发表论文
[1] Yuan, Yi, Li, Xuan, Yao, Xu, Fu, Xuehao, Cheng, Jie, Shan, Hongyan, Yin, Xiaofeng, Kong, Hongzhi. Mechanisms underlying the formation of complex color patterns on Nigella orientalis (Ranunculaceae) petals. NEW PHYTOLOGIST[J]. 2023, 237(6): 2450-2466, http://dx.doi.org/10.1111/nph.18681.[2] Cheng, Jie, Yao, Xu, Li, Xukun, Yue, Liang, Duan, Xiaoshan, Li, Boka, Fu, Xuehao, Li, Shuixian, Shan, Hongyan, Yin, Xiaofeng, Whitewoods, Christopher, Coen, Enrico, Kong, Hongzhi. Diversification of ranunculaceous petals in shape supports a generalized model for plant lateral organ morphogenesis and evolution. SCIENCE ADVANCES[J]. 2023, 9(16): eadf8049-, https://www.science.org/doi/10.1126/sciadv.adf8049.[3] Zhao, Huiqi, Liao, Hong, Li, Shuixian, Zhang, Rui, Dai, Jing, Ma, Pengrui, Wang, Tianpeng, Wang, Meimei, Yuan, Yi, Fu, Xuehao, Cheng, Jie, Duan, Xiaoshan, Xie, Yanru, Zhang, Peng, Kong, Hongzhi, Shan, Hongyan. Delphinieae flowers originated from the rewiring of interactions between duplicated and diversified floral organ identity and symmetry genes. PLANT CELL[J]. 2023, [4] Fu, Xuehao, Shan, Hongyan, Yao, Xu, Cheng, Jie, Jiang, Yongchao, Yin, Xiaofeng, Kong, Hongzhi. Petal development and elaboration. JOURNAL OF EXPERIMENTAL BOTANY[J]. 2022, 73(11): 3308-3318, https://academic.oup.com/jxb/article/73/11/3308/6547097.[5] 薛成, 李波卡, 雷天宇, 山红艳, 孔宏智. 生物多样性起源与进化研究进展. 生物多样性[J]. 2022, 30(10): 34-47, http://lib.cqvip.com/Qikan/Article/Detail?id=7108625089.[6] Shan, Hongyan, Kong, Hongzhi. The genome of Ginkgo biloba refined. NATURE PLANTS[J]. 2021, 7(6): 714-715, [7] Liuyu Qin, Yiheng Hu, Jinpeng Wang, Xiaoliang Wang, Ran Zhao, Hongyan Shan, Kunpeng Li, Peng Xu, Hanying Wu, Xueqing Yan, Lumei Liu, Xin Yi, Stefan Wanke, John E Bowers, James H LeebensMack, Claude W dePamphilis, Pamela S Soltis, Douglas E Soltis, Hongzhi Kong, Yuannian Jiao. Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome. NATURE PLANTS[J]. 2021, 7(9): 1239-1253, [8] Liao, Hong, Fu, Xuehao, Zhao, Huiqi, Cheng, Jie, Zhang, Rui, Yao, Xu, Duan, Xiaoshan, Shan, Hongyan, Kong, Hongzhi. The morphology, molecular development and ecological function of pseudonectaries on Nigella damascena (Ranunculaceae) petals. NATURE COMMUNICATIONS[J]. 2020, 11(1): [9] Jinghe Xie, Haifeng Zhao, Kunpeng Li, Rui Zhang, Yongchao Jiang, Meimei Wang, Xuelian Guo, Ben Yu, Hongzhi Kong, Yuannian Jiao, Guixia Xu. A chromosome-scale reference genome of Aquilegia oxysepala var. kansuensis. HORTICULTURE RESEARCH[J]. 2020, 7(1): 1413-1425, http://dx.doi.org/10.1038/s41438-020-0328-y.[10] Zhang, Liangsheng, Chen, Fei, Zhang, Xingtan, Li, Zhen, Zhao, Yiyong, Lohaus, Rolf, Chang, Xiaojun, Dong, Wei, Ho, Simon Y W, Liu, Xing, Song, Aixia, Chen, Junhao, Guo, Wenlei, Wang, Zhengjia, Zhuang, Yingyu, Wang, Haifeng, Chen, Xuequn, Hu, Juan, Liu, Yanhui, Qin, Yuan, Wang, Kai, Dong, Shanshan, Liu, Yang, Zhang, Shouzhou, Yu, Xianxian, Wu, Qian, Wang, Liangsheng, Yan, Xueqing, Jiao, Yuannian, Kong, Hongzhi, Zhou, Xiaofan, Yu, Cuiwei, Chen, Yuchu, Li, Fan, Wang, Jihua, Chen, Wei, Chen, Xinlu, Jia, Qidong, Zhang, Chi, Jiang, Yifan, Zhang, Wanbo, Liu, Guanhua, Fu, Jianyu, Chen, Feng, Ma, Hong, Van de Peer, Yves, Tang, Haibao. The water lily genome and the early evolution of flowering plants. NATURE[J]. 