMUNICATIONS[J]. 2017, 8(1): http://ir.ibcas.ac.cn/handle/2S10CLM1/15450.
[26] 山红艳, 孔宏智. 花是如何起源的?. 科学通报[J]. 2017, 62(21): 2323-2334, [27] Huang, Jian, Li, Zhiyong, Biener, Gabriel, Xiong, Erhui, Malik, Shikha, Eaton, Nathan, Zhao, Catherine Z, Raicu, Valerica, Kong, Hongzhi, Zhao, Dazhong. Carbonic Anhydrases Function in Anther Cell Differentiation Downstream of the Receptor-Like Kinase EMS1. PLANT CELL[J]. 2017, 29(6): 1335-1356, http://ir.ibcas.ac.cn/handle/2S10CLM1/15466.
[28] Kramer, Elena M, Kong, Hongzhi, Rausher, Mark D. Plant evolutionary developmental biology. Introduction to a special issue. NEW PHYTOLOGIST. 2017, 216(2): 335-336, https://www.webofscience.com/wos/woscc/full-record/WOS:000427294000001.
[29] 王小菁, 萧浪涛, 董爱武, 王台, 钱前, 漆小泉, 陈凡, 左建儒, 杨淑华, 顾红雅, 陈之端, 姜里文, 白永飞, 孔宏智, 种康. 2016年中国植物科学若干领域重要研究进展. 植物学报[J]. 2017, 52(4): 394-452, https://nxgp.cnki.net/kcms/detail?v=3uoqIhG8C44YLTlOAiTRKibYlV5Vjs7iAEhECQAQ9aTiC5BjCgn0RvHvmHSIwyanIMNe3ShUg3vFPWgu8uJpZbL79tBo7mME&uniplatform=NZKPT.
[30] Wang, Peipei, Liao, Hong, Zhang, Wengen, Yu, Xianxian, Zhang, Rui, Shan, Hongyan, Duan, Xiaoshan, Yao, Xu, Kong, Hongzhi. Flexibility in the structure of spiral flowers and its underlying mechanisms. NATURE PLANTS[J]. 2016, 2(1): http://ir.ibcas.ac.cn/handle/2S10CLM1/12228.
[31] 杨淑华, 王台, 钱前, 王小菁, 左建儒, 顾红雅, 姜里文, 陈之端, 白永飞, 孔宏智, 陈凡, 萧浪涛, 董爱武, 种康. 2015年中国植物科学若干领域重要研究进展. 植物学报[J]. 2016, 51(4): 416-472, https://kns.cnki.net/KCMS/detail/detail.aspx?dbcode=CJFQ&dbname=CJFDLAST2016&filename=ZWXT201604002&v=MDMzNzJxNDlGWm9SOGVYMUx1eFlTN0RoMVQzcVRyV00xRnJDVVI3cWVaZVZ1Rnlqa1dyekFQenJUZXJHNEg5Zk0=.
[32] Yu, Xianxian, Duan, Xiaoshan, Zhang, Rui, Fu, Xuehao, Ye, Lingling, Kong, Hongzhi, Xu, Guixia, Shan, Hongyan. Prevalent Exon-Intron Structural Changes in the APETALA1/FRUITFULL, SEPALLATA, AGAMOUS-LIKE6, and FLOWERING LOCUS C MADS-Box Gene Subfamilies Provide New Insights into Their Evolution. FRONTIERS IN PLANT SCIENCE[J]. 2016, 7(-): http://ir.ibcas.ac.cn/handle/2S10CLM1/12373.
[33] Lingling Ye, Bin Wang, Wengen Zhang, Hongyan Shan, Hongzhi Kong. Gains and Losses of Cis-regulatory Elements Led to Divergence of the Arabidopsis APETALA1 and CAULIFLOWER Duplicate Genes in the Time, Space, and Level of Expression and Regulation of One Paralog by the Other 1 OPEN. PLANT PHYSIOLOGY. 2016, 171(2): 1055-1069, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4902614/.
[34] 孔宏智. 生物多样性事业呼唤对物种概念和物种划分标准的深度讨论. 生物多样性[J]. 2016, 24(9): 977-978, http://lib.cqvip.com/Qikan/Article/Detail?id=670306371.
