基本信息
![](/self/img/bf104049-0b45-4535-8dde-c296b27c8a9e.jpg)
梁承志 男 博导 中国科学院遗传与发育生物学研究所
电子邮件: cliang@genetics.ac.cn
通信地址: 北京市朝阳区北辰西路1号院2号
邮政编码: 100101
电子邮件: cliang@genetics.ac.cn
通信地址: 北京市朝阳区北辰西路1号院2号
邮政编码: 100101
研究领域
新基因组测序、组装、注释
- 水稻基因组测序:结合二、三代测序和大片段DNA文库,比如BAC库、Fosmid文库,现已构建出一个接近完成的高质量籼稻参考基因组。
- 小麦基因组测序:结合二、三代测序和BAC文库,构建高质量的二倍体和六倍体参考基因组。
- 其它多个物种基因组测序:以三代测序为主的基因组组装。
水稻等群体基因型分析及GWAS
基因调控网络:利用RNA-seq数据为主进行基因共表达网络的构建
组学数据整合、分析、和数据库建设
招生信息
招生专业
0710J3-生物信息学
086000-生物与医药
086000-生物与医药
招生方向
基因组大数据分析
生物信息数据库和软件开发
生物信息数据库和软件开发
教育背景
1999-01--2001-06 加拿大Waterloo大学计算机系 硕士
1992-09--1995-07 中科院遗传所 博士
1985-09--1989-07 武汉大学 学士
1992-09--1995-07 中科院遗传所 博士
1985-09--1989-07 武汉大学 学士
工作经历
工作简历
2012-02~现在, 中科院遗传发育所, 研究员
2009-12~2012-02,菲律宾国际水稻所, Scientist/Crop Information Systems Specialist
2004-10~2009-11,美国冷泉港实验室, Scientific Informatics Manager I
2003-07~2004-10,美国University of Maryland Biotechnology Institute, Research Associate
2001-07~2003-06,加拿大Bioinformatics Solutions公司, Bioinformatics Scientist
1996-06~1998-12,美国purdue大学昆虫系, postdoctoral Research Associate
2009-12~2012-02,菲律宾国际水稻所, Scientist/Crop Information Systems Specialist
2004-10~2009-11,美国冷泉港实验室, Scientific Informatics Manager I
2003-07~2004-10,美国University of Maryland Biotechnology Institute, Research Associate
2001-07~2003-06,加拿大Bioinformatics Solutions公司, Bioinformatics Scientist
1996-06~1998-12,美国purdue大学昆虫系, postdoctoral Research Associate
社会兼职
2019-01-01-2023-12-31,植物学报编委,
2014-04-01-今,中国生物工程学会计算生物学与生物信息学专家委员会,
2014-04-01-今,中国生物工程学会计算生物学与生物信息学专家委员会,
专利与奖励
奖励信息
(1) 中国科学院优秀导师奖, , 院级, 2021
(2) 中国科学院“优秀导师奖”, 院级, 2020
(3) Genomics, Proteomics and Bioinformatics杂志评选的2019年度“中国生物信息学十大进展”, 其他, 2019
(2) 中国科学院“优秀导师奖”, 院级, 2020
(3) Genomics, Proteomics and Bioinformatics杂志评选的2019年度“中国生物信息学十大进展”, 其他, 2019
出版信息
发表论文
[1] Shi, Wenwen, 梁承志. VDGE: a data repository of variation database for gene-edited animals across multiple species. Nucleic Acids Research[J]. 2024, 第 2 作者null(null): https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkae956/7848839.
[2] Deng, Buhao, Wang, Jingyi, Yang, Tingyun, Deng, Zhao, Yuan, Jiafan, Zhang, Bohan, Zhou, Zhen, Chen, Fang, Fang, Lu, Liang, Chengzhi, Yan, Bo, Ai, Youwei. TNF and IFNγ-induced cell death requires IRF1 and ELAVL1 to promote CASP8 expression. JOURNAL OF CELL BIOLOGY[J]. 2024, 第 10 作者223(3): http://dx.doi.org/10.1083/jcb.202305026.
[3] XiaoMei Xia, HuiLong Du, XiaoDi Hu, JingJie Wu, FuSheng Yang, CongLi Li, SiXin Huang, Qiang Wang, Chengzhi Liang, XiaoQuan Wang. Genomic insights into adaptive evolution of the species-rich cosmopolitan plant genus Rhododendron. CELL REPORTS[J]. 2024, 第 9 作者 通讯作者 43(10): 114745, https://doaj.org/article/6b9a0f17bc2948af8724a8001a990445.
[4] 景海春, 张景昱, 金京波, 刘志鹏, 张保才, 付春祥, 程佑发, 林浩, 才宏伟, 梁承志, 周姚, 曹晓风, 种康. 饲草作物基础生物学与生物育种. 中国科学基金[J]. 2023, 第 10 作者37(4): 537-551, http://lib.cqvip.com/Qikan/Article/Detail?id=7110766659.
[5] Sun, Yanling, Liu, Yang, Shi, Jinfeng, Wang, Lun, Liang, Chengzhi, Yang, Jun, Chen, Jinfeng, Chen, Mingsheng. Biased mutations and gene losses underlying diploidization of the tetraploid broomcorn millet genome. PLANT JOURNAL[J]. 2023, 第 5 作者113(4): 787-801, http://dx.doi.org/10.1111/tpj.16085.
[6] Ruoyang Hu, Xuedong Li, Yong Hu, Runjie Zhang, Qiang Lv, Min Zhang, Xianyong Sheng, Feng Zhao, Zhijia Chen, Yuhan Ding, Huan Yuan, Xiaofeng Wu, Shuang Xing, Xiaoyu Yan, Fang Bao, Ping Wan, Lihong Xiao, Xiaoqin Wang, Wei Xiao, Eva L Decker, Nico van Gessel, Hugues Renault, Gertrud Wiedemann, Nelly A Horst, Fabian B Haas, Per KI Wilhelmsson, Kristian K Ullrich, Eva Neumann, Bin Lv, Chengzhi Liang, Huilong Du, Hongwei Lu, Qiang Gao, Zhukuan Cheng, Hanli You, Peiyong Xin, Jinfang Chu, ChienHsun Huang, Yang Liu, Shanshan Dong, Liangsheng Zhang, Fei Chen, Lei Deng, Fuzhou Duan, Wenji Zhao, Kai Li, Zhongfeng Li, Xingru Li, Hengjian Cui, Yong E Zhang, Chuan Ma, Ruiliang Zhu, Yu Jia, Meizhi Wang, Mitsuyasu Hasebe, Jinzhong Fu, Bernard Goffinet, Hong Ma, Stefan A Rensing, Ralf Reski, Yikun He. Adaptive evolution of the enigmatic Takakia now facing climate change in Tibet. CELL[J]. 2023, 第 30 作者186(17): 3558-3576.e17, http://dx.doi.org/10.1016/j.cell.2023.07.003.
[7] QiangHe, DanMa, WeiLi, LongshengXing, HongyuZhang, YuWang, CailianDu, XuanzhaoLi, ZhengJia, XiuxiuLi, JiananLiu, ZeLiu, YuqingMiao, RuiFeng, YangLv, MeijiaWang, HongweiLu, XiaochenLi, YaoXiao, RuyuWang, HanfeiLiang, QinghongZhou, LijunZhang, ChengzhiLiang, HuilongDu. High-quality Fagopyrum esculentum genome provides insights into the flavonoid accumulation among different tissues and self-incompatibility. Journal of Integrative Plant Biology[J]. 2023, 第 24 作者 通讯作者 65(6): 1423-1441, https://www.jipb.net/EN/10.1111/jipb.13459.
[8] Chao, Jinquan, Wu, Shaohua, Shi, Minjing, Xu, Xia, Gao, Qiang, Du, Huilong, Gao, Bin, Guo, Dong, Yang, Shuguang, Zhang, Shixin, Li, Yan, Fan, Xiuli, Hai, Chunyan, Kou, Liquan, Zhang, Jiao, Wang, Zhiwei, Li, Yan, Xue, Wenbo, Xu, Jiang, Deng, Xiaomin, Huang, Xiao, Gao, Xinsheng, Zhang, Xiaofei, Hu, Yanshi, Zeng, Xia, Li, Weiguo, Zhang, Liangsheng, Peng, Shiqing, Wu, Jilin, Hao, Bingzhong, Wang, Xuchu, Yu, Hong, Li, Jiayang, Liang, Chengzhi, Tian, WeiMin. Genomic insight into domestication of rubber tree. NATURE COMMUNICATIONS[J]. 2023, 第 34 作者 通讯作者 14(1): http://dx.doi.org/10.1038/s41467-023-40304-y.
