0710J3-生物信息学

小麦群体遗传学
生物网络分析
生物大数据挖掘

2006-09--2011-06   中国农业大学   理学博士 （生物信息学）
2002-09--2006-06   西南大学   理学学士 （生物学）

   

2016-06~2021-06,堪萨斯州立大学 （美国）, 博士后 (Postdoc Follow)
2015-07~2016-06,伊利诺伊大学厄巴纳-香槟分校 （美国）, 访问学者 (Visiting scholar)
2012-08~2016-06,布鲁克海文国家实验室（美国）, 博士后 (Research Associate)
2011-07~2012-07,纪念斯隆凯特琳癌症中心 （美国）, 博士后 （Research Fellow）

RNAseq data analysis

   

（1） Differential chromatin accessibility landscape reveals the structural and functional features of the allopolyploid wheat chromosomes, Genome Biology, 2020, 第 2 作者
（2） Exome sequencing highlights the role of wild relative introgression in shaping the adaptive landscape of the wheat genome, Nature genetics, 2019, 第 1 作者
（3） Multivariable regulation of gene expression plasticity in metazoans, Open Biology, 2019, 通讯作者
（4） PlaD: a transcriptomics database for plant defense responses to pathogens, providing new insights into plant immune system, Genomics, Proteomics&Bioinformatics, 2018, 通讯作者
（5） KBase: the United States Department Of Energy systems biology Knowledgebase, Nature Biotechnology, 2018, 其他（合作组作者）
（6） The genetic architecture of genome-wide recombination rate variation in allopolyploid wheat revealed by nested association mapping, Plant Journal, 2018, 第 3 作者
（7） Large-scale atlas of microarray data reveals the distinct expression landscape of different tissues in Arabidopsis, Plant Journal, 2016, 第 1 作者
（8） Large-scale public transcriptomic data mining reveals a tight connection between the transport of nitrogen and other transport processes in Arabidopsis, Frontiers in Plant Science, 2016, 通讯作者
（9） Pan-and core-network analysis of co-expression genes in a model plant, Scientific Reports, 2016, 通讯作者
（10） Differential coexpression analysis reveals extensive rewiring of arabidopsis gene coexpression in response to pseudomonas syringae infection, Scientific Reports, 2016, 通讯作者
（11） DREISS: using state-space models to infer the dynamics of gene expression driven by external and internal regulatory networks, PLoS Computational Biology, 2016, 第 2 作者
（12） De novo inference of systems-level mechanistic models of development from live-imaging-based phenotype analysis, Cell, 2014, 第 3 作者
（13） Deciphering the Arabidopsis floral transition process by integrating a protein-protein interaction network and gene expression data., Plant Physiology, 2010, 第 1 作者
（14） The prediction of protein-protein interaction networks in rice blast fungus, BMC Genomics, 2008, 第 1 作者

   

（1）Exome sequencing highlights the role of wild relative introgression in shaping the adaptive landscape of the wheat genome   2020-01-11