[35] 种康, 王台, 钱前, 王小菁, 左建儒, 顾红雅, 姜里文, 陈之端, 白永飞, 杨淑华, 孔宏智, 陈凡, 萧浪涛. 2014年中国植物科学若干领域重要研究进展. 植物学报[J]. 2015, 50(4): 412-459, [36] Li, Lin, Yu, XianXian, Guo, ChunCe, Duan, XiaoShan, Shan, HongYan, Zhang, Rui, Xu, GuiXia, Kong, HongZhi. Interactions among proteins of floral MADS-box genes in Nuphar pumila (Nymphaeaceae) and the most recent common ancestor of extant angiosperms help understand the underlying mechanisms of the origin of the flower. JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2015, 53(4): 285-296, http://dx.doi.org/10.1111/jse.12148.
[37] Zeng, Liping, Zhang, Qiang, Sun, Renran, Kong, Hongzhi, Zhang, Ning, Ma, Hong. Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. NATURE COMMUNICATIONS[J]. 2014, 5(-): http://ir.ibcas.ac.cn/handle/2S10CLM1/12167.
[38] Li, Hao, Meng, Fanrui, Guo, Chunce, Wang, Yingxiang, Xie, Xiaojing, Zhu, Tiansheng, Zhou, Shuigeng, Ma, Hong, Shan, Hongyan, Kong, Hongzhi. MeioBase: acomprehensive database for meiosis. FRONTIERS IN PLANT SCIENCE[J]. 2014, 5(728): https://doaj.org/article/80a9e9b6d5f74faa9fdf6ba61b439141.
[39] 袁明, 瞿礼嘉, 王小菁, 钱前, 杨维才, 王台, 孔宏智, 蒋高明, 种康. 2013年中国植物科学若干领域重要研究进展. 植物学报[J]. 2014, 49(4): 347-406, https://d.wanfangdata.com.cn/periodical/zwxtb201404001.
[40] 孔宏智. 从基因组到多样性. 生物多样性[J]. 2014, 22(1): 1-3, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=5051161&detailType=1.
[41] Jia, RuiDong, Guo, ChunCe, Xu, GuiXia, Shan, HongYan, Kong, HongZhi. Evolution of the cyclin gene family in plants. JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2014, 52(5): 651-659, http://ir.ibcas.ac.cn/handle/2S10CLM1/12232.
[42] 张睿, 国春策, 山红艳, 孔宏智. 发育重塑与生物多样性. 生物多样性[J]. 2014, 22(1): 66-71, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=5051166&detailType=1.
[43] 国春策, 张睿, 山红艳, 孔宏智. 调控进化与形态多样性. 生物多样性[J]. 2014, 22(1): 72-79, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=5051167&detailType=1.
[44] 钱前, 瞿礼嘉, 袁明, 王小菁, 杨维才, 王台, 孔宏智, 蒋高明, 种康. 2012年中国植物科学若干领域重要研究进展. 植物学报[J]. 2013, 48(3): 231-287, http://lib.cqvip.com/Qikan/Article/Detail?id=46287133.
[45] Zhang, Rui, Guo, Chunce, Zhang, Wengen, Wang, Peipei, Li, Lin, Duan, Xiaoshan, Du, Qinggao, Zhao, Liang, Shan, Hongyan, Hodges, Scott A, Kramer, Elena M, Ren, Yi, Kong, Hongzhi. Disruption of the petal identity gene APETALA3-3 is highly correlated with loss of petals within the buttercup family (Ranunculaceae). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2013, 110(13): 5074-5079, http://ir.ibcas.ac.cn/handle/2S10CLM1/16987.
[46] Kahloul, Senda, El Beji, Imen HajSalah, Boulaflous, Aurelia, Ferchichi, Ali, Kong, Hongzhi, Mouzeyar, Said, Bouzidi, Mohamed Fouad. Structural, Expression and Interaction Analysis of Rice SKP1-Like Genes. DNA RESEARCH[J]. 2013, 20(1): 67-78, http://dx.doi.org/10.1093/dnares/dss034.
[47] Wang, Bin, Zhang, Ning, Guo, ChunCe, Xu, GuiXia, Kong, HongZhi, Shan, HongYan. Evolutionary divergence of the APETALA1 and CAULIFLOWER proteins. JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2012, 50(6): 502-511, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=4680876&detailType=1.