[9] Wang, Wei, Qin, Li, Zhang, Wenjing, Tang, Linghui, Zhang, Chao, Dong, Xiaojing, Miao, Pei, Shen, Meng, Du, Huilong, Cheng, Hangyuan, Wang, Ke, Zhang, Xiangyun, Su, Min, Lu, Hongwei, Li, Chang, Gao, Qiang, Zhang, Xiaojuan, Huang, Yun, Liang, Chengzhi, Zhou, JianMin, Chen, Yuhang. WeiTsing, a pericycle-expressed ion channel, safeguards the stele to confer clubroot resistance. CELL[J]. 2023, 第 19 作者186(12): 2656-+, http://dx.doi.org/10.1016/j.cell.2023.05.023.
[10] 金京波, 梁承志. 饲草基因组学研究进展. 植物学报[J]. 2022, 第 2 作者57(6): 1-10,
[11] Xiaoli Shi, Fa Cui, Xinyin Han, Yilin He, Long Zhao, Na Zhang, Hao Zhang, Haidong Zhu, Zhexin Liu, Bin Ma, Shusong Zheng, Wei Zhang, Jiajia Liu, Xiaoli Fan, Yaoqi Si, Shuiquan Tian, Jianqing Niu, Huilan Wu, Xuemei Liu, Zhuo Chen, Deyuan Meng, Xiaoyan Wang, Liqiang Song, Lijing Sun, Jie Han, Hui Zhao, Jun Ji, Zhiguo Wang, Xiaoyu He, Ruilin Li, Xuebin Chi, Chengzhi Liang, Beifang Niu, Jun Xiao, Junming Li, HongQing Ling. Comparative genomic and transcriptomic analyses uncover the molecular basis of high nitrogen-use efficiency in the wheat cultivar Kenong 9204. Molecular Plant[J]. 2022, 第 32 作者 通讯作者 15(9): 1440-1456, http://dx.doi.org/10.1016/j.molp.2022.07.008.
[12] Lin, Tao, Xu, Xia, Du, Huilong, Fan, Xiuli, Chen, Qingwen, Hai, Chunyan, Zhou, Zijian, Su, Xiao, Kou, Liquan, Gao, Qiang, Deng, Lingwei, Jiang, Jinsheng, You, Hanli, Ma, Yihua, Cheng, Zhukuan, Wang, Guodong, Liang, Chengzhi, Zhang, Guomin, Yu, Hong, Li, Jiayang. Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum. SCIENCE CHINA-LIFE SCIENCES[J]. 2022, 第 17 作者 通讯作者 65(3): 515-528, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000733867700001.
[13] Shen, Yanting, Zhou, Guoan, Liang, Chengzhi, Tian, Zhixi. Omics-based interdisciplinarity is accelerating plant breeding. CURRENT OPINION IN PLANT BIOLOGY. 2022, 第 3 作者66: http://dx.doi.org/10.1016/j.pbi.2021.102167.
[14] Lin, Tao, Xu, Xia, Du, Huilong, Fan, Xiuli, Chen, Qingwen, Hai, Chunyan, Zhou, Zijian, Su, Xiao, Kou, Liquan, Gao, Qiang, Deng, Lingwei, Jiang, Jinsheng, You, Hanli, Ma, Yihua, Cheng, Zhukuan, Wang, Guodong, Liang, Chengzhi, Zhang, Guomin, Yu, Hong, Li, Jiayang. Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum. SCIENCE CHINA-LIFE SCIENCES. 2021, 第 17 作者 通讯作者
[15] Chao Huang, Zhuo Chen, Chengzhi Liang. Oryza pan-genomics: A new foundation for future rice research and improvement. THE CROP JOURNAL[J]. 2021, 第 3 作者 通讯作者 9(3): 622-632, http://dx.doi.org/10.1016/j.cj.2021.04.003.
[16] Huang, Chao, Chen, Zhuo, Liang, Chengzhi. Oryza pan-genomics: A new foundation for future rice research and improvement. CROP JOURNAL. 2021, 第 3 作者 通讯作者 9(3): 622-632, http://lib.cqvip.com/Qikan/Article/Detail?id=7104813324.
[17] Xie, Xianrong, Du, Huilong, Tang, Huiwu, Tang, Jianian, Tan, Xiyu, Liu, Weizhi, Li, Tie, Lin, Zhansheng, Liang, Chengzhi, Liu, YaoGuang. A chromosome-level genome assembly of the wild riceOryza rufipogonfacilitates tracing the origins of Asian cultivated rice. SCIENCE CHINA-LIFE SCIENCES[J]. 2021, 第 9 作者 通讯作者 64(2): 282-293, http://lib.cqvip.com/Qikan/Article/Detail?id=7103978098.
[18] Yu, Hong, Lin, Tao, Meng, Xiangbing, Du, Huilong, Zhang, Jingkun, Liu, Guifu, Chen, Mingjiang, Jing, Yanhui, Kou, Liquan, Li, Xiuxiu, Gao, Qiang, Liang, Yan, Liu, Xiangdong, Fan, Zhilan, Liang, Yuntao, Cheng, Zhukuan, Chen, Mingsheng, Tian, Zhixi, Wang, Yonghong, Chu, Chengcai, Zuo, Jianru, Wan, Jianmin, Qian, Qian, Han, Bin, Zuccolo, Andrea, Wing, Rod A, Gao, Caixia, Liang, Chengzhi, Li, Jiayang. A route to de novo domestication of wild allotetraploid rice. CELL[J]. 2021, 第 28 作者 通讯作者 184(5): 1156-+, http://dx.doi.org/10.1016/j.cell.2021.01.013.
[19] Qin, Peng, Lu, Hongwei, Du, Huilong, Wang, Hao, Chen, Weilan, Chen, Zhuo, He, Qiang, Ou, Shujun, Zhang, Hongyu, Li, Xuanzhao, Li, Xiuxiu, Li, Yan, Liao, Yi, Gao, Qiang, Tu, Bin, Yuan, Hua, Ma, Bingtian, Wang, Yuping, Qian, Yangwen, Fan, Shijun, Li, Weitao, Wang, Jing, He, Min, Yin, Junjie, Li, Ting, Jiang, Ning, Chen, Xuewei, Liang, Chengzhi, Li, Shigui. Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations. CELL[J]. 2021, 第 28 作者 通讯作者 184(13): 3542-+, http://dx.doi.org/10.1016/j.cell.2021.04.046.
[20] Chen, Zhuo, Li, Xiuxiu, Lu, Hongwei, Gao, Qiang, Du, Huilong, Peng, Hua, Qin, Peng, Liang, Chengzhi. Genomic atlases of introgression and differentiation reveal breeding footprints in Chinese cultivated rice. JOURNAL OF GENETICS AND GENOMICS[J]. 2020, 第 8 作者 通讯作者 47(10): 637-649, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=6913536&detailType=1.
[21] 梁承志. A chromosome-level genome assembly of the wild rice Oryza rufipogon facilitates tracing the origins of Asian cultivated rice. Science China Life Sciences. 2020, 第 1 作者 通讯作者
[22] 赵宇慧, 李秀秀, 陈倬, 鲁宏伟, 刘羽诚, 张志方, 梁承志. 生物信息学分析方法Ⅰ:全基因组关联分析概述. 植物学报[J]. 2020, 第 7 作者18, https://kns.cnki.net/KCMS/detail/detail.aspx?dbcode=CJFD&dbname=CJFDAUTO&filename=ZWXT202006006&v=MDAyMzVrVTcvT1B6clRlckc0SE5ITXFZOUZZb1I4ZVgxTHV4WVM3RGgxVDNxVHJXTTFGckNVUjd1Zlp1UnZGQ3Y=.
[23] Li, Xiuxiu, Chen, Zhuo, Zhang, Guomin, Lu, Hongwei, Qin, Peng, Qi, Ming, Yu, Ying, Jiao, Bingke, Zhao, Xianfeng, Gao, Qiang, Wang, Hao, Wu, Yunyu, Ma, Juntao, Zhang, Liyan, Wang, Yongli, Deng, Lingwei, Yao, Shanguo, Cheng, Zhukuang, Yu, Diqiu, Zhu, Lihuang, Xue, Yongbiao, Chu, Chengcai, Li, Aihong, Li, Shigui, Liang, Chengzhi. Analysis of genetic architecture and favorable allele usage of agronomic traits in a large collection of Chinese rice accessions. SCIENCE CHINA-LIFE SCIENCES[J]. 2020, 第 25 作者 通讯作者 63(11): 1688-1702, https://www.sciengine.com/doi/10.1007/s11427-019-1682-6.