2020, 577(7788): 79-+, http://dx.doi.org/10.1038/s41586-019-1852-5.[11] Zhang, Jian, Fu, XinXing, Li, RuiQi, Zhao, Xiang, Liu, Yang, Li, MingHe, Zwaenepoel, Arthur, Ma, Hong, Goffinet, Bernard, Guan, YanLong, Xue, JiaYu, Liao, YiYing, Wang, QingFeng, Wang, QingHua, Wang, JieYu, Zhang, Guo Qiang, Wang, ZhiWen, Jia, Yu, Wang, MeiZhi, Dong, ShanShan, Yang, JianFen, Jiao, YuanNian, Guo, YaLong, Kong, HongZhi, Lu, AnMing, Yang, HuanMing, Zhang, ShouZhou, Van de Peer, Yves, Liu, ZhongJian, Chen, ZhiDuan. The hornwort genome and early land plant evolution. NATURE PLANTS[J]. 2020, 6(2): 107-118, https://www.webofscience.com/wos/woscc/full-record/WOS:000512529000001.[12] Zhang, Rui, Fu, Xuehao, Zhao, Caiyao, Cheng, Jie, Liao, Hong, Wang, Peipei, Yao, Xu, Duan, Xiaoshan, Yuan, Yi, Xu, Guixia, Kramer, Elena M, Shan, Hongyan, Kong, Hongzhi. Identification of the Key Regulatory Genes Involved in Elaborate Petal Development and Specialized Character Formation in Nigella damascena (Ranunculaceae)(OPEN). PLANT CELL[J]. 2020, 32(10): 3095-3112, http://dx.doi.org/10.1105/tpc.20.00330.[13] Duan, Xiaoshan, Zhao, Caiyao, Jiang, Yongchao, Zhang, Rui, Shan, Hongyan, Kong, Hongzhi. Parallel evolution of apetalous lineages within the buttercup family (Ranunculaceae): outward expansion ofAGAMOUS1, rather than disruption ofAPETALA3-3. PLANT JOURNAL[J]. 2020, 104(5): 1169-1181, http://dx.doi.org/10.1111/tpj.14985.[14] 孔宏智. Identification of the target genes of AqAPETALA3-3 (AqAP3-3) in Aquilegia coerulea (Ranunculaceae) helps understand the molecular bases of the conserved and nonconserved features of petals. New Phytologist. 2020, [15] Zhang, Rui, Min, Ya, Holappa, Lynn D, WalcherChevillet, Cristina L, Duan, Xiaoshan, Donaldson, Emily, Kong, Hongzhi, Kramer, Elena M. A role for the Auxin Response Factors ARF6 and ARF8 homologs in petal spur elongation and nectary maturation in Aquilegia. NEW PHYTOLOGIST[J]. 2020, 227(5): 1392-1405, http://dx.doi.org/10.1111/nph.16633.[16] Liao, Hong, Fu, Xuehao, Zhao, Huiqi, Cheng, Jie, Zhang, Rui, Yao, Xu, Duan, Xiaoshan, Shan, Hongyan, Kong, Hongzhi. The morphology, molecular development and ecological function of pseudonectaries on Nigella damascena (Ranunculaceae) petals (vol 11, 1777, 2020). NATURE COMMUNICATIONSnull. 2020, 11(1): https://www.webofscience.com/wos/woscc/full-record/WOS:000558813200002.[17] Jiang, Yongchao, Wang, Meimei, Zhang, Rui, Xie, Jinghe, Duan, Xiaoshan, Shan, Hongyan, Xu, Guixia, Kong, Hongzhi. Identification of the target genes of AqAPETALA3-3 (AqAP3-3) in Aquilegia coerulea (Ranunculaceae) helps understand the molecular bases of the conserved and nonconserved features of petals. NEW PHYTOLOGIST[J]. 2020, 227(4): 1235-1248, http://dx.doi.org/10.1111/nph.16601.[18] Liu, PingLi, Zhang, Xi, Mao, JianFeng, Hong, YanMing, Zhang, RenGang, Yilan, E, Nie, Shuai, Jia, Kaihua, Jiang, ChenKun, He, Jian, Shen, Weiwei, He, Qizouhong, Zheng, Wenqing, Abbas, Samar, Jewaria, Pawan Kumar, Tian, Xuechan, Liu, Changjun, Jiang, Xiaomei, Yin, Yafang, Liu, Bo, Wang, Li, Jin, Biao, Ma, Yongpeng, Qiu, Zongbo, Baluska, Frantisek, Samaj, Jozef, He, Xinqiang, Niu, Shihui, Xie, Jianbo, Xie, Lei, Xu, Huimin, Kong, Hongzhi, Ge, Song, Dixon, Richard A, Jiao, Yuannian, Lin, Jinxing. The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements. GENOME BIOLOGY[J]. 