[48] 瞿礼嘉, 钱前, 袁明, 王小菁, 杨维才, 王台, 孔宏智, 蒋高明, 种康. 2011年中国植物科学若干领域重要研究进展. 植物学报[J]. 2012, 47(4): 309-356, http://lib.cqvip.com/Qikan/Article/Detail?id=42659121.
[49] Xu, Guixia, Guo, Chunce, Shan, Hongyan, Kong, Hongzhi. Divergence of duplicate genes in exon-intron structure. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2012, 109(4): 1187-1192, http://ir.ibcas.ac.cn/handle/2S10CLM1/15383.
[50] 孔宏智. 生物多样性是如何产生的?. 生物多样性[J]. 2012, 20(2): 117-118, http://lib.cqvip.com/Qikan/Article/Detail?id=41433527.
[51] 徐桂霞, 李安, 孔宏智. F-box基因拷贝数目变异的机制研究:以12种果蝇为例. 生物多样性[J]. 2011, 19(1): 3-16,124, http://lib.cqvip.com/Qikan/Article/Detail?id=36420654.
[52] Bharti Sharma, Chunce Guo, Hongzhi Kong, Elena M Kramer. Petal-specific subfunctionalization of an APETALA3 paralog in the Ranunculales and its implications for petal evolution. NEW PHYTOLOGIST[J]. 2011, 191(3): 870–883-, http://ir.ibcas.ac.cn/handle/2S10CLM1/14566.
[53] 孔宏智. Mechanisms underlying copy number variation in F-box genes: evidence from comparison of 12 Drosophila species. Biodiversity Science. 2011, [54] Sharma, Bharti, Guo, Chunce, Kong, Hongzhi, Kramer, Elena M. Petal-specific subfunctionalization of an APETALA3 paralog in the Ranunculales and its implications for petal evolution. NEW PHYTOLOGIST[J]. 2011, 191(3): 870-883, https://www.webofscience.com/wos/woscc/full-record/WOS:000292924600024.
[55] 袁明, 王小菁, 钱前, 杨维才, 瞿礼嘉, 王台, 孔宏智, 许亦农, 蒋高明, 种康. 2010年中国植物科学若干领域重要研究进展. 植物学报[J]. 2011, 46(3): 233-275, http://lib.cqvip.com/Qikan/Article/Detail?id=38250290.
[56] Zhang, Qiang, Antonelli, Alexandre, Feild, Taylor S, Kong, HongZhi. Revisiting taxonomy, morphological evolution, and fossil calibration strategies in Chloranthaceae. JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2011, 49(4): 315-329, http://lib.cqvip.com/Qikan/Article/Detail?id=38602763.
[57] Liu, Yang, Guo, ChunCe, Xu, GuiXia, Shan, HongYan, Kong, HongZhi. Evolutionary pattern of the regulatory network for flower development: Insights gained from a comparison of two Arabidopsis species. JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2011, 49(6): 528-538, http://ir.ibcas.ac.cn/handle/2S10CLM1/13176.
[58] Li, Haifeng, Liang, Wanqi, Jia, Ruidong, Yin, Changsong, Zong, Jie, Kong, Hongzhi, Zhang, Dabing. The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice. CELL RESEARCH[J]. 2010, 20(3): 299-313, http://lib.cqvip.com/Qikan/Article/Detail?id=33427141.
[59] 王台, 钱前, 袁明, 王小菁, 杨维才, 瞿礼嘉, 孔宏智, 许亦农, 蒋高明, 种康. 2009年中国植物科学若干领域重要研究进展. 植物学报[J]. 2010, 265-306, http://lib.cqvip.com/Qikan/Article/Detail?id=34284381.
[60] Liu, Cuijing, Zhang, Jian, Zhang, Ning, Shan, Hongyan, Su, Kunmei, Zhang, Jisi, Meng, Zheng, Kong, Hongzhi, Chen, Zhiduan. Interactions among Proteins of Floral MADS-Box Genes in Basal Eudicots: Implications for Evolution of the Regulatory Network for Flower Development. MOLECULAR BIOLOGY AND EVOLUTION[J]. 2010, 27(7): 1598-1611, http://dx.doi.org/10.1093/molbev/msq044.