[24] Shen, Chen, Du, Huilong, Chen, Zhuo, Lu, Hongwei, Zhu, Fugui, Chen, Hong, Meng, Xiangzhao, Liu, Qianwen, Liu, Peng, Zheng, Lihua, Li, Xiuxiu, Dong, Jiangli, Liang, Chengzhi, Wang, Tao. The Chromosome-Level Genome Sequence of the Autotetraploid Alfalfa and Resequencing of Core Germplasms Provide Genomic Resources for Alfalfa Research. MOLECULAR PLANT[J]. 2020, 第 13 作者 通讯作者 13(9): 1250-1261, http://lib.cqvip.com/Qikan/Article/Detail?id=7103401570.
[25] Liu, Hongbing, Shi, Junpeng, Cai, Zexi, Huang, Yumin, Lv, Menglu, Du, Huilong, Gao, Qiang, Zuo, Yi, Dong, Zhaobin, Huang, Wei, Qin, Rui, Liang, Chengzhi, Lai, Jinsheng, Jin, Weiwei. Evolution and Domestication Footprints Uncovered from the Genomes of Coix. MOLECULAR PLANT[J]. 2020, 第 12 作者13(2): 295-308, http://lib.cqvip.com/Qikan/Article/Detail?id=7101522862.
[26] Liu, Yucheng, Du, Huilong, Li, Pengcheng, Shen, Yanting, Peng, Hua, Liu, Shulin, Zhou, GuoAn, Zhang, Haikuan, Liu, Zhi, Shi, Miao, Huang, Xuehui, Li, Yan, Zhang, Min, Wang, Zheng, Zhu, Baoge, Han, Bin, Liang, Chengzhi, Tian, Zhixi. Pan-Genome of Wild and Cultivated Soybeans. CELL[J]. 2020, 第 17 作者 通讯作者 182(1): 162-+, http://dx.doi.org/10.1016/j.cell.2020.05.023.
[27] Peng, Hua, Wang, Kai, Chen, Zhuo, Cao, Yinghao, Gao, Qiang, Li, Yan, Li, Xiuxiu, Lu, Hongwei, Du, Huilong, Lu, Min, Yang, Xin, Liang, Chengzhi. MBKbase for rice: an integrated omics knowledgebase for molecular breeding in rice. NUCLEIC ACIDS RESEARCH[J]. 2020, 第 12 作者 通讯作者 48(D1): D1085-D1092, https://www.webofscience.com/wos/woscc/full-record/WOS:000525956700139.
[28] Li, Miaomiao, Zhang, Dongfen, Gao, Qiang, Luo, Yingfeng, Zhang, Hui, Ma, Bin, Chen, Chunhai, Whibley, Annabel, Zhang, Yue, Cao, Yinghao, Li, Qun, Guo, Han, Li, Junhui, Song, Yanzhai, Zhang, Yue, Copsey, Lucy, Li, Yan, Li, Xiuxiu, Qi, Ming, Wang, Jiawei, Chen, Yan, Wang, Dan, Zhao, Jinyang, Liu, Guocheng, Wu, Bin, Yu, Lili, Xu, Chunyan, Li, Jiang, Zhao, Shancen, Zhang, Yijing, Hu, Songnian, Liang, Chengzhi, Yin, Ye, Coen, Enrico, Xue, Yongbiao. Genome structure and evolution of Antirrhinum majus L. NATURE PLANTS[J]. 2019, 第 32 作者 通讯作者 5(2): 174-+, http://dx.doi.org/10.1038/s41477-018-0349-9.
[29] 梁承志. 从作物基因组分析到整合组学知识库建设. 遗传[J]. 2019, 第 1 作者41(9): 875-882, http://www.chinagene.cn/CN/10.16288/j.yczz.19-121.
[30] Yu, Hua, Lu, Lu, Jiao, Bingke, Liang, Chengzhi. Systematic discovery of novel and valuable plant gene modules by large-scale RNA-seq samples. BIOINFORMATICS[J]. 2019, 第 4 作者 通讯作者 35(3): 361-364, http://dx.doi.org/10.1093/bioinformatics/bty642.
[31] Shen, Yanting, Du, Huilong, Liu, Yucheng, Ni, Lingbin, Wang, Zheng, Liang, Chengzhi, Tian, Zhixi. Update soybean Zhonghuang 13 genome to a golden reference. SCIENCE CHINA-LIFE SCIENCES. 2019, 第 6 作者 通讯作者 62(9): 1257-1260, https://www.sciengine.com/doi/10.1007/s11427-019-9822-2.
[32] Yanting Shen, Huilong Du, Yucheng Liu, Lingbin Ni, Zheng Wang, Chengzhi Liang, Zhixi Tian. Update soybean Zhonghuang 13 genome to a golden reference. 中国科学:生命科学英文版. 2019, 第 6 作者 通讯作者 62(9): 1257-1260, http://lib.cqvip.com/Qikan/Article/Detail?id=7002865574.
[33] Jin, Shuai, Zong, Yuan, Gao, Qiang, Zhu, Zixu, Wang, Yanpeng, Qin, Peng, Liang, Chengzhi, Wang, Daowen, Qiu, JinLong, Zhang, Feng, Gao, Caixia. Cytosine, but not adenine, base editors induce genome-wide off-target mutations in rice. SCIENCE[J]. 2019, 第 7 作者364(6437): 292-+, http://dx.doi.org/10.1126/science.aaw7166.
[34] Huilong Du, Chengzhi Liang. Assembly of chromosome-scale contigs by efficiently resolving repetitive sequences with long reads. NATURE COMMUNICATIONS[J]. 2019, 第 2 作者 通讯作者 10(1): 1-10, https://doaj.org/article/e4cb5234c1a7488d86300fa3e1c6f161.
[35] Xiao, Ning, Gao, Yong, Qian, Huangjun, Gao, Qiang, Wu, Yunyu, Zhang, Dongping, Zhang, Xiaoxiang, Yu, Ling, Li, Yuhong, Pan, Cunhong, Liu, Guangqing, Zhou, Changhai, Jiang, Min, Huang, Niansheng, Dai, Zhengyuan, Liang, Chengzhi, Chen, Zhou, Chen, Jianmin, Li, Aihong. Identification of Genes Related to Cold Tolerance and a Functional Allele That Confers Cold Tolerance. PLANT PHYSIOLOGY[J]. 2018, 第 16 作者177(3): 1108-1123, http://dx.doi.org/10.1104/pp.18.00209.
[36] Yu, Hua, Jiao, Bingke, Lu, Lu, Wang, Pengfei, Chen, Shuangcheng, Liang, Chengzhi, Liu, Wei. NetMiner-an ensemble pipeline for building genome-wide and high-quality gene co-expression network using massive-scale RNA-seq samples. PLOS ONE[J]. 2018, 第 6 作者 通讯作者 13(2): https://doaj.org/article/c1eff04c2bc74fe5b17a0818f87ef49c.
[37] Ling, HongQing, Ma, Bin, Shi, Xiaoli, Liu, Hui, Dong, Lingli, Sun, Hua, Cao, Yinghao, Gao, Qiang, Zheng, Shusong, Li, Ye, Yu, Ying, Du, Huilong, Qi, Ming, Li, Yan, Lu, Hongwei, Yu, Hua, Cui, Yan, Wang, Ning, Chen, Chunlin, Wu, Huilan, Zhao, Yan, Zhang, Juncheng, Li, Yiwen, Zhou, Wenjuan, Zhang, Bairu, Hu, Weijuan, van Eijk, Michiel J T, Tang, Jifeng, Witsenboer, Hanneke M A, Zhao, Shancen, Li, Zhensheng, Zhang, Aimin, Wang, Daowen, Liang, Chengzhi. Genome sequence of the progenitor of wheat A subgenome Triticum urartu. NATURE[J]. 2018, 第 34 作者 通讯作者 557(7705): 424-+, http://dx.doi.org/10.1038/s41586-018-0108-0.
[38] Wu, Zhigang, Fang, Dongming, Yang, Rui, Gao, Fei, An, Xingyu, Zhuo, Xiaoxuan, Li, Yafei, Yi, Chuandeng, Zhang, Tao, Liang, Chengzhi, Cui, Peng, Cheng, Zhukuan, Luo, Qiong. De novo genome assembly of Oryza granulata reveals rapid genome expansion and adaptive evolution. COMMUNICATIONS BIOLOGY[J]. 2018, 第 10 作者1(1): https://doaj.org/article/cc33911a89464f3bb920566cd76058a2.