2020, 21(1): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7709256/.[19] Zhai, Wei, Duan, Xiaoshan, Zhang, Rui, Guo, Chunce, Li, Lin, Xu, Guixia, Shan, Hongyan, Kong, Hongzhi, Ren, Yi. Chloroplast genomic data provide new and robust insights into the phylogeny and evolution of the Ranunculaceae. MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2019, 135: 12-21, http://dx.doi.org/10.1016/j.ympev.2019.02.024.[20] Shan, Hongyan, Cheng, Jie, Zhang, Rui, Yao, Xu, Kong, Hongzhi. Developmental mechanisms involved in the diversification of flowers. NATURE PLANTS[J]. 2019, 5(9): 917-923, http://dx.doi.org/10.1038/s41477-019-0498-5.[21] Yao, Xu, Zhang, Wengen, Duan, Xiaoshan, Yuan, Yi, Zhang, Rui, Shan, Hongyan, Kong, Hongzhi. The making of elaborate petals in Nigella through developmental repatterning. NEW PHYTOLOGIST[J]. 2019, 223(1): 385-396, [22] 王宏哲, 张睿, 程劼, 段晓姗, 赵慧琪, 山红艳, 孔宏智. 花基本结构的多样性及其分子机制. 中国科学:生命科学[J]. 2019, 292-300, https://www.sciengine.com/doi/10.1360/N052018-00219.[23] Zhang, Luoyan, Kong, Hongzhi, Ma, Hong, Yang, Ji. Phylogenomic detection and functional prediction of genes potentially important for plant meiosis. GENE[J]. 2018, 643: 83-97, http://dx.doi.org/10.1016/j.gene.2017.12.005.[24] 陈凡, 钱前, 王台, 董爱武, 漆小泉, 左建儒, 杨淑华, 林荣呈, 萧浪涛, 顾红雅, 陈之端, 姜里文, 白永飞, 孔宏智, 种康. 2017年中国植物科学若干领域重要研究进展. 植物学报[J]. 2018, 53(4): 391-440, https://nxgp.cnki.net/kcms/detail?dbcode=CJFQ&dbname=CJFDLAST2018&filename=ZWXT201804001&v=MjkxMDNUZXJHNEg5bk1xNDlGWllSOGVYMUx1eFlTN0RoMVQzcVRyV00xRnJDVVI3cWVaZVJuRkN2bFVyL0xQenI=.[25] Alex Harkess, Jinsong Zhou, Chunyan Xu, John E Bowers, Ron Van der Hulst, Saravanaraj Ayyampalayam, Francesco Mercati, Paolo Riccardi, Michael R McKain, Atul Kakrana, Haibao Tang, Jeremy Ray, John Groenendijk, Siwaret Arikit, Sandra M Mathioni, Mayumi Nakano, Hongyan Shan, Alexa TelgmannRauber, Akira Kanno, Zhen Yue, Haixin Chen, Wenqi Li, Yanling Chen, Xiangyang Xu, Yueping Zhang, Shaochun Luo, Helong Chen, Jianming Gao, Zichao Mao, J Chris Pires, Meizhong Luo, Dave Kudrna, Rod A Wing, Blake C Meyers, Kexian Yi, Hongzhi Kong, Pierre Lavrijsen, Francesco Sunseri, Agostino Falavigna, Yin Ye, James H LeebensMack, Guangyu Chen. The asparagus genome sheds light on the origin and evolution of a young Y chromosome. NATURE COMMUNICATIONS[J]. 2017, 8(1): http://ir.ibcas.ac.cn/handle/2S10CLM1/15450.[26] 山红艳, 孔宏智. 花是如何起源的?. 科学通报[J]. 2017, 62(21): 2323-2334, [27] Huang, Jian, Li, Zhiyong, Biener, Gabriel, Xiong, Erhui, Malik, Shikha, Eaton, Nathan, Zhao, Catherine Z, Raicu, Valerica, Kong, Hongzhi, Zhao, Dazhong. Carbonic Anhydrases Function in Anther Cell Differentiation Downstream of the Receptor-Like Kinase EMS1. PLANT CELL[J]. 2017, 29(6): 1335-1356, http://ir.ibcas.ac.cn/handle/2S10CLM1/15466.[28] Kramer, Elena M, Kong, Hongzhi, Rausher, Mark D. Plant evolutionary developmental biology. Introduction to a special issue. NEW PHYTOLOGIST. 2017, 216(2): 335-336, https://www.webofscience.com/wos/woscc/full-record/WOS:000427294000001.