[61] Gao, Xingchun, Liang, Wanqi, Yin, Changsong, Ji, Shenmin, Wang, Hongmei, Su, Xiao, Guo, Chunce, Kong, Hongzhi, Xue, Hongwei, Zhang, Dabing. The SEPALLATA-Like Gene OsMADS34 Is Required for Rice Inflorescence and Spikelet Development. PLANTPHYSIOLOGY[J]. 2010, 153(2): 728-740, http://ir.ibcas.ac.cn/handle/151111/7636.
[62] 山红艳, 薛皓月, 徐桂霞, 国春策, 孔宏智. 拟南芥和琴叶拟南芥中MADS-box基因的比较进化分析. 生物多样性[J]. 2010, 109-119, http://lib.cqvip.com/Qikan/Article/Detail?id=33446988.
[63] 袁明, 王小菁, 王台, 孔宏智, 许亦农, 蒋高明, 种康, 杨维才, 瞿礼嘉. 2008年中国植物科学若干领域重要研究进展. 植物学报[J]. 2009, 379-409, http://lib.cqvip.com/Qikan/Article/Detail?id=31229971.
[64] Xuelu Wang, Hongzhi Kong, Hong Ma. F-box proteins regulate ethylene signaling and more. GENES AND DEVELOPMENT[J]. 2009, 23(4): 391-396, http://ir.ibcas.ac.cn/handle/151111/4515.
[65] 瞿礼嘉, 王小菁, 王台, 杨维才, 许亦农, 袁明, 蒋高明, 孔宏智, 种康. 2007年中国植物科学若干领域重要研究进展. 植物学报[J]. 2009, 44(1): 2-26, http://lib.cqvip.com/Qikan/Article/Detail?id=29205076.
[66] Shan, Hongyan, Zahn, Laura, Guindon, Stephane, Wall, P Kerr, Kong, Hongzhi, Ma, Hong, dePamphilis, Claude W, LeebensMack, Jim. Evolution of Plant MADS Box Transcription Factors: Evidence for Shifts in Selection Associated with Early Angiosperm Diversification and Concerted Gene Duplications. MOLECULAR BIOLOGY AND EVOLUTION[J]. 2009, 26(10): 2229-2244, http://ir.ibcas.ac.cn/handle/151111/4517.
[67] Wang, Xuelu, Kong, Hongzhi, Ma, Hong. F-box proteins regulate ethylene signaling and more. GENES & DEVELOPMENT[J]. 2009, 23(4): 391-396, http://ir.ibcas.ac.cn/handle/151111/4515.
[68] Xu, Guixia, Ma, Hong, Nei, Masatoshi, Kong, Hongzhi. Evolution of F-box genes in plants: Different modes of sequence divergence and their relationships with functional diversification. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2009, 106(3): 835-840, http://ir.ibcas.ac.cn/handle/151111/4513.
[69] Xu, Guixia, Ma, Hong, Nei, Masatoshi, Kong, Hongzhi. Evolution of F-box genes in plants: Different modes of sequence divergence and their relationships with functional diversification. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2009, 106(3): 835-840, http://dx.doi.org/10.1073/pnas.0812043106.
[70] Quan, Li, Xiao, Rong, Li, Wuxing, Oh, SungAeong, Kong, Hongzhi, Ambrose, J Christian, Malcos, Jennelle L, Cyr, Richard, Twell, David, Ma, Hong. Functional divergence of the duplicated AtKIN14a and AtKIN14b genes: critical roles in Arabidopsis meiosis and gametophyte development. PLANT JOURNAL[J]. 2008, 53(6): 1013-1026, https://www.webofscience.com/wos/woscc/full-record/WOS:000253827600011.