[39] Zhang, GuoMin, Zheng, TianQing, Chen, Zhuo, Wang, YongLi, Wang, Ying, Shi, YuMin, Wang, ChunChao, Zhang, LiYan, Ma, JunTao, Deng, LingWei, Li, Wan, Xu, TianTian, Liang, ChengZhi, Xu, JianLong, Li, ZhiKang. Joint Exploration of Favorable Haplotypes for Mineral Concentrations in Milled Grains of Rice (Oryza sativa L.). FRONTIERS IN PLANT SCIENCE[J]. 2018, 第 13 作者9: https://doaj.org/article/84efe2cd61d04b808bb7177f6aef2a7d.
[40] Sun, Silong, Zhou, Yingsi, Chen, Jian, Shi, Junpeng, Zhao, Haiming, Zhao, Hainan, Song, Weibin, Zhang, Mei, Cui, Yang, Dong, Xiaomei, Liu, Han, Ma, Xuxu, Jiao, Yinping, Wang, Bo, Wei, Xuehong, Stein, Joshua C, Glaubitz, Jeff C, Lu, Fei, Yu, Guoliang, Liang, Chengzhi, Fengler, Kevin, Li, Bailin, Rafalski, Antoni, Schnable, Patrick S, Ware, Doreen H, Buckler, Edward S, Lai, Jinsheng. Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes. NATURE GENETICS[J]. 2018, 第 20 作者50(9): 1289-+, http://dx.doi.org/10.1038/s41588-018-0182-0.
[41] Liu, Lingtong, Lu, Yunlong, Wei, Liqin, Yu, Hua, Cao, Yinghao, Li, Yan, Yang, Ning, Song, Yunyun, Liang, Chengzhi, Wang, Tai. Transcriptomics analyses reveal the molecular roadmap and long non-coding RNA landscape of sperm cell lineage development. PLANT JOURNAL[J]. 2018, 第 9 作者 通讯作者 96(2): 421-437, http://dx.doi.org/10.1111/tpj.14041.
[42] Wang, Shiguang, Ma, Bingtian, Gao, Qiang, Jiang, Guojing, Zhou, Lei, Tu, Bin, Qin, Peng, Tan, Xueqin, Liu, Peixiong, Kang, Yunhai, Wang, Yuping, Chen, Weilan, Liang, Chengzhi, Li, Shigui. Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes. THEORETICAL AND APPLIED GENETICS[J]. 2018, 第 13 作者 通讯作者 131(6): 1391-1403, http://dx.doi.org/10.1007/s00122-018-3085-7.
[43] Huilong Du, Ying Yu, Yanfei Ma, Qiang Gao, Yinghao Cao, Zhuo Chen, Bin Ma, Ming Qi, Yan Li, Xianfeng Zhao, Jing Wang, Kunfan Liu, Peng Qin, Xin Yang, Lihuang Zhu, Shigui Li, Chengzhi Liang. Sequencing and de novo assembly of a near complete indica rice genome. NATURE COMMUNICATIONS[J]. 2017, 第 17 作者 通讯作者 8(1): https://doaj.org/article/c34a4a01b330408891d03cfd409507d7.
[44] Xiao, Ning, Wu, Yunyu, Pan, Cunhong, Yu, Ling, Chen, Yu, Liu, Guangqing, Li, Yuhong, Zhang, Xiaoxiang, Wang, Zhiping, Dai, Zhengyuan, Liang, Chengzhi, Li, Aihong. Improving of Rice Blast Resistances in Japonica by Pyramiding Major R Genes. FRONTIERS IN PLANT SCIENCE[J]. 2017, 第 11 作者 通讯作者 7: https://www.webofscience.com/wos/woscc/full-record/WOS:000391060300001.
[45] Liang, Chengzhen, Li, Aifu, Yu, Hua, Li, Wenzhen, Liang, Chengzhi, Guo, Sandui, Zhang, Rui, Chu, Chengcai. Melatonin Regulates Root Architecture by Modulating Auxin Response in Rice. FRONTIERS IN PLANT SCIENCE[J]. 2017, 第 5 作者8: http://dx.doi.org/10.3389/fpls.2017.00134.
[46] Zhang, Lijun, Li, Xiuxiu, Ma, Bin, Gao, Qiang, Du, Huilong, Han, Yuanhuai, Li, Yan, Cao, Yinghao, Qi, Ming, Zhu, Yaxin, Lu, Hongwei, Ma, Mingchuan, Liu, Longlong, Zhou, Jianping, Nan, Chenghu, Qin, Yongjun, Wang, Jun, Cui, Lin, Liu, Huimin, Liang, Chengzhi, Qiao, Zhijun. The Tartary Buckwheat Genome Provides Insights into Rutin Biosynthesis and Abiotic Stress Tolerance. MOLECULAR PLANT[J]. 2017, 第 20 作者 通讯作者 10(9): 1224-1237, http://lib.cqvip.com/Qikan/Article/Detail?id=673606553.
[47] Wu, Yunyu, Chen, Yu, Pan, Cunhong, Xiao, Ning, Yu, Ling, Li, Yuhong, Zhang, Xiaoxiang, Pan, Xuebiao, Chen, Xijun, Liang, Chengzhi, Dai, Zhengyuan, Li, Aihong. Development and Evaluation of Near-Isogenic Lines with Different Blast Resistance Alleles at the Piz Locus in japonica Rice from the Lower Region of the Yangtze River, China. PLANT DISEASE[J]. 2017, 第 10 作者101(7): 1283-1291, https://www.webofscience.com/wos/woscc/full-record/WOS:000403384200028.
[48] Li, Shaofeng, Fan, Chengming, Li, Yan, Zhang, Jianhui, Sun, Jingshuang, Chen, Yuhong, Tian, Changyan, Su, Xiaohua, Lu, Mengzhu, Liang, Chengzhi, Hu, Zanmin. Effects of drought and salt-stresses on gene expression in Caragana korshinskii seedlings revealed by RNA-seq. BMC GENOMICS[J]. 2016, 第 10 作者17(1): http://dx.doi.org/10.1186/s12864-016-2562-0.
[49] Li, Dejun, Zeng, Rizhong, Li, Yan, Zhao, Manman, Chao, Jinquan, Li, Yu, Wang, Kai, Zhu, Lihuang, Tian, WeiMin, Liang, Chengzhi. Gene expression analysis and SNP/InDel discovery to investigate yield heterosis of two rubber tree F1 hybrids. SCIENTIFIC REPORTS[J]. 2016, 第 10 作者 通讯作者 6: http://dx.doi.org/10.1038/srep24984.
[50] Wu, Yunyu, Yu, Ling, Pan, Cunhong, Dai, Zhengyuan, Li, Yuhong, Xiao, Ning, Zhang, Xiaoxiang, Ji, Hongjuan, Huang, Niansheng, Zhao, Buhong, Zhou, Changhai, Liu, Guangqing, Liu, Xiaojing, Pan, Xuebiao, Liang, Chengzhi, Li, Aihong. Development of near-isogenic lines with different alleles of Piz locus and analysis of their breeding effect under Yangdao 6 background. MOLECULAR BREEDING[J]. 2016, 第 15 作者36(2): https://www.webofscience.com/wos/woscc/full-record/WOS:000379158900001.
[51] Li, Dayong, Huang, Zhiyuan, Song, Shuhui, Xin, Yeyun, Mao, Donghai, Lv, Qiming, Zhou, Ming, Tian, Dongmei, Tang, Mingfeng, Wu, Qi, Liu, Xue, Chen, Tingting, Song, Xianwei, Fu, Xiqin, Zhao, Bingran, Liang, Chengzhi, Li, Aihong, Liu, Guozhen, Li, Shigui, Hu, Songnian, Cao, Xiaofeng, Yu, Jun, Yuan, Longping, Chen, Caiyan, Zhu, Lihuang. Integrated analysis of phenome, genome, and transcriptome of hybrid rice uncovered multiple heterosis-related loci for yield increase. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2016, 第 16 作者113(41): E6026-E6035, http://dx.doi.org/10.1073/pnas.1610115113.
[52] Chen, Jinfeng, Huang, Quanfei, Gao, Dongying, Wang, Junyi, Lang, Yongshan, Liu, Tieyan, Li, Bo, Bai, Zetao, Goicoechea, Jose Luis, Liang, Chengzhi, Chen, Chengbin, Zhang, Wenli, Sun, Shouhong, Liao, Yi, Zhang, Xuemei, Yang, Lu, Song, Chengli, Wang, Meijiao, Shi, Jinfeng, Liu, Geng, Liu, Junjie, Zhou, Heling, Zhou, Weili, Yu, Qiulin, An, Na, Chen, Yan, Cai, Qingle, Wang, Bo, Liu, Binghang, Min, Jiumeng, Huang, Ying, Wu, Honglong, Li, Zhenyu, Zhang, Yong, Yin, Ye, Song, Wenqin, Jiang, Jiming, Jackson, Scott A, Wing, Rod A, Wang, Jun, Chen, Mingsheng. Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution. NATURE COMMUNICATIONS[J]. 2013, 第 10 作者4: 1595, http://dx.doi.org/10.1038/ncomms2596.