[29] 王小菁, 萧浪涛, 董爱武, 王台, 钱前, 漆小泉, 陈凡, 左建儒, 杨淑华, 顾红雅, 陈之端, 姜里文, 白永飞, 孔宏智, 种康. 2016年中国植物科学若干领域重要研究进展. 植物学报[J]. 2017, 52(4): 394-452, https://nxgp.cnki.net/kcms/detail?v=3uoqIhG8C44YLTlOAiTRKibYlV5Vjs7iAEhECQAQ9aTiC5BjCgn0RvHvmHSIwyanIMNe3ShUg3vFPWgu8uJpZbL79tBo7mME&uniplatform=NZKPT.[30] Wang, Peipei, Liao, Hong, Zhang, Wengen, Yu, Xianxian, Zhang, Rui, Shan, Hongyan, Duan, Xiaoshan, Yao, Xu, Kong, Hongzhi. Flexibility in the structure of spiral flowers and its underlying mechanisms. NATURE PLANTS[J]. 2016, 2(1): http://ir.ibcas.ac.cn/handle/2S10CLM1/12228.[31] 杨淑华, 王台, 钱前, 王小菁, 左建儒, 顾红雅, 姜里文, 陈之端, 白永飞, 孔宏智, 陈凡, 萧浪涛, 董爱武, 种康. 2015年中国植物科学若干领域重要研究进展. 植物学报[J]. 2016, 51(4): 416-472, https://kns.cnki.net/KCMS/detail/detail.aspx?dbcode=CJFQ&dbname=CJFDLAST2016&filename=ZWXT201604002&v=MDMzNzJxNDlGWm9SOGVYMUx1eFlTN0RoMVQzcVRyV00xRnJDVVI3cWVaZVZ1Rnlqa1dyekFQenJUZXJHNEg5Zk0=.[32] Yu, Xianxian, Duan, Xiaoshan, Zhang, Rui, Fu, Xuehao, Ye, Lingling, Kong, Hongzhi, Xu, Guixia, Shan, Hongyan. Prevalent Exon-Intron Structural Changes in the APETALA1/FRUITFULL, SEPALLATA, AGAMOUS-LIKE6, and FLOWERING LOCUS C MADS-Box Gene Subfamilies Provide New Insights into Their Evolution. FRONTIERS IN PLANT SCIENCE[J]. 2016, 7(-): http://ir.ibcas.ac.cn/handle/2S10CLM1/12373.[33] Lingling Ye, Bin Wang, Wengen Zhang, Hongyan Shan, Hongzhi Kong. Gains and Losses of Cis-regulatory Elements Led to Divergence of the Arabidopsis APETALA1 and CAULIFLOWER Duplicate Genes in the Time, Space, and Level of Expression and Regulation of One Paralog by the Other 1 OPEN. PLANT PHYSIOLOGY. 2016, 171(2): 1055-1069, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4902614/.[34] 孔宏智. 生物多样性事业呼唤对物种概念和物种划分标准的深度讨论. 生物多样性[J]. 2016, 24(9): 977-978, http://lib.cqvip.com/Qikan/Article/Detail?id=670306371.[35] 种康, 王台, 钱前, 王小菁, 左建儒, 顾红雅, 姜里文, 陈之端, 白永飞, 杨淑华, 孔宏智, 陈凡, 萧浪涛. 2014年中国植物科学若干领域重要研究进展. 植物学报[J]. 2015, 50(4): 412-459, [36] Li, Lin, Yu, XianXian, Guo, ChunCe, Duan, XiaoShan, Shan, HongYan, Zhang, Rui, Xu, GuiXia, Kong, HongZhi. Interactions among proteins of floral MADS-box genes in Nuphar pumila (Nymphaeaceae) and the most recent common ancestor of extant angiosperms help understand the underlying mechanisms of the origin of the flower. JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2015, 53(4): 285-296, http://dx.doi.org/10.1111/jse.12148.[37] Zeng, Liping, Zhang, Qiang, Sun, Renran, Kong, Hongzhi, Zhang, Ning, Ma, Hong. Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times. NATURE COMMUNICATIONS[J]. 2014, 5(-): http://ir.ibcas.ac.cn/handle/2S10CLM1/12167.[38] Li, Hao, Meng, Fanrui, Guo, Chunce, Wang, Yingxiang, Xie, Xiaojing, Zhu, Tiansheng, Zhou, Shuigeng, Ma, Hong, Shan, Hongyan, Kong, Hongzhi. MeioBase: acomprehensive database for meiosis. FRONTIERS IN PLANT SCIENCE[J]. 2014, 5(728): https://doaj.org/article/80a9e9b6d5f74faa9fdf6ba61b439141.[39] 袁明, 瞿礼嘉, 王小菁, 钱前, 杨维才, 王台, 孔宏智, 蒋高明, 种康. 2013年中国植物科学若干领域重要研究进展. 植物学报[J]. 2014, 49(4): 347-406, https://d.wanfangdata.com.cn/periodical/zwxtb201404001.[40] 孔宏智. 从基因组到多样性. 生物多样性[J]. 2014, 22(1): 1-3, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=5051161&detailType=1.