[71] 种康, 瞿礼嘉, 袁明, 王小菁, 杨维才, 王台, 许亦农, 蒋高明, 孔宏智. 2006年中国植物科学若干领域重要研究进展. 植物学通报[J]. 2007, 24(3): 253-271, http://lib.cqvip.com/Qikan/Article/Detail?id=24563216.
[72] Hongzhi Kong, Lena L Landherr, Michael W Frohlich, Jim Leebensmack, Hong Ma, Claude W Depamphilis. Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth. THE PLANT JOURNAL[J]. 2007, 50(5): 873-885, http://ir.ibcas.ac.cn/handle/151111/4161.
[73] Xu, Guixia, Kong, Hongzhi. Duplication and divergence of floral MADS-box genes in grasses: Evidence for the generation and modification of novel regulators. JOURNAL OF INTEGRATIVE PLANT BIOLOGY[J]. 2007, 49(6): 927-939, http://lib.cqvip.com/Qikan/Article/Detail?id=24595395.
[74] Kong, Hongzhi, Landherr, Lena L, Frohlich, Michael W, LeebensMack, Jim, Ma, Hong, dePamphilis, Claude W. Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth. PLANT JOURNAL[J]. 2007, 50(5): 873-885, http://dx.doi.org/10.1111/j.1365-313X.2007.03097.x.
[75] Zhu, XinYu, Chase, Mark W, Qiu, YinLong, Kong, HongZhi, Dilcher, David L, Li, JianHua, Chen, ZhiDuan. Mitochondrial matR sequences help to resolve deep phylogenetic relationships in rosids. BMC EVOLUTIONARY BIOLOGY[J]. 2007, 7: http://ir.ibcas.ac.cn/handle/151111/4157.
[76] Shan, Hongyan, Zhan, Ning, Liu, Cuijing, Xu, Guixia, Zhang, Jian, Chen, Zhiduan, Kong, Hongzhi. Patterns of gene duplication and functional diversification during the evolution of the AP1/SQUA subfamily of plant MADS-box genes. MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2007, 44(1): 26-41, http://dx.doi.org/10.1016/j.ympev.2007.02.016.
[77] Guixia Xu, Hongzhi Kong. Duplication and Divergence of Floral MADS-Box Genes in Grasses: Evidence for the Generation and Modification of Novel Regulators. 植物学报:英文版[J]. 2007, 49(6): 927-939, http://lib.cqvip.com/Qikan/Article/Detail?id=24595395.
[78] 孔宏智. Origins and evolution of the recA/RAD51 gene family: Evidence for ancient gene duplication and symbiotic gene transfer. Proceedings of the National Academy of Sciences USA. 2006, [79] Zahn, LM, King, HZ, LeebensMack, JH, Kim, S, Soltis, PS, Landherr, LL, Soltis, DE, dePamphilis, CW, Ma, H. The evolution of the SEPALLATA subfamily of MADS-Box genes: A preangiosperm origin with multiple duplications throughout angiosperm history. GENETICS[J]. 2005, 169(4): 2209-2223, http://dx.doi.org/10.1534/genetics.104.037770.
[80] Kim S, Koh J, Yoo M J, Kong Hongzhi, Hu Yi, Ma Hong, Soltis P S, Soltis D E. Expression of floral MADS-box genes in basal angiosperms: Implication for the evolution of floral regulators. THE PLANT JOURNAL[J]. 2005, 43(5): 724-744, http://ir.ibcas.ac.cn/handle/151111/5801.
[81] Kim S, Koh J, Yoo MJ, Kong HongZhi, Hu Yi, Ma Hong, Soltis PS, Soltis DE. Expression of floral MADS-box genes in basal angiosperms: Implication for the evolution of floral regulators. PLANT JOURNAL[J]. 2005, 43(5): 724-744, http://ir.ibcas.ac.cn/handle/151111/5801.