[2] Deng, Buhao, Wang, Jingyi, Yang, Tingyun, Deng, Zhao, Yuan, Jiafan, Zhang, Bohan, Zhou, Zhen, Chen, Fang, Fang, Lu, Liang, Chengzhi, Yan, Bo, Ai, Youwei. TNF and IFNγ-induced cell death requires IRF1 and ELAVL1 to promote CASP8 expression. JOURNAL OF CELL BIOLOGY[J]. 2024, 第 10 作者223(3): http://dx.doi.org/10.1083/jcb.202305026.
[3] XiaoMei Xia, HuiLong Du, XiaoDi Hu, JingJie Wu, FuSheng Yang, CongLi Li, SiXin Huang, Qiang Wang, Chengzhi Liang, XiaoQuan Wang. Genomic insights into adaptive evolution of the species-rich cosmopolitan plant genus Rhododendron. CELL REPORTS[J]. 2024, 第 9 作者 通讯作者 43(10): 114745, https://doaj.org/article/6b9a0f17bc2948af8724a8001a990445.
[4] 景海春, 张景昱, 金京波, 刘志鹏, 张保才, 付春祥, 程佑发, 林浩, 才宏伟, 梁承志, 周姚, 曹晓风, 种康. 饲草作物基础生物学与生物育种. 中国科学基金[J]. 2023, 第 10 作者37(4): 537-551, http://lib.cqvip.com/Qikan/Article/Detail?id=7110766659.
[5] Sun, Yanling, Liu, Yang, Shi, Jinfeng, Wang, Lun, Liang, Chengzhi, Yang, Jun, Chen, Jinfeng, Chen, Mingsheng. Biased mutations and gene losses underlying diploidization of the tetraploid broomcorn millet genome. PLANT JOURNAL[J]. 2023, 第 5 作者113(4): 787-801, http://dx.doi.org/10.1111/tpj.16085.
[6] Ruoyang Hu, Xuedong Li, Yong Hu, Runjie Zhang, Qiang Lv, Min Zhang, Xianyong Sheng, Feng Zhao, Zhijia Chen, Yuhan Ding, Huan Yuan, Xiaofeng Wu, Shuang Xing, Xiaoyu Yan, Fang Bao, Ping Wan, Lihong Xiao, Xiaoqin Wang, Wei Xiao, Eva L Decker, Nico van Gessel, Hugues Renault, Gertrud Wiedemann, Nelly A Horst, Fabian B Haas, Per KI Wilhelmsson, Kristian K Ullrich, Eva Neumann, Bin Lv, Chengzhi Liang, Huilong Du, Hongwei Lu, Qiang Gao, Zhukuan Cheng, Hanli You, Peiyong Xin, Jinfang Chu, ChienHsun Huang, Yang Liu, Shanshan Dong, Liangsheng Zhang, Fei Chen, Lei Deng, Fuzhou Duan, Wenji Zhao, Kai Li, Zhongfeng Li, Xingru Li, Hengjian Cui, Yong E Zhang, Chuan Ma, Ruiliang Zhu, Yu Jia, Meizhi Wang, Mitsuyasu Hasebe, Jinzhong Fu, Bernard Goffinet, Hong Ma, Stefan A Rensing, Ralf Reski, Yikun He. Adaptive evolution of the enigmatic Takakia now facing climate change in Tibet. CELL[J]. 2023, 第 30 作者186(17): 3558-3576.e17, http://dx.doi.org/10.1016/j.cell.2023.07.003.
[7] QiangHe, DanMa, WeiLi, LongshengXing, HongyuZhang, YuWang, CailianDu, XuanzhaoLi, ZhengJia, XiuxiuLi, JiananLiu, ZeLiu, YuqingMiao, RuiFeng, YangLv, MeijiaWang, HongweiLu, XiaochenLi, YaoXiao, RuyuWang, HanfeiLiang, QinghongZhou, LijunZhang, ChengzhiLiang, HuilongDu. High-quality Fagopyrum esculentum genome provides insights into the flavonoid accumulation among different tissues and self-incompatibility. Journal of Integrative Plant Biology[J]. 2023, 第 24 作者 通讯作者 65(6): 1423-1441, https://www.jipb.net/EN/10.1111/jipb.13459.
[8] Chao, Jinquan, Wu, Shaohua, Shi, Minjing, Xu, Xia, Gao, Qiang, Du, Huilong, Gao, Bin, Guo, Dong, Yang, Shuguang, Zhang, Shixin, Li, Yan, Fan, Xiuli, Hai, Chunyan, Kou, Liquan, Zhang, Jiao, Wang, Zhiwei, Li, Yan, Xue, Wenbo, Xu, Jiang, Deng, Xiaomin, Huang, Xiao, Gao, Xinsheng, Zhang, Xiaofei, Hu, Yanshi, Zeng, Xia, Li, Weiguo, Zhang, Liangsheng, Peng, Shiqing, Wu, Jilin, Hao, Bingzhong, Wang, Xuchu, Yu, Hong, Li, Jiayang, Liang, Chengzhi, Tian, WeiMin. Genomic insight into domestication of rubber tree. NATURE COMMUNICATIONS[J]. 2023, 第 34 作者 通讯作者 14(1): http://dx.doi.org/10.1038/s41467-023-40304-y.
[9] Wang, Wei, Qin, Li, Zhang, Wenjing, Tang, Linghui, Zhang, Chao, Dong, Xiaojing, Miao, Pei, Shen, Meng, Du, Huilong, Cheng, Hangyuan, Wang, Ke, Zhang, Xiangyun, Su, Min, Lu, Hongwei, Li, Chang, Gao, Qiang, Zhang, Xiaojuan, Huang, Yun, Liang, Chengzhi, Zhou, JianMin, Chen, Yuhang. WeiTsing, a pericycle-expressed ion channel, safeguards the stele to confer clubroot resistance. CELL[J]. 2023, 第 19 作者186(12): 2656-+, http://dx.doi.org/10.1016/j.cell.2023.05.023.
[10] 金京波, 梁承志. 饲草基因组学研究进展. 植物学报[J]. 2022, 第 2 作者57(6): 1-10,
[11] Xiaoli Shi, Fa Cui, Xinyin Han, Yilin He, Long Zhao, Na Zhang, Hao Zhang, Haidong Zhu, Zhexin Liu, Bin Ma, Shusong Zheng, Wei Zhang, Jiajia Liu, Xiaoli Fan, Yaoqi Si, Shuiquan Tian, Jianqing Niu, Huilan Wu, Xuemei Liu, Zhuo Chen, Deyuan Meng, Xiaoyan Wang, Liqiang Song, Lijing Sun, Jie Han, Hui Zhao, Jun Ji, Zhiguo Wang, Xiaoyu He, Ruilin Li, Xuebin Chi, Chengzhi Liang, Beifang Niu, Jun Xiao, Junming Li, HongQing Ling. Comparative genomic and transcriptomic analyses uncover the molecular basis of high nitrogen-use efficiency in the wheat cultivar Kenong 9204. Molecular Plant[J]. 2022, 第 32 作者 通讯作者 15(9): 1440-1456, http://dx.doi.org/10.1016/j.molp.2022.07.008.
[12] Lin, Tao, Xu, Xia, Du, Huilong, Fan, Xiuli, Chen, Qingwen, Hai, Chunyan, Zhou, Zijian, Su, Xiao, Kou, Liquan, Gao, Qiang, Deng, Lingwei, Jiang, Jinsheng, You, Hanli, Ma, Yihua, Cheng, Zhukuan, Wang, Guodong, Liang, Chengzhi, Zhang, Guomin, Yu, Hong, Li, Jiayang. Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum. SCIENCE CHINA-LIFE SCIENCES[J]. 2022, 第 17 作者 通讯作者 65(3): 515-528, http://apps.webofknowledge.com/CitedFullRecord.do?product=UA&colName=WOS&SID=5CCFccWmJJRAuMzNPjj&search_mode=CitedFullRecord&isickref=WOS:000733867700001.
[13] Shen, Yanting, Zhou, Guoan, Liang, Chengzhi, Tian, Zhixi. Omics-based interdisciplinarity is accelerating plant breeding. CURRENT OPINION IN PLANT BIOLOGY. 2022, 第 3 作者66: http://dx.doi.org/10.1016/j.pbi.2021.102167.