[41] Jia, RuiDong, Guo, ChunCe, Xu, GuiXia, Shan, HongYan, Kong, HongZhi. Evolution of the cyclin gene family in plants. JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2014, 52(5): 651-659, http://ir.ibcas.ac.cn/handle/2S10CLM1/12232.[42] 张睿, 国春策, 山红艳, 孔宏智. 发育重塑与生物多样性. 生物多样性[J]. 2014, 22(1): 66-71, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=5051166&detailType=1.[43] 国春策, 张睿, 山红艳, 孔宏智. 调控进化与形态多样性. 生物多样性[J]. 2014, 22(1): 72-79, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=5051167&detailType=1.[44] 钱前, 瞿礼嘉, 袁明, 王小菁, 杨维才, 王台, 孔宏智, 蒋高明, 种康. 2012年中国植物科学若干领域重要研究进展. 植物学报[J]. 2013, 48(3): 231-287, http://lib.cqvip.com/Qikan/Article/Detail?id=46287133.[45] Zhang, Rui, Guo, Chunce, Zhang, Wengen, Wang, Peipei, Li, Lin, Duan, Xiaoshan, Du, Qinggao, Zhao, Liang, Shan, Hongyan, Hodges, Scott A, Kramer, Elena M, Ren, Yi, Kong, Hongzhi. Disruption of the petal identity gene APETALA3-3 is highly correlated with loss of petals within the buttercup family (Ranunculaceae). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2013, 110(13): 5074-5079, http://ir.ibcas.ac.cn/handle/2S10CLM1/16987.[46] Kahloul, Senda, El Beji, Imen HajSalah, Boulaflous, Aurelia, Ferchichi, Ali, Kong, Hongzhi, Mouzeyar, Said, Bouzidi, Mohamed Fouad. Structural, Expression and Interaction Analysis of Rice SKP1-Like Genes. DNA RESEARCH[J]. 2013, 20(1): 67-78, http://dx.doi.org/10.1093/dnares/dss034.[47] Wang, Bin, Zhang, Ning, Guo, ChunCe, Xu, GuiXia, Kong, HongZhi, Shan, HongYan. Evolutionary divergence of the APETALA1 and CAULIFLOWER proteins. JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2012, 50(6): 502-511, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=4680876&detailType=1.[48] 瞿礼嘉, 钱前, 袁明, 王小菁, 杨维才, 王台, 孔宏智, 蒋高明, 种康. 2011年中国植物科学若干领域重要研究进展. 植物学报[J]. 2012, 47(4): 309-356, http://lib.cqvip.com/Qikan/Article/Detail?id=42659121.[49] Xu, Guixia, Guo, Chunce, Shan, Hongyan, Kong, Hongzhi. Divergence of duplicate genes in exon-intron structure. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2012, 109(4): 1187-1192, http://ir.ibcas.ac.cn/handle/2S10CLM1/15383.[50] 孔宏智. 生物多样性是如何产生的?. 生物多样性[J]. 2012, 20(2): 117-118, http://lib.cqvip.com/Qikan/Article/Detail?id=41433527.[51] 徐桂霞, 李安, 孔宏智. F-box基因拷贝数目变异的机制研究:以12种果蝇为例. 生物多样性[J]. 2011, 19(1): 3-16,124, http://lib.cqvip.com/Qikan/Article/Detail?id=36420654.[52] Bharti Sharma, Chunce Guo, Hongzhi Kong, Elena M Kramer. Petal-specific subfunctionalization of an APETALA3 paralog in the Ranunculales and its implications for petal evolution. NEW PHYTOLOGIST[J]. 2011, 191(3): 870–883-, http://ir.ibcas.ac.cn/handle/2S10CLM1/14566.[53] 孔宏智. Mechanisms underlying copy number variation in F-box genes: evidence from comparison of 12 Drosophila species. Biodiversity Science. 2011, [54] Sharma, Bharti, Guo, Chunce, Kong, Hongzhi, Kramer, Elena M. Petal-specific subfunctionalization of an APETALA3 paralog in the Ranunculales and its implications for petal evolution. NEW PHYTOLOGIST[J]. 2011, 191(3): 870-883, https://www.webofscience.com/wos/woscc/full-record/WOS:000292924600024.[55] 袁明, 王小菁, 钱前, 杨维才, 瞿礼嘉, 王台, 孔宏智, 许亦农, 蒋高明, 种康. 2010年中国植物科学若干领域重要研究进展. 植物学报[J]. 2011, 46(3): 233-275, http://lib.cqvip.com/Qikan/Article/Detail?id=38250290.