[82] Wang, GF, Kong, HZ, Sun, YJ, Zhang, XH, Zhang, W, Altman, N, dePamphilis, CW, Ma, H. Genome-wide analysis of the cyclin family in Arabidopsis and comparative phylogenetic analysis of plant cyclin-like proteins. PLANT PHYSIOLOGY[J]. 2004, 135(2): 1084-1099, https://www.webofscience.com/wos/woscc/full-record/WOS:000222165300050.
[83] Kong, HZ, LeebensMack, J, Ni, WM, dePamphilis, CW, Ma, H. Highly heterogeneous rates of evolution in the SKP1 gene family in plants and animals: Functional and evolutionary implications. MOLECULAR BIOLOGY AND EVOLUTION[J]. 2004, 21(1): 117-128, http://dx.doi.org/10.1093/molbev/msh001.
[84] 李贵生, 孟征, 孔宏智, 陈之端, 路安民. ABC模型与花进化研究. 科学通报[J]. 2003, 48(23): 2415-2421, http://lib.cqvip.com/Qikan/Article/Detail?id=8822512.
[85] 孔宏智. Phylogenetic relationships within Chloranthus Sw. (Chloranthaceae) based on nuclear ITS and plastid trnL-F sequence data. American Journal of Botany. 2002, [86] 孔宏智. Floral organogenesis of Chloranthus sessilifolius K. F. Wu (Chloranthaceae) with special emphasis on the morphological nature of the androecium of Chloranthus Sw.. Plant Systematics and Evolution. 2002, [87] Kong, HZ. Comparative morphology of leaf epidermis in the Chloranthaceae. BOTANICAL JOURNAL OF THE LINNEAN SOCIETY[J]. 2001, 136(3): 279-294, http://dx.doi.org/10.1006/bojl.2001.0442.
[88] 孔宏智, 陈之端. 金粟兰属的系统发育:核糖体DNAITS区序列的证据(英文). 植物学报[J]. 2000, 42(7): 762-, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=920999&detailType=1.
[89] 孔宏智, 陈之端. 金粟兰属的系统发育:核糖体DNA ITS区序列的证据. 植物学报:英文版[J]. 2000, 42(7): 762-764, http://lib.cqvip.com/Qikan/Article/Detail?id=4312192.
[90] 孔宏智. 金粟兰属的系统学研究. 2000, 116-, http://ir.ibcas.ac.cn/handle/2S10CLM1/13986.
[91] 孔宏智. 宽叶金粟兰及其近缘类群的修订. 植物分类学报[J]. 2000, 38(4): 355-, http://lib.cqvip.com/Qikan/Article/Detail?id=4449785.
[92] 孔宏智. Taxonomic notes on Chloranthus henryi Hemsl. and its allies. Acta Phytotaxonomica Sinica. 2000, [93] 孔宏智. Karyotypes of Sarcandra Gardn. and Chloranthus Sw. (Chloranthaceae) from China. Botanical Journal of the Linnean Society. 2000, [94] 杨冬之, 钱韦, 刘忠, 孔宏智. 评统一进化理论:与陈继明先生商榷. 科学通报[J]. 2000, 45(8): 885-, http://lib.cqvip.com/Qikan/Article/Detail?id=4395167.
[95] Kong, HZ, Chen, ZD. Phylogeny in Chloranthus Swartz (Chloranthaceae) inferred from sequence analysis of nrDNA ITS region. ACTA BOTANICA SINICA[J]. 2000, 42(7): 762-764, https://www.webofscience.com/wos/woscc/full-record/WOS:000088663700020.
[96] 孔宏智. Karyomorphology of the genus Pomatosace Maxim. (Primulaceae).. Acta Phytotaxonomica Sinica. 1999, [97] 杨亲二, 孔宏智. 星叶草属的核形态及其系统位置. 植物分类学报[J]. 1997, 35(6): 494-, http://lib.cqvip.com/Qikan/Article/Detail?id=2763035.
[98] 孔宏智. Karyomorphology and relationships of the genus Circaeaster Maxim.. Acta Phytotaxonomica Sinica. 1997, 