[14] Lin, Tao, Xu, Xia, Du, Huilong, Fan, Xiuli, Chen, Qingwen, Hai, Chunyan, Zhou, Zijian, Su, Xiao, Kou, Liquan, Gao, Qiang, Deng, Lingwei, Jiang, Jinsheng, You, Hanli, Ma, Yihua, Cheng, Zhukuan, Wang, Guodong, Liang, Chengzhi, Zhang, Guomin, Yu, Hong, Li, Jiayang. Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum. SCIENCE CHINA-LIFE SCIENCES. 2021, 第 17 作者 通讯作者
[15] Chao Huang, Zhuo Chen, Chengzhi Liang. Oryza pan-genomics: A new foundation for future rice research and improvement. THE CROP JOURNAL[J]. 2021, 第 3 作者 通讯作者 9(3): 622-632, http://dx.doi.org/10.1016/j.cj.2021.04.003.
[16] Huang, Chao, Chen, Zhuo, Liang, Chengzhi. Oryza pan-genomics: A new foundation for future rice research and improvement. CROP JOURNAL. 2021, 第 3 作者 通讯作者 9(3): 622-632, http://lib.cqvip.com/Qikan/Article/Detail?id=7104813324.
[17] Xie, Xianrong, Du, Huilong, Tang, Huiwu, Tang, Jianian, Tan, Xiyu, Liu, Weizhi, Li, Tie, Lin, Zhansheng, Liang, Chengzhi, Liu, YaoGuang. A chromosome-level genome assembly of the wild riceOryza rufipogonfacilitates tracing the origins of Asian cultivated rice. SCIENCE CHINA-LIFE SCIENCES[J]. 2021, 第 9 作者 通讯作者 64(2): 282-293, http://lib.cqvip.com/Qikan/Article/Detail?id=7103978098.
[18] Yu, Hong, Lin, Tao, Meng, Xiangbing, Du, Huilong, Zhang, Jingkun, Liu, Guifu, Chen, Mingjiang, Jing, Yanhui, Kou, Liquan, Li, Xiuxiu, Gao, Qiang, Liang, Yan, Liu, Xiangdong, Fan, Zhilan, Liang, Yuntao, Cheng, Zhukuan, Chen, Mingsheng, Tian, Zhixi, Wang, Yonghong, Chu, Chengcai, Zuo, Jianru, Wan, Jianmin, Qian, Qian, Han, Bin, Zuccolo, Andrea, Wing, Rod A, Gao, Caixia, Liang, Chengzhi, Li, Jiayang. A route to de novo domestication of wild allotetraploid rice. CELL[J]. 2021, 第 28 作者 通讯作者 184(5): 1156-+, http://dx.doi.org/10.1016/j.cell.2021.01.013.
[19] Qin, Peng, Lu, Hongwei, Du, Huilong, Wang, Hao, Chen, Weilan, Chen, Zhuo, He, Qiang, Ou, Shujun, Zhang, Hongyu, Li, Xuanzhao, Li, Xiuxiu, Li, Yan, Liao, Yi, Gao, Qiang, Tu, Bin, Yuan, Hua, Ma, Bingtian, Wang, Yuping, Qian, Yangwen, Fan, Shijun, Li, Weitao, Wang, Jing, He, Min, Yin, Junjie, Li, Ting, Jiang, Ning, Chen, Xuewei, Liang, Chengzhi, Li, Shigui. Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations. CELL[J]. 2021, 第 28 作者 通讯作者 184(13): 3542-+, http://dx.doi.org/10.1016/j.cell.2021.04.046.
[20] Chen, Zhuo, Li, Xiuxiu, Lu, Hongwei, Gao, Qiang, Du, Huilong, Peng, Hua, Qin, Peng, Liang, Chengzhi. Genomic atlases of introgression and differentiation reveal breeding footprints in Chinese cultivated rice. JOURNAL OF GENETICS AND GENOMICS[J]. 2020, 第 8 作者 通讯作者 47(10): 637-649, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=6913536&detailType=1.
[21] 梁承志. A chromosome-level genome assembly of the wild rice Oryza rufipogon facilitates tracing the origins of Asian cultivated rice. Science China Life Sciences. 2020, 第 1 作者 通讯作者
[22] 赵宇慧, 李秀秀, 陈倬, 鲁宏伟, 刘羽诚, 张志方, 梁承志. 生物信息学分析方法Ⅰ:全基因组关联分析概述. 植物学报[J]. 2020, 第 7 作者18, https://kns.cnki.net/KCMS/detail/detail.aspx?dbcode=CJFD&dbname=CJFDAUTO&filename=ZWXT202006006&v=MDAyMzVrVTcvT1B6clRlckc0SE5ITXFZOUZZb1I4ZVgxTHV4WVM3RGgxVDNxVHJXTTFGckNVUjd1Zlp1UnZGQ3Y=.
[23] Li, Xiuxiu, Chen, Zhuo, Zhang, Guomin, Lu, Hongwei, Qin, Peng, Qi, Ming, Yu, Ying, Jiao, Bingke, Zhao, Xianfeng, Gao, Qiang, Wang, Hao, Wu, Yunyu, Ma, Juntao, Zhang, Liyan, Wang, Yongli, Deng, Lingwei, Yao, Shanguo, Cheng, Zhukuang, Yu, Diqiu, Zhu, Lihuang, Xue, Yongbiao, Chu, Chengcai, Li, Aihong, Li, Shigui, Liang, Chengzhi. Analysis of genetic architecture and favorable allele usage of agronomic traits in a large collection of Chinese rice accessions. SCIENCE CHINA-LIFE SCIENCES[J]. 2020, 第 25 作者 通讯作者 63(11): 1688-1702, https://www.sciengine.com/doi/10.1007/s11427-019-1682-6.
[24] Shen, Chen, Du, Huilong, Chen, Zhuo, Lu, Hongwei, Zhu, Fugui, Chen, Hong, Meng, Xiangzhao, Liu, Qianwen, Liu, Peng, Zheng, Lihua, Li, Xiuxiu, Dong, Jiangli, Liang, Chengzhi, Wang, Tao. The Chromosome-Level Genome Sequence of the Autotetraploid Alfalfa and Resequencing of Core Germplasms Provide Genomic Resources for Alfalfa Research. MOLECULAR PLANT[J]. 2020, 第 13 作者 通讯作者 13(9): 1250-1261, http://lib.cqvip.com/Qikan/Article/Detail?id=7103401570.
[25] Liu, Hongbing, Shi, Junpeng, Cai, Zexi, Huang, Yumin, Lv, Menglu, Du, Huilong, Gao, Qiang, Zuo, Yi, Dong, Zhaobin, Huang, Wei, Qin, Rui, Liang, Chengzhi, Lai, Jinsheng, Jin, Weiwei. Evolution and Domestication Footprints Uncovered from the Genomes of Coix. MOLECULAR PLANT[J]. 2020, 第 12 作者13(2): 295-308, http://lib.cqvip.com/Qikan/Article/Detail?id=7101522862.
[26] Liu, Yucheng, Du, Huilong, Li, Pengcheng, Shen, Yanting, Peng, Hua, Liu, Shulin, Zhou, GuoAn, Zhang, Haikuan, Liu, Zhi, Shi, Miao, Huang, Xuehui, Li, Yan, Zhang, Min, Wang, Zheng, Zhu, Baoge, Han, Bin, Liang, Chengzhi, Tian, Zhixi. Pan-Genome of Wild and Cultivated Soybeans. CELL[J]. 2020, 第 17 作者 通讯作者 182(1): 162-+, http://dx.doi.org/10.1016/j.cell.2020.05.023.
[27] Peng, Hua, Wang, Kai, Chen, Zhuo, Cao, Yinghao, Gao, Qiang, Li, Yan, Li, Xiuxiu, Lu, Hongwei, Du, Huilong, Lu, Min, Yang, Xin, Liang, Chengzhi. MBKbase for rice: an integrated omics knowledgebase for molecular breeding in rice. NUCLEIC ACIDS RESEARCH[J]. 2020, 第 12 作者 通讯作者 48(D1): D1085-D1092, https://www.webofscience.com/wos/woscc/full-record/WOS:000525956700139.