[56] Zhang, Qiang, Antonelli, Alexandre, Feild, Taylor S, Kong, HongZhi. Revisiting taxonomy, morphological evolution, and fossil calibration strategies in Chloranthaceae. JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2011, 49(4): 315-329, http://lib.cqvip.com/Qikan/Article/Detail?id=38602763.[57] Liu, Yang, Guo, ChunCe, Xu, GuiXia, Shan, HongYan, Kong, HongZhi. Evolutionary pattern of the regulatory network for flower development: Insights gained from a comparison of two Arabidopsis species. JOURNAL OF SYSTEMATICS AND EVOLUTION[J]. 2011, 49(6): 528-538, http://ir.ibcas.ac.cn/handle/2S10CLM1/13176.[58] Li, Haifeng, Liang, Wanqi, Jia, Ruidong, Yin, Changsong, Zong, Jie, Kong, Hongzhi, Zhang, Dabing. The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice. CELL RESEARCH[J]. 2010, 20(3): 299-313, http://lib.cqvip.com/Qikan/Article/Detail?id=33427141.[59] 王台, 钱前, 袁明, 王小菁, 杨维才, 瞿礼嘉, 孔宏智, 许亦农, 蒋高明, 种康. 2009年中国植物科学若干领域重要研究进展. 植物学报[J]. 2010, 265-306, http://lib.cqvip.com/Qikan/Article/Detail?id=34284381.[60] Liu, Cuijing, Zhang, Jian, Zhang, Ning, Shan, Hongyan, Su, Kunmei, Zhang, Jisi, Meng, Zheng, Kong, Hongzhi, Chen, Zhiduan. Interactions among Proteins of Floral MADS-Box Genes in Basal Eudicots: Implications for Evolution of the Regulatory Network for Flower Development. MOLECULAR BIOLOGY AND EVOLUTION[J]. 2010, 27(7): 1598-1611, http://dx.doi.org/10.1093/molbev/msq044.[61] Gao, Xingchun, Liang, Wanqi, Yin, Changsong, Ji, Shenmin, Wang, Hongmei, Su, Xiao, Guo, Chunce, Kong, Hongzhi, Xue, Hongwei, Zhang, Dabing. The SEPALLATA-Like Gene OsMADS34 Is Required for Rice Inflorescence and Spikelet Development. PLANTPHYSIOLOGY[J]. 2010, 153(2): 728-740, http://ir.ibcas.ac.cn/handle/151111/7636.[62] 山红艳, 薛皓月, 徐桂霞, 国春策, 孔宏智. 拟南芥和琴叶拟南芥中MADS-box基因的比较进化分析. 生物多样性[J]. 2010, 109-119, http://lib.cqvip.com/Qikan/Article/Detail?id=33446988.[63] 袁明, 王小菁, 王台, 孔宏智, 许亦农, 蒋高明, 种康, 杨维才, 瞿礼嘉. 2008年中国植物科学若干领域重要研究进展. 植物学报[J]. 2009, 379-409, http://lib.cqvip.com/Qikan/Article/Detail?id=31229971.[64] Xuelu Wang, Hongzhi Kong, Hong Ma. F-box proteins regulate ethylene signaling and more. GENES AND DEVELOPMENT[J]. 2009, 23(4): 391-396, http://ir.ibcas.ac.cn/handle/151111/4515.[65] 瞿礼嘉, 王小菁, 王台, 杨维才, 许亦农, 袁明, 蒋高明, 孔宏智, 种康. 2007年中国植物科学若干领域重要研究进展. 植物学报[J]. 2009, 44(1): 2-26, http://lib.cqvip.com/Qikan/Article/Detail?id=29205076.[66] Shan, Hongyan, Zahn, Laura, Guindon, Stephane, Wall, P Kerr, Kong, Hongzhi, Ma, Hong, dePamphilis, Claude W, LeebensMack, Jim. Evolution of Plant MADS Box Transcription Factors: Evidence for Shifts in Selection Associated with Early Angiosperm Diversification and Concerted Gene Duplications. MOLECULAR BIOLOGY AND EVOLUTION[J]. 2009, 26(10): 2229-2244, http://ir.ibcas.ac.cn/handle/151111/4517.[67] Wang, Xuelu, Kong, Hongzhi, Ma, Hong. F-box proteins regulate ethylene signaling and more. GENES & DEVELOPMENT[J]. 2009, 23(4): 391-396, http://ir.ibcas.ac.cn/handle/151111/4515.[68] Xu, Guixia, Ma, Hong, Nei, Masatoshi, Kong, Hongzhi. Evolution of F-box genes in plants: Different modes of sequence divergence and their relationships with functional diversification. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2009, 106(3): 835-840, http://ir.ibcas.ac.cn/handle/151111/4513.[69] Xu, Guixia, Ma, Hong, Nei, Masatoshi, Kong, Hongzhi. Evolution of F-box genes in plants: Different modes of sequence divergence and their relationships with functional diversification. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2009, 106(3): 835-840, http://dx.doi.org/10.1073/pnas.0812043106.[70] Quan, Li, Xiao, Rong, Li, Wuxing, Oh, SungAeong, Kong, Hongzhi, Ambrose, J Christian, Malcos, Jennelle L, Cyr, Richard, Twell, David, Ma, Hong. Functional divergence of the duplicated AtKIN14a and AtKIN14b genes: critical roles in Arabidopsis meiosis and gametophyte development. PLANT JOURNAL[J]. 2008, 53(6): 1013-1026, https://www.webofscience.com/wos/woscc/full-record/WOS:000253827600011.[71] 种康, 瞿礼嘉, 袁明, 王小菁, 杨维才, 王台, 许亦农, 蒋高明, 孔宏智. 2006年中国植物科学若干领域重要研究进展. 植物学通报[J]. 2007, 24(3): 253-271, http://lib.cqvip.com/Qikan/Article/Detail?id=24563216.[72] Hongzhi Kong, Lena L Landherr, Michael W Frohlich, Jim Leebensmack, Hong Ma, Claude W Depamphilis. Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth. THE PLANT JOURNAL[J]. 2007, 50(5): 873-885, http://ir.ibcas.ac.cn/handle/151111/4161.[73] Xu, Guixia, Kong, Hongzhi. Duplication and divergence of floral MADS-box genes in grasses: Evidence for the generation and modification of novel regulators. JOURNAL OF INTEGRATIVE PLANT BIOLOGY[J]. 2007, 49(6): 927-939, http://lib.cqvip.com/Qikan/Article/Detail?id=24595395.[74] Kong, Hongzhi, Landherr, Lena L, Frohlich, Michael W, LeebensMack, Jim, Ma, Hong, dePamphilis, Claude W. Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth. PLANT JOURNAL[J]. 2007, 50(5): 873-885, http://dx.doi.org/10.1111/j.1365-313X.2007.03097.x.[75] Zhu, XinYu, Chase, Mark W, Qiu, YinLong, Kong, HongZhi, Dilcher, David L, Li, JianHua, Chen, ZhiDuan. Mitochondrial matR sequences help to resolve deep phylogenetic relationships in rosids. BMC EVOLUTIONARY BIOLOGY[J]. 2007, 7: http://ir.ibcas.ac.cn/handle/151111/4157.[76] Shan, Hongyan, Zhan, Ning, Liu, Cuijing, Xu, Guixia, Zhang, Jian, Chen, Zhiduan, Kong, Hongzhi. Patterns of gene duplication and functional diversification during the evolution of the AP1/SQUA subfamily of plant MADS-box genes. MOLECULAR PHYLOGENETICS AND EVOLUTION[J]. 2007, 44(1): 26-41, http://dx.doi.org/10.1016/j.ympev.2007.02.016.[77] Guixia Xu, Hongzhi Kong. Duplication and Divergence of Floral MADS-Box Genes in Grasses: Evidence for the Generation and Modification of Novel Regulators. 植物学报:英文版[J]. 2007, 49(6): 927-939, http://lib.cqvip.com/Qikan/Article/Detail?id=24595395.[78] 孔宏智. Origins and evolution of the recA/RAD51 gene family: Evidence for ancient gene duplication and symbiotic gene transfer. Proceedings of the National Academy of Sciences USA. 2006, [79] Zahn, LM, King, HZ, LeebensMack, JH, Kim, S, Soltis, PS, Landherr, LL, Soltis, DE, dePamphilis, CW, Ma, H. The evolution of the SEPALLATA subfamily of MADS-Box genes: A preangiosperm origin with multiple duplications throughout angiosperm history. GENETICS[J]. 2005, 169(4): 2209-2223, http://dx.doi.org/10.1534/genetics.104.037770.