科研活动

   
科研项目
( 1 ) 减数分裂共性和特性的分子基础, 主持, 国家级, 2011-01--2015-08
( 2 ) 重复基因在编码区分化的机制及其进化意义的研究, 主持, 国家级, 2010-01--2012-12
( 3 ) 毛茛科植物花瓣形态和结构的适应性进化及其分子机制研究, 主持, 国家级, 2014-01--2018-12
( 4 ) Eco-Evo-Devo与Genomics创新团队, 主持, 部委级, 2014-01--2016-12
( 5 ) 植物进化与发育, 主持, 国家级, 2012-01--2015-12
( 6 ) 花部性状发育和演化的遗传调控及其分子机制, 主持, 部委级, 2007-01--2010-12
( 7 ) 基部真双子叶植物中A、B、C和E类MADS-box基因的进化, 主持, 国家级, 2006-01--2009-12
( 8 ) 金粟兰中5个MADS-box基因的功能与进化研究, 主持, 国家级, 2005-01--2007-12
( 9 ) 被子植物中最简单的花的发育与进化, 主持, 国家级, 2002-05--2006-04
( 10 ) 金粟兰科的系统发育和分子生物地理学研究, 主持, 国家级, 2002-01--2004-12
( 11 ) 新性状起源的分子机制和叠加效应研究——以黑种草属植物花瓣的表型复杂化为例, 主持, 国家级, 2017-01--2019-12
参与会议
(1)Ranunculaceae and the evo-devo of the flower   2016全国植物生物学大会   2016-10-09
(2)Ranunculaceae and the evo-devo of the flower   2016全国系统与进化植物学研讨会暨第十二届青年学术研讨会   2016-09-09
(3)Nigella as a new model system for the study of plant development evolution   基因组-表型组架桥分析全国研讨会   2016-08-21
(4)Nigella as a new model for the study of plant developmental evolution   第十二届全国植物结构与生殖生物学学术研讨会   2016-08-01
(5)花起源和多样化的分子机制研究   第一届进化遗传青年科学家论坛   2016-07-15
(6)Nigella as a new model system for the study of plant developmental evolution   37th New Phytologist Symposium: Plant Developmental Evolution   2016-05-15
(7)Floral organ identity determination in Nigella damascena (Ranunculaceae), a species with spiral flowers   The 4th International Symposium on Plant Reproductive Development   2015-08-03
(8)花器官身份决定:机制与进化   2014全国系统与进化植物学研讨会暨第十一届青年学术研讨会   2014-11-07
(9)Floral Organ Identity Determination: Mechanism and Evolution   The Symposium of Genomics and Plant Evolution   2014-10-13
(10)Divergence of Duplicate Genes in Exon-intron Structure   18th Evolutionary Biology Meeting   2014-09-15
(11)毛茛科中花瓣缺失的分子机制研究   第十一届全国植物结构与生殖生物学学术研讨会   2014-07-21
(12)Parallel petal losses within the buttercup family (Ranunculaceae) and their underlying mechanisms   XIV Congress of the European Society for Evolutionary Biology (ESEB 2013)   2013-08-19
(13)Buttercups and the Evo-Devo of Flowers   The 3rd International Symposium on Plant Reproductive Development   2013-07-16
(14)花瓣的缺失及其分子机理   2012年全国植物生物学大会   2012-10-10
(15)毛茛科植物花瓣缺失的分子机理   中国植物学会植物细胞生物学2012学术年会   2012-08-26
(16)Evolution of the regulatory network for floral development   The Ninth International Conference on Plant Biology Frontiers: Reproductive Biology   2011-10-30
(17)毛茛科花瓣的发育和进化研究   2011年全国系统与进化植物学暨第十届青年学术研讨会   2011-10-25
(18)Evolution of the regulatory network for floral development   The 18th Penn State Plant Biology Symposium   2011-05-18
(19)Evolution of the regulatory network for floral development   Sino-German Symposium on Applied Plant Cell Biology   2011-03-06
(20)Evolution of the regulatory network for floral development   New Frontiers in Plant Systematics and Evolution   2010-07-07
(21)Evolution of the regulatory network for floral development   Plant and Animal Genome XVIII conference   2010-01-09
(22)Evolution of the regulatory network for flower development   Darwin-China 200 Conference Celebrating 150th Anniversary of On the Origin of Species   2009-10-24
(23)Toward understanding the evolution of the regulatory network for flower development   BBSRC UK-China CP Meeting (Plant Reproductive Development)   2009-07-30
(24)Genome-wide analysis of duplicated MADS-box and F-box genes: evidence for multiple mechanisms of duplication and diversification   25th Symposium in Plant Biology - The Evolution of Plant Development   2009-01-29
(25)Genome-wide analysis of duplicated MADS-box genes: evidence for multiple mechanisms of duplication and diversification   第九届全国植物基因组学大会   2008-07-18
(26)Duplication and diversification of floral MADS-box genes   Pre-Symposium of East Asian Society of Plant Taxonomists - Evo-Devo & Phylogenetics, Regional Floristic Studies   2007-10-05
(27)Tracing the evolutionary histories of SKP1-like gene   Evolutionary Biology in the 21st Century - Tracing Patterns of Evolution through the Tree of Life   2007-06-03
(28)Evolution of the AP1/SQUA Subfamily of Plant MADS-Box Genes   第一届全国植物进化发育生物学研讨会   2005-08-23