[28] Li, Miaomiao, Zhang, Dongfen, Gao, Qiang, Luo, Yingfeng, Zhang, Hui, Ma, Bin, Chen, Chunhai, Whibley, Annabel, Zhang, Yue, Cao, Yinghao, Li, Qun, Guo, Han, Li, Junhui, Song, Yanzhai, Zhang, Yue, Copsey, Lucy, Li, Yan, Li, Xiuxiu, Qi, Ming, Wang, Jiawei, Chen, Yan, Wang, Dan, Zhao, Jinyang, Liu, Guocheng, Wu, Bin, Yu, Lili, Xu, Chunyan, Li, Jiang, Zhao, Shancen, Zhang, Yijing, Hu, Songnian, Liang, Chengzhi, Yin, Ye, Coen, Enrico, Xue, Yongbiao. Genome structure and evolution of Antirrhinum majus L. NATURE PLANTS[J]. 2019, 第 32 作者 通讯作者 5(2): 174-+, http://dx.doi.org/10.1038/s41477-018-0349-9.
[29] 梁承志. 从作物基因组分析到整合组学知识库建设. 遗传[J]. 2019, 第 1 作者41(9): 875-882, http://www.chinagene.cn/CN/10.16288/j.yczz.19-121.
[30] Yu, Hua, Lu, Lu, Jiao, Bingke, Liang, Chengzhi. Systematic discovery of novel and valuable plant gene modules by large-scale RNA-seq samples. BIOINFORMATICS[J]. 2019, 第 4 作者 通讯作者 35(3): 361-364, http://dx.doi.org/10.1093/bioinformatics/bty642.
[31] Shen, Yanting, Du, Huilong, Liu, Yucheng, Ni, Lingbin, Wang, Zheng, Liang, Chengzhi, Tian, Zhixi. Update soybean Zhonghuang 13 genome to a golden reference. SCIENCE CHINA-LIFE SCIENCES. 2019, 第 6 作者 通讯作者 62(9): 1257-1260, https://www.sciengine.com/doi/10.1007/s11427-019-9822-2.
[32] Yanting Shen, Huilong Du, Yucheng Liu, Lingbin Ni, Zheng Wang, Chengzhi Liang, Zhixi Tian. Update soybean Zhonghuang 13 genome to a golden reference. 中国科学:生命科学英文版. 2019, 第 6 作者 通讯作者 62(9): 1257-1260, http://lib.cqvip.com/Qikan/Article/Detail?id=7002865574.
[33] Jin, Shuai, Zong, Yuan, Gao, Qiang, Zhu, Zixu, Wang, Yanpeng, Qin, Peng, Liang, Chengzhi, Wang, Daowen, Qiu, JinLong, Zhang, Feng, Gao, Caixia. Cytosine, but not adenine, base editors induce genome-wide off-target mutations in rice. SCIENCE[J]. 2019, 第 7 作者364(6437): 292-+, http://dx.doi.org/10.1126/science.aaw7166.
[34] Huilong Du, Chengzhi Liang. Assembly of chromosome-scale contigs by efficiently resolving repetitive sequences with long reads. NATURE COMMUNICATIONS[J]. 2019, 第 2 作者 通讯作者 10(1): 1-10, https://doaj.org/article/e4cb5234c1a7488d86300fa3e1c6f161.
[35] Xiao, Ning, Gao, Yong, Qian, Huangjun, Gao, Qiang, Wu, Yunyu, Zhang, Dongping, Zhang, Xiaoxiang, Yu, Ling, Li, Yuhong, Pan, Cunhong, Liu, Guangqing, Zhou, Changhai, Jiang, Min, Huang, Niansheng, Dai, Zhengyuan, Liang, Chengzhi, Chen, Zhou, Chen, Jianmin, Li, Aihong. Identification of Genes Related to Cold Tolerance and a Functional Allele That Confers Cold Tolerance. PLANT PHYSIOLOGY[J]. 2018, 第 16 作者177(3): 1108-1123, http://dx.doi.org/10.1104/pp.18.00209.
[36] Yu, Hua, Jiao, Bingke, Lu, Lu, Wang, Pengfei, Chen, Shuangcheng, Liang, Chengzhi, Liu, Wei. NetMiner-an ensemble pipeline for building genome-wide and high-quality gene co-expression network using massive-scale RNA-seq samples. PLOS ONE[J]. 2018, 第 6 作者 通讯作者 13(2): https://doaj.org/article/c1eff04c2bc74fe5b17a0818f87ef49c.
[37] Ling, HongQing, Ma, Bin, Shi, Xiaoli, Liu, Hui, Dong, Lingli, Sun, Hua, Cao, Yinghao, Gao, Qiang, Zheng, Shusong, Li, Ye, Yu, Ying, Du, Huilong, Qi, Ming, Li, Yan, Lu, Hongwei, Yu, Hua, Cui, Yan, Wang, Ning, Chen, Chunlin, Wu, Huilan, Zhao, Yan, Zhang, Juncheng, Li, Yiwen, Zhou, Wenjuan, Zhang, Bairu, Hu, Weijuan, van Eijk, Michiel J T, Tang, Jifeng, Witsenboer, Hanneke M A, Zhao, Shancen, Li, Zhensheng, Zhang, Aimin, Wang, Daowen, Liang, Chengzhi. Genome sequence of the progenitor of wheat A subgenome Triticum urartu. NATURE[J]. 2018, 第 34 作者 通讯作者 557(7705): 424-+, http://dx.doi.org/10.1038/s41586-018-0108-0.
[38] Wu, Zhigang, Fang, Dongming, Yang, Rui, Gao, Fei, An, Xingyu, Zhuo, Xiaoxuan, Li, Yafei, Yi, Chuandeng, Zhang, Tao, Liang, Chengzhi, Cui, Peng, Cheng, Zhukuan, Luo, Qiong. De novo genome assembly of Oryza granulata reveals rapid genome expansion and adaptive evolution. COMMUNICATIONS BIOLOGY[J]. 2018, 第 10 作者1(1): https://doaj.org/article/cc33911a89464f3bb920566cd76058a2.
[39] Zhang, GuoMin, Zheng, TianQing, Chen, Zhuo, Wang, YongLi, Wang, Ying, Shi, YuMin, Wang, ChunChao, Zhang, LiYan, Ma, JunTao, Deng, LingWei, Li, Wan, Xu, TianTian, Liang, ChengZhi, Xu, JianLong, Li, ZhiKang. Joint Exploration of Favorable Haplotypes for Mineral Concentrations in Milled Grains of Rice (Oryza sativa L.). FRONTIERS IN PLANT SCIENCE[J]. 2018, 第 13 作者9: https://doaj.org/article/84efe2cd61d04b808bb7177f6aef2a7d.
[40] Sun, Silong, Zhou, Yingsi, Chen, Jian, Shi, Junpeng, Zhao, Haiming, Zhao, Hainan, Song, Weibin, Zhang, Mei, Cui, Yang, Dong, Xiaomei, Liu, Han, Ma, Xuxu, Jiao, Yinping, Wang, Bo, Wei, Xuehong, Stein, Joshua C, Glaubitz, Jeff C, Lu, Fei, Yu, Guoliang, Liang, Chengzhi, Fengler, Kevin, Li, Bailin, Rafalski, Antoni, Schnable, Patrick S, Ware, Doreen H, Buckler, Edward S, Lai, Jinsheng. Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes. NATURE GENETICS[J]. 2018, 第 20 作者50(9): 1289-+, http://dx.doi.org/10.1038/s41588-018-0182-0.
[41] Liu, Lingtong, Lu, Yunlong, Wei, Liqin, Yu, Hua, Cao, Yinghao, Li, Yan, Yang, Ning, Song, Yunyun, Liang, Chengzhi, Wang, Tai. Transcriptomics analyses reveal the molecular roadmap and long non-coding RNA landscape of sperm cell lineage development. PLANT JOURNAL[J]. 2018, 第 9 作者 通讯作者 96(2): 421-437, http://dx.doi.org/10.1111/tpj.14041.
[42] Wang, Shiguang, Ma, Bingtian, Gao, Qiang, Jiang, Guojing, Zhou, Lei, Tu, Bin, Qin, Peng, Tan, Xueqin, Liu, Peixiong, Kang, Yunhai, Wang, Yuping, Chen, Weilan, Liang, Chengzhi, Li, Shigui. Dissecting the genetic basis of heavy panicle hybrid rice uncovered Gn1a and GS3 as key genes. THEORETICAL AND APPLIED GENETICS[J]. 2018, 第 13 作者 通讯作者 131(6): 1391-1403, http://dx.doi.org/10.1007/s00122-018-3085-7.