[80] Kim S, Koh J, Yoo M J, Kong Hongzhi, Hu Yi, Ma Hong, Soltis P S, Soltis D E. Expression of floral MADS-box genes in basal angiosperms: Implication for the evolution of floral regulators. THE PLANT JOURNAL[J]. 2005, 43(5): 724-744, http://ir.ibcas.ac.cn/handle/151111/5801.[81] Kim S, Koh J, Yoo MJ, Kong HongZhi, Hu Yi, Ma Hong, Soltis PS, Soltis DE. Expression of floral MADS-box genes in basal angiosperms: Implication for the evolution of floral regulators. PLANT JOURNAL[J]. 2005, 43(5): 724-744, http://ir.ibcas.ac.cn/handle/151111/5801.[82] Wang, GF, Kong, HZ, Sun, YJ, Zhang, XH, Zhang, W, Altman, N, dePamphilis, CW, Ma, H. Genome-wide analysis of the cyclin family in Arabidopsis and comparative phylogenetic analysis of plant cyclin-like proteins. PLANT PHYSIOLOGY[J]. 2004, 135(2): 1084-1099, https://www.webofscience.com/wos/woscc/full-record/WOS:000222165300050.[83] Kong, HZ, LeebensMack, J, Ni, WM, dePamphilis, CW, Ma, H. Highly heterogeneous rates of evolution in the SKP1 gene family in plants and animals: Functional and evolutionary implications. MOLECULAR BIOLOGY AND EVOLUTION[J]. 2004, 21(1): 117-128, http://dx.doi.org/10.1093/molbev/msh001.[84] 李贵生, 孟征, 孔宏智, 陈之端, 路安民. ABC模型与花进化研究. 科学通报[J]. 2003, 48(23): 2415-2421, http://lib.cqvip.com/Qikan/Article/Detail?id=8822512.[85] 孔宏智. Phylogenetic relationships within Chloranthus Sw. (Chloranthaceae) based on nuclear ITS and plastid trnL-F sequence data. American Journal of Botany. 2002, [86] 孔宏智. Floral organogenesis of Chloranthus sessilifolius K. F. Wu (Chloranthaceae) with special emphasis on the morphological nature of the androecium of Chloranthus Sw.. Plant Systematics and Evolution. 2002, [87] Kong, HZ. Comparative morphology of leaf epidermis in the Chloranthaceae. BOTANICAL JOURNAL OF THE LINNEAN SOCIETY[J]. 2001, 136(3): 279-294, http://dx.doi.org/10.1006/bojl.2001.0442.[88] 孔宏智, 陈之端. 金粟兰属的系统发育:核糖体DNAITS区序列的证据(英文). 植物学报[J]. 2000, 42(7): 762-, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=920999&detailType=1.[89] 孔宏智, 陈之端. 金粟兰属的系统发育:核糖体DNA ITS区序列的证据. 植物学报:英文版[J]. 2000, 42(7): 762-764, http://lib.cqvip.com/Qikan/Article/Detail?id=4312192.[90] 孔宏智. 金粟兰属的系统学研究. 2000, 116-, http://ir.ibcas.ac.cn/handle/2S10CLM1/13986.[91] 孔宏智. 宽叶金粟兰及其近缘类群的修订. 植物分类学报[J]. 2000, 38(4): 355-, http://lib.cqvip.com/Qikan/Article/Detail?id=4449785.[92] 孔宏智. Taxonomic notes on Chloranthus henryi Hemsl. and its allies. Acta Phytotaxonomica Sinica. 2000, [93] 孔宏智. Karyotypes of Sarcandra Gardn. and Chloranthus Sw. (Chloranthaceae) from China. Botanical Journal of the Linnean Society. 2000, [94] 杨冬之, 钱韦, 刘忠, 孔宏智. 评统一进化理论:与陈继明先生商榷. 科学通报[J]. 2000, 45(8): 885-, http://lib.cqvip.com/Qikan/Article/Detail?id=4395167.[95] Kong, HZ, Chen, ZD. Phylogeny in Chloranthus Swartz (Chloranthaceae) inferred from sequence analysis of nrDNA ITS region. ACTA BOTANICA SINICA[J]. 2000, 42(7): 762-764, https://www.webofscience.com/wos/woscc/full-record/WOS:000088663700020.[96] 孔宏智. Karyomorphology of the genus Pomatosace Maxim. (Primulaceae).. Acta Phytotaxonomica Sinica. 1999, [97] 杨亲二, 孔宏智. 星叶草属的核形态及其系统位置. 植物分类学报[J]. 1997, 35(6): 494-, http://lib.cqvip.com/Qikan/Article/Detail?id=2763035.[98] 孔宏智. Karyomorphology and relationships of the genus Circaeaster Maxim.. Acta Phytotaxonomica Sinica. 1997,