指导学生

已指导学生

张宁  博士研究生  071001-植物学  

贾瑞冬  博士研究生  071001-植物学  

刘杨  博士研究生  071001-植物学  

李安  硕士研究生  071001-植物学  

王斌  博士研究生  071001-植物学  

张强  博士研究生  071001-植物学  

徐桂霞  博士研究生  071001-植物学  

张睿  博士研究生  071001-植物学  

国春策  博士研究生  071001-植物学  

张文根  博士研究生  071001-植物学  

王培培  博士研究生  071001-植物学  

李琳  博士研究生  071001-植物学  

孟凡锐  硕士研究生  071001-植物学  

戴军  硕士研究生  071001-植物学  

李浩  博士研究生  071001-植物学  

余显显  博士研究生  071001-植物学  

现指导学生

段晓姗  博士研究生  071001-植物学  

廖虹  博士研究生  071001-植物学  

蒋永超  博士研究生  071001-植物学  

叶玲玲  博士研究生  071001-植物学  

傅学浩  硕士研究生  071001-植物学  

姚序  博士研究生  071001-植物学  

袁毅  硕士研究生  071001-植物学  

程劼  博士研究生  071001-植物学  

谢京合  博士研究生  071001-植物学  

赵彩耀  博士研究生  071001-植物学  

徐永欣  硕士研究生  071001-植物学  

孙雨哲   博士研究生  071001-植物学  

武生聃  博士研究生  071001-植物学