[43] Huilong Du, Ying Yu, Yanfei Ma, Qiang Gao, Yinghao Cao, Zhuo Chen, Bin Ma, Ming Qi, Yan Li, Xianfeng Zhao, Jing Wang, Kunfan Liu, Peng Qin, Xin Yang, Lihuang Zhu, Shigui Li, Chengzhi Liang. Sequencing and de novo assembly of a near complete indica rice genome. NATURE COMMUNICATIONS[J]. 2017, 第 17 作者 通讯作者 8(1): https://doaj.org/article/c34a4a01b330408891d03cfd409507d7.
[44] Xiao, Ning, Wu, Yunyu, Pan, Cunhong, Yu, Ling, Chen, Yu, Liu, Guangqing, Li, Yuhong, Zhang, Xiaoxiang, Wang, Zhiping, Dai, Zhengyuan, Liang, Chengzhi, Li, Aihong. Improving of Rice Blast Resistances in Japonica by Pyramiding Major R Genes. FRONTIERS IN PLANT SCIENCE[J]. 2017, 第 11 作者 通讯作者 7: https://www.webofscience.com/wos/woscc/full-record/WOS:000391060300001.
[45] Liang, Chengzhen, Li, Aifu, Yu, Hua, Li, Wenzhen, Liang, Chengzhi, Guo, Sandui, Zhang, Rui, Chu, Chengcai. Melatonin Regulates Root Architecture by Modulating Auxin Response in Rice. FRONTIERS IN PLANT SCIENCE[J]. 2017, 第 5 作者8: http://dx.doi.org/10.3389/fpls.2017.00134.
[46] Zhang, Lijun, Li, Xiuxiu, Ma, Bin, Gao, Qiang, Du, Huilong, Han, Yuanhuai, Li, Yan, Cao, Yinghao, Qi, Ming, Zhu, Yaxin, Lu, Hongwei, Ma, Mingchuan, Liu, Longlong, Zhou, Jianping, Nan, Chenghu, Qin, Yongjun, Wang, Jun, Cui, Lin, Liu, Huimin, Liang, Chengzhi, Qiao, Zhijun. The Tartary Buckwheat Genome Provides Insights into Rutin Biosynthesis and Abiotic Stress Tolerance. MOLECULAR PLANT[J]. 2017, 第 20 作者 通讯作者 10(9): 1224-1237, http://lib.cqvip.com/Qikan/Article/Detail?id=673606553.
[47] Wu, Yunyu, Chen, Yu, Pan, Cunhong, Xiao, Ning, Yu, Ling, Li, Yuhong, Zhang, Xiaoxiang, Pan, Xuebiao, Chen, Xijun, Liang, Chengzhi, Dai, Zhengyuan, Li, Aihong. Development and Evaluation of Near-Isogenic Lines with Different Blast Resistance Alleles at the Piz Locus in japonica Rice from the Lower Region of the Yangtze River, China. PLANT DISEASE[J]. 2017, 第 10 作者101(7): 1283-1291, https://www.webofscience.com/wos/woscc/full-record/WOS:000403384200028.
[48] Li, Shaofeng, Fan, Chengming, Li, Yan, Zhang, Jianhui, Sun, Jingshuang, Chen, Yuhong, Tian, Changyan, Su, Xiaohua, Lu, Mengzhu, Liang, Chengzhi, Hu, Zanmin. Effects of drought and salt-stresses on gene expression in Caragana korshinskii seedlings revealed by RNA-seq. BMC GENOMICS[J]. 2016, 第 10 作者17(1): http://dx.doi.org/10.1186/s12864-016-2562-0.
[49] Li, Dejun, Zeng, Rizhong, Li, Yan, Zhao, Manman, Chao, Jinquan, Li, Yu, Wang, Kai, Zhu, Lihuang, Tian, WeiMin, Liang, Chengzhi. Gene expression analysis and SNP/InDel discovery to investigate yield heterosis of two rubber tree F1 hybrids. SCIENTIFIC REPORTS[J]. 2016, 第 10 作者 通讯作者 6: http://dx.doi.org/10.1038/srep24984.
[50] Wu, Yunyu, Yu, Ling, Pan, Cunhong, Dai, Zhengyuan, Li, Yuhong, Xiao, Ning, Zhang, Xiaoxiang, Ji, Hongjuan, Huang, Niansheng, Zhao, Buhong, Zhou, Changhai, Liu, Guangqing, Liu, Xiaojing, Pan, Xuebiao, Liang, Chengzhi, Li, Aihong. Development of near-isogenic lines with different alleles of Piz locus and analysis of their breeding effect under Yangdao 6 background. MOLECULAR BREEDING[J]. 2016, 第 15 作者36(2): https://www.webofscience.com/wos/woscc/full-record/WOS:000379158900001.
[51] Li, Dayong, Huang, Zhiyuan, Song, Shuhui, Xin, Yeyun, Mao, Donghai, Lv, Qiming, Zhou, Ming, Tian, Dongmei, Tang, Mingfeng, Wu, Qi, Liu, Xue, Chen, Tingting, Song, Xianwei, Fu, Xiqin, Zhao, Bingran, Liang, Chengzhi, Li, Aihong, Liu, Guozhen, Li, Shigui, Hu, Songnian, Cao, Xiaofeng, Yu, Jun, Yuan, Longping, Chen, Caiyan, Zhu, Lihuang. Integrated analysis of phenome, genome, and transcriptome of hybrid rice uncovered multiple heterosis-related loci for yield increase. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA[J]. 2016, 第 16 作者113(41): E6026-E6035, http://dx.doi.org/10.1073/pnas.1610115113.
[52] Chen, Jinfeng, Huang, Quanfei, Gao, Dongying, Wang, Junyi, Lang, Yongshan, Liu, Tieyan, Li, Bo, Bai, Zetao, Goicoechea, Jose Luis, Liang, Chengzhi, Chen, Chengbin, Zhang, Wenli, Sun, Shouhong, Liao, Yi, Zhang, Xuemei, Yang, Lu, Song, Chengli, Wang, Meijiao, Shi, Jinfeng, Liu, Geng, Liu, Junjie, Zhou, Heling, Zhou, Weili, Yu, Qiulin, An, Na, Chen, Yan, Cai, Qingle, Wang, Bo, Liu, Binghang, Min, Jiumeng, Huang, Ying, Wu, Honglong, Li, Zhenyu, Zhang, Yong, Yin, Ye, Song, Wenqin, Jiang, Jiming, Jackson, Scott A, Wing, Rod A, Wang, Jun, Chen, Mingsheng. Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution. NATURE COMMUNICATIONS[J]. 2013, 第 10 作者4: 1595, http://dx.doi.org/10.1038/ncomms2596.
科研活动
科研项目
( 1 ) 数据库建设与新算法开发, 负责人, 中国科学院计划, 2013-08--2018-07
( 2 ) 大豆数据库建设, 负责人, 中国科学院计划, 2019-01--2022-12
( 3 ) 智能生物育种大数据平台, 负责人, 中国科学院计划, 2019-11--2024-12
( 4 ) G2P:农作物基因资源阐析, 参与, 国家任务, 2020-06--2023-06
( 5 ) 番茄品质和抗性的多组学研究与关键基因发掘, 参与, 国家任务, 2020-01--2024-12
( 6 ) 稻属抗病蛋白NLR家族的泛基因组研究及 抗稻瘟病功能基因的鉴定, 负责人, 国家任务, 2022-01--2025-12
( 2 ) 大豆数据库建设, 负责人, 中国科学院计划, 2019-01--2022-12
( 3 ) 智能生物育种大数据平台, 负责人, 中国科学院计划, 2019-11--2024-12
( 4 ) G2P:农作物基因资源阐析, 参与, 国家任务, 2020-06--2023-06
( 5 ) 番茄品质和抗性的多组学研究与关键基因发掘, 参与, 国家任务, 2020-01--2024-12
( 6 ) 稻属抗病蛋白NLR家族的泛基因组研究及 抗稻瘟病功能基因的鉴定, 负责人, 国家任务, 2022-01--2025-12
指导学生
已指导学生
余华 博士研究生 0710J3-生物信息学
杜会龙 博士研究生 0710J3-生物信息学
鲁宏伟 博士研究生 0710J3-生物信息学
李秀秀 博士研究生 0710J3-生物信息学
焦丙可 硕士研究生 071021-生物信息学
陈倬 博士研究生 0710J3-生物信息学
彭骅 博士研究生 0710J3-生物信息学
陆敏 硕士研究生 0710J3-生物信息学
现指导学生
陈永顺 硕士研究生 086000-生物与医药
潘颖 硕士研究生 086000-生物与医药
杨凯欣 硕士研究生 086000-生物与医药
黄超 博士研究生 0710J3-生物信息学
田骄阳 博士研究生 0710J3-生物信息学
周健 硕士研究生 086000-生物与医药
姬玉 硕士研究生 